Wall clock time and date at job start Mon Mar 8 2021 08:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86295 * 109.47133 * 2 1 4 4 C 1.50707 * 109.47121 * 240.00126 * 2 1 3 5 5 C 1.33327 * 125.95112 * 300.00030 * 4 2 1 6 6 N 1.32117 * 114.57651 * 180.29222 * 5 4 2 7 7 C 1.29692 * 116.86604 * 359.48172 * 6 5 4 8 8 N 1.38610 * 124.94302 * 180.22594 * 7 6 5 9 9 C 1.46496 * 120.00635 * 0.30799 * 8 7 6 10 10 C 1.52999 * 109.47085 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.47087 * 54.99905 * 10 9 8 12 12 C 1.53003 * 109.46997 * 174.99894 * 10 9 8 13 13 C 1.52999 * 109.46997 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46879 * 299.99661 * 13 12 10 15 15 H 1.08999 * 109.47547 * 300.00068 * 14 13 12 16 16 C 1.53006 * 109.46753 * 180.02562 * 14 13 12 17 17 O 1.42901 * 109.46882 * 175.00211 * 16 14 13 18 18 C 1.52993 * 109.47112 * 60.00466 * 14 13 12 19 19 C 1.53000 * 109.46879 * 294.99555 * 10 9 8 20 20 S 1.70958 * 110.10005 * 0.49373 * 7 6 5 21 21 H 0.96705 * 113.99977 * 60.00448 * 1 2 3 22 22 H 1.08994 * 109.47156 * 120.00197 * 2 1 3 23 23 H 1.48501 * 109.99891 * 59.99948 * 3 2 1 24 24 H 1.48497 * 110.00208 * 181.31879 * 3 2 1 25 25 H 1.08002 * 122.70820 * 0.02562 * 5 4 2 26 26 H 0.97009 * 119.99549 * 180.30629 * 8 7 6 27 27 H 1.09000 * 109.46741 * 299.99948 * 9 8 7 28 28 H 1.08993 * 109.47028 * 59.99709 * 9 8 7 29 29 H 1.08997 * 109.46861 * 299.99819 * 12 10 9 30 30 H 1.09005 * 109.47270 * 59.99640 * 12 10 9 31 31 H 1.08999 * 109.47087 * 60.00011 * 13 12 10 32 32 H 1.09004 * 109.47047 * 179.97438 * 13 12 10 33 33 H 1.08997 * 109.47044 * 295.00289 * 16 14 13 34 34 H 1.08994 * 109.47077 * 55.00250 * 16 14 13 35 35 H 0.96701 * 114.00014 * 179.97438 * 17 16 14 36 36 H 1.08999 * 109.47238 * 59.99414 * 18 14 13 37 37 H 1.08998 * 109.47448 * 179.97438 * 18 14 13 38 38 H 1.08992 * 109.47213 * 300.00046 * 19 10 9 39 39 H 1.08995 * 109.47181 * 60.00426 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6835 -1.9788 -1.5581 6 7 2.2430 -2.3740 -2.6878 7 6 2.9433 -1.4943 -3.3341 8 7 3.5970 -1.7259 -4.5342 9 6 3.5193 -3.0443 -5.1682 10 6 4.3215 -3.0317 -6.4710 11 1 5.3418 -2.7074 -6.2664 12 6 4.3443 -4.4397 -7.0695 13 6 5.1470 -4.4273 -8.3719 14 6 4.4947 -3.4621 -9.3638 15 1 3.4744 -3.7863 -9.5689 16 6 5.2971 -3.4502 -10.6665 17 8 4.6249 -2.6396 -11.6325 18 6 4.4719 -2.0542 -8.7654 19 6 3.6686 -2.0667 -7.4626 20 16 2.9488 -0.0097 -2.4863 21 1 -0.3933 0.4417 -0.7651 22 1 1.7923 -0.5138 0.8899 23 1 1.5614 2.4678 1.2085 24 1 3.5345 1.7703 -0.0321 25 1 1.0779 -2.6317 -0.9470 26 1 4.1060 -1.0149 -4.9543 27 1 3.9309 -3.7961 -4.4948 28 1 2.4780 -3.2822 -5.3854 29 1 4.8094 -5.1272 -6.3630 30 1 3.3240 -4.7641 -7.2741 31 1 6.1673 -4.1031 -8.1668 32 1 5.1637 -5.4304 -8.7980 33 1 6.2902 -3.0424 -10.4778 34 1 5.3884 -4.4677 -11.0463 35 1 5.0784 -2.5861 -12.4849 36 1 5.4922 -1.7300 -8.5603 37 1 4.0076 -1.3665 -9.4722 38 1 2.6484 -2.3911 -7.6672 39 1 3.6523 -1.0637 -7.0363 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14939084_15704118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:35:54 Heat of formation + Delta-G solvation = -51.757488 kcal Electronic energy + Delta-G solvation = -20119.722172 eV Core-core repulsion = 16961.700226 eV Total energy + Delta-G solvation = -3158.021947 