Wall clock time and date at job start Mon Mar 8 2021 08:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86300 * 109.47128 * 2 1 4 4 C 1.50705 * 109.47142 * 120.00254 * 2 1 3 5 5 C 1.38840 * 120.33903 * 64.99756 * 4 2 1 6 6 C 1.38331 * 118.50490 * 180.02562 * 5 4 2 7 7 C 1.39097 * 119.10460 * 0.02562 * 6 5 4 8 8 N 1.39000 * 119.71080 * 179.97438 * 7 6 5 9 9 C 1.46506 * 119.99894 * 359.97438 * 8 7 6 10 10 C 1.52999 * 109.47139 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.46998 * 305.00362 * 10 9 8 12 12 C 1.53005 * 109.46804 * 65.00240 * 10 9 8 13 13 C 1.52999 * 109.46768 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47498 * 300.00318 * 13 12 10 15 15 H 1.08998 * 109.47158 * 299.99727 * 14 13 12 16 16 C 1.52999 * 109.47157 * 179.97438 * 14 13 12 17 17 O 1.42903 * 109.47256 * 65.00201 * 16 14 13 18 18 C 1.52996 * 109.47324 * 59.99888 * 14 13 12 19 19 C 1.52999 * 109.46961 * 300.00068 * 18 14 13 20 20 N 1.32428 * 120.58394 * 0.25346 * 7 6 5 21 21 C 1.31942 * 121.62566 * 359.47812 * 20 7 6 22 22 H 0.96701 * 113.99330 * 300.00021 * 1 2 3 23 23 H 1.09000 * 109.47111 * 240.00219 * 2 1 3 24 24 H 1.48507 * 109.99867 * 178.67913 * 3 2 1 25 25 H 1.48499 * 110.00086 * 299.99943 * 3 2 1 26 26 H 1.08002 * 120.74207 * 0.04241 * 5 4 2 27 27 H 1.07999 * 120.45184 * 180.02562 * 6 5 4 28 28 H 0.97001 * 120.00335 * 180.02562 * 8 7 6 29 29 H 1.09004 * 109.46865 * 60.00189 * 9 8 7 30 30 H 1.09001 * 109.47345 * 300.00499 * 9 8 7 31 31 H 1.08999 * 109.47085 * 299.99797 * 12 10 9 32 32 H 1.08998 * 109.47244 * 60.00272 * 12 10 9 33 33 H 1.08996 * 109.47277 * 179.97438 * 13 12 10 34 34 H 1.09001 * 109.47195 * 60.00374 * 13 12 10 35 35 H 1.08997 * 109.47286 * 304.99761 * 16 14 13 36 36 H 1.09008 * 109.47201 * 184.99542 * 16 14 13 37 37 H 0.96700 * 114.00311 * 180.02562 * 17 16 14 38 38 H 1.08998 * 109.47134 * 59.99825 * 18 14 13 39 39 H 1.08999 * 109.47038 * 180.02562 * 18 14 13 40 40 H 1.09004 * 109.47113 * 179.97438 * 19 18 14 41 41 H 1.08993 * 109.47646 * 300.00120 * 19 18 14 42 42 H 1.07996 * 119.57332 * 180.24410 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 1.6877 -2.0660 1.4062 6 6 2.1657 -2.6798 2.5500 7 6 2.8699 -1.9226 3.4803 8 7 3.3555 -2.5264 4.6343 9 6 3.1242 -3.9543 4.8668 10 6 3.7565 -4.3632 6.1987 11 1 4.8111 -4.0878 6.1999 12 6 3.0405 -3.6454 7.3446 13 6 3.6724 -4.0547 8.6766 14 6 3.5397 -5.5678 8.8604 15 1 2.4850 -5.8429 8.8589 16 6 4.1721 -5.9772 10.1921 17 8 3.4314 -5.3992 11.2689 18 6 4.2555 -6.2856 7.7145 19 6 3.6237 -5.8763 6.3826 20 7 3.0771 -0.6302 3.2790 21 6 2.6373 -0.0196 2.1952 22 1 -0.3932 0.4417 0.7651 23 1 1.7924 -0.5138 -0.8900 24 1 3.5347 1.7702 0.0322 25 1 1.5615 2.4679 -1.2085 26 1 1.1374 -2.6285 0.6664 27 1 1.9945 -3.7328 2.7185 28 1 3.8468 -2.0023 5.2861 29 1 3.5735 -4.5314 4.0585 30 1 2.0521 -4.1482 4.8992 31 1 3.1348 -2.5674 7.2134 32 1 1.9859 -3.9208 7.3434 33 1 3.1627 -3.5431 9.4930 34 1 4.7271 -3.7797 8.6782 35 1 5.2025 -5.6236 10.2289 36 1 4.1572 -7.0634 10.2828 37 1 3.7769 -5.6168 12.1454 38 1 5.3102 -6.0105 7.7160 39 1 4.1606 -7.3635 7.8453 40 1 4.1340 -6.3873 5.5661 41 1 2.5690 -6.1513 6.3810 42 1 2.8285 1.0350 2.0629 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14939084_13915762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:35:50 Heat of formation + Delta-G solvation = -58.955766 kcal Electronic energy + Delta-G solvation = -21514.503578 eV Core-core repulsion = 18267.017244 eV Total energy + Delta-G solvation = -3247.486334 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.41632 -40.21749 -38.21043 -37.59180 -36.33059 -33.63689 -33.07537 -31.73728 -31.11782 -28.14215 -26.13068 -25.08061 -24.26384 -23.62817 -22.42004 -21.53174 -20.78756 -18.71206 -18.46694 -18.19584 -17.49037 -16.55149 -16.48699 -16.09299 -16.00059 -15.68318 -15.58625 -15.34105 -15.00665 -14.72456 -14.60019 -14.28915 -14.04499 -13.98181 -13.48270 -13.36624 -13.10487 -12.84660 -12.48915 -12.35653 -12.14223 -12.05094 -11.92136 -11.41511 -11.22478 -11.12607 -11.01827 -10.79394 -10.72465 -10.43140 -10.38090 -8.68602 -4.98889 0.23520 0.39976 1.34459 1.64525 1.97374 2.13826 2.84085 3.30003 3.56687 3.60180 3.65196 3.73199 3.76143 3.80091 3.98929 4.08555 4.14178 4.17409 4.29147 4.37114 4.44226 4.48046 4.50132 4.53699 4.58046 4.64188 4.69496 4.74479 4.75490 4.80238 4.94164 5.01291 5.08873 5.15467 5.21364 5.23884 5.29206 5.32848 5.44050 5.51937 5.56500 6.02577 6.53822 6.79873 6.87013 7.14513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.054 4.054 3 Si 0.765 3.235 4 C -0.239 4.239 5 C -0.013 4.013 6 C -0.243 4.243 7 C 0.394 3.606 8 N -0.720 5.720 9 C 0.132 3.868 10 C -0.088 4.088 11 H 0.079 0.921 12 C -0.110 4.110 13 C -0.107 4.107 14 C -0.088 4.088 15 H 0.065 0.935 16 C 0.074 3.926 17 O -0.597 6.597 18 C -0.109 4.109 19 C -0.108 4.108 20 N -0.566 5.566 21 C 0.148 3.852 22 H 0.394 0.606 23 H 0.107 0.893 24 H -0.288 1.288 25 H -0.296 1.296 26 H 0.145 0.855 27 H 0.148 0.852 28 H 0.405 0.595 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.395 0.605 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.896 -3.122 2.905 4.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.165 4.165 3 Si 0.672 3.328 4 C -0.245 4.245 5 C -0.038 4.038 6 C -0.268 4.268 7 C 0.157 3.843 8 N -0.352 5.352 9 C 0.009 3.991 10 C -0.107 4.107 11 H 0.097 0.903 12 C -0.148 4.148 13 C -0.145 4.145 14 C -0.107 4.107 15 H 0.083 0.917 16 C -0.003 4.003 17 O -0.405 6.405 18 C -0.147 4.147 19 C -0.146 4.146 20 N -0.284 5.284 21 C -0.009 4.009 22 H 0.244 0.756 23 H 0.124 0.876 24 H -0.215 1.215 25 H -0.224 1.224 26 H 0.162 0.838 27 H 0.165 0.835 28 H 0.241 0.759 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.244 0.756 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.527 -2.378 2.121 3.533 hybrid contribution 0.219 -0.992 -0.008 1.016 sum 1.746 -3.370 2.113 4.343 Atomic orbital electron populations 1.86455 1.17426 1.82129 1.50437 1.24846 0.85027 1.10129 0.96480 0.93874 0.77906 0.75887 0.85178 1.21044 1.07007 0.96248 1.00177 1.21400 0.93120 0.93656 0.95656 1.21626 1.06433 1.02099 0.96608 1.18647 0.89649 0.88434 0.87525 1.44645 1.60285 1.10075 1.20185 1.21565 1.00791 0.79234 0.97548 1.21311 