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.79504 -40.20199 -38.14757 -37.63618 -36.35824 -33.19871 -31.84307 -31.13132 -28.40355 -26.39721 -25.17147 -24.14191 -23.59432 -21.86652 -20.95242 -20.60734 -19.66382 -18.29525 -18.06013 -17.11323 -16.67279 -16.40320 -16.11036 -15.86061 -15.73199 -15.64363 -15.16763 -14.94897 -14.79552 -14.65198 -14.06990 -13.95526 -13.56093 -13.22575 -12.97274 -12.83992 -12.57972 -12.31625 -12.17453 -12.03708 -11.99111 -11.52278 -11.28869 -11.23813 -11.07543 -10.87478 -10.72636 -10.21553 -10.10393 -8.69247 -5.10718 0.02320 0.07923 0.73611 1.29317 1.61119 1.93223 2.09176 2.17538 3.14649 3.45771 3.49462 3.61208 3.65209 3.75868 3.96431 4.03256 4.07599 4.18916 4.32886 4.36736 4.40264 4.46106 4.51434 4.53363 4.60121 4.68693 4.73888 4.79651 4.82727 4.96896 5.03593 5.09336 5.10854 5.14817 5.22170 5.35389 5.43785 5.85848 6.06882 6.55460 6.63881 7.05936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.010 4.010 3 Si 0.655 3.345 4 C -0.309 4.309 5 C 0.120 3.880 6 N -0.552 5.552 7 C 0.327 3.673 8 N -0.692 5.692 9 C 0.139 3.861 10 C -0.100 4.100 11 H 0.078 0.922 12 C -0.109 4.109 13 C -0.112 4.112 14 C -0.088 4.088 15 H 0.078 0.922 16 C 0.078 3.922 17 O -0.574 6.574 18 C -0.110 4.110 19 C -0.115 4.115 20 S 0.084 5.916 21 H 0.380 0.620 22 H 0.121 0.879 23 H -0.236 1.236 24 H -0.241 1.241 25 H 0.176 0.824 26 H 0.414 0.586 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.380 0.620 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.433 0.909 -4.032 4.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.124 4.124 3 Si 0.556 3.444 4 C -0.431 4.431 5 C -0.031 4.031 6 N -0.277 5.277 7 C -0.044 4.044 8 N -0.331 5.331 9 C 0.013 3.987 10 C -0.119 4.119 11 H 0.096 0.904 12 C -0.147 4.147 13 C -0.150 4.150 14 C -0.107 4.107 15 H 0.097 0.903 16 C 0.000 4.000 17 O -0.379 6.379 18 C -0.148 4.148 19 C -0.153 4.153 20 S 0.332 5.668 21 H 0.227 0.773 22 H 0.138 0.862 23 H -0.159 1.159 24 H -0.165 1.165 25 H 0.193 0.807 26 H 0.251 0.749 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.227 0.773 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.981 1.532 -3.022 4.513 hybrid contribution 0.256 -1.049 -0.056 1.081 sum 3.237 0.483 -3.079 4.493 Atomic orbital electron populations 1.86508 1.16931 1.81695 1.49127 1.24105 0.84799 1.08874 0.94629 0.94961 0.81991 0.78152 0.89335 1.25560 1.13382 0.99359 1.04839 1.21324 0.96949 0.92997 0.91797 1.66496 1.17212 1.33527 1.10505 1.23741 0.95025 0.93386 0.92216 1.44085 1.54573 1.15055 1.19425 1.21478 1.00960 0.83354 0.92909 1.21458 0.99814 0.96950 0.93719 0.90396 1.21454 1.01224 0.95402 0.96600 1.21503 0.99380 0.99233 0.94894 1.21171 1.00370 0.96224 0.92930 0.90347 1.22245 0.94828 0.93737 0.89167 1.86473 1.53113 1.72215 1.26110 1.21525 1.00355 0.96491 0.96401 1.21633 0.99765 0.98799 0.95071 1.83955 1.51817 1.13922 1.17065 0.77267 0.86191 1.15936 1.16545 0.80748 0.74867 0.91346 0.91224 0.91238 0.91270 0.91633 0.91426 0.93697 0.93663 0.77290 0.92155 0.91015 0.91457 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.30 12.87 -35.23 -0.45 -0.76 16 2 C -0.01 0.00 2.99 36.01 0.11 0.10 16 3 Si 0.66 -0.23 31.05 -169.99 -5.28 -5.50 16 4 C -0.31 -0.37 5.74 -36.02 -0.21 -0.58 16 5 C 0.12 0.29 11.22 -19.14 -0.21 0.08 16 6 N -0.55 -1.94 10.14 -15.21 -0.15 -2.09 16 7 C 0.33 0.56 8