1.00325 0.96423 0.92668 0.90250 1.21557 0.99585 0.99711 0.93956 1.21461 1.00846 0.95234 0.96941 1.21173 1.00296 0.95908 0.93305 0.91688 1.22337 0.94426 0.96800 0.86736 1.86436 1.58585 1.76873 1.18596 1.21478 0.99798 1.00164 0.93219 1.21469 1.01875 0.93681 0.97547 1.67143 1.26859 1.09841 1.24534 1.22461 0.91457 0.99491 0.87518 0.75638 0.87557 1.21511 1.22372 0.83769 0.83464 0.75873 0.91039 0.91434 0.92166 0.92248 0.92936 0.91956 0.93024 0.92850 0.75580 0.91254 0.90865 0.90311 0.91339 0.81423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.43 12.84 -148.98 -1.91 -2.35 16 2 C -0.05 -0.02 2.82 71.24 0.20 0.18 16 3 Si 0.76 -0.77 29.83 68.60 2.05 1.27 16 4 C -0.24 -0.47 5.36 -19.76 -0.11 -0.57 16 5 C -0.01 -0.02 9.83 22.44 0.22 0.20 16 6 C -0.24 -0.47 9.33 22.50 0.21 -0.26 16 7 C 0.39 1.69 7.65 133.05 1.02 2.71 16 8 N -0.72 -0.15 5.46 -345.07 -1.88 -2.04 16 9 C 0.13 -0.54 4.28 86.38 0.37 -0.17 16 10 C -0.09 0.44 2.23 -10.79 -0.02 0.42 16 11 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 12 C -0.11 0.26 5.08 30.60 0.16 0.41 16 13 C -0.11 0.06 5.10 30.59 0.16 0.22 16 14 C -0.09 0.14 2.43 -10.80 -0.03 0.11 16 15 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 16 C 0.07 -0.13 6.43 71.98 0.46 0.33 16 17 O -0.60 -0.85 13.20 -148.98 -1.97 -2.82 16 18 C -0.11 0.55 5.20 30.59 0.16 0.71 16 19 C -0.11 0.65 5.20 30.59 0.16 0.81 16 20 N -0.57 -3.75 10.39 -193.26 -2.01 -5.76 16 21 C 0.15 0.47 9.84 84.64 0.83 1.31 16 22 H 0.39 -2.68 8.70 -74.06 -0.64 -3.32 16 23 H 0.11 0.11 7.96 -2.39 -0.02 0.10 16 24 H -0.29 -1.23 7.11 99.48 0.71 -0.52 16 25 H -0.30 -1.80 7.11 99.48 0.71 -1.09 16 26 H 0.14 -0.09 8.06 -2.91 -0.02 -0.11 16 27 H 0.15 -0.29 6.71 -2.91 -0.02 -0.31 16 28 H 0.41 0.02 7.78 -92.71 -0.72 -0.70 16 29 H 0.07 -0.36 7.93 -2.38 -0.02 -0.38 16 30 H 0.07 -0.28 7.93 -2.39 -0.02 -0.30 16 31 H 0.06 -0.08 7.18 -2.39 -0.02 -0.10 16 32 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.05 0.17 7.82 -2.39 -0.02 0.15 16 34 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 35 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.05 -0.19 8.14 -2.38 -0.02 -0.21 16 37 H 0.39 -2.66 9.12 -74.06 -0.68 -3.34 16 38 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 39 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 40 H 0.08 -0.59 8.14 -2.38 -0.02 -0.61 16 41 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 42 H 0.17 -0.23 4.91 -2.91 -0.01 -0.24 16 Total: 0.00 -15.28 332.21 -2.91 -18.19 By element: Atomic # 1 Polarization: -11.93 SS G_CDS: -0.97 Total: -12.90 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 3.79 Total: 6.40 kcal Atomic # 7 Polarization: -3.91 SS G_CDS: -3.89 Total: -7.80 kcal Atomic # 8 Polarization: -1.29 SS G_CDS: -3.88 Total: -5.17 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: 2.05 Total: 1.27 kcal Total: -15.28 -2.91 -18.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14939084_13915762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.766 kcal (2) G-P(sol) polarization free energy of solvation -15.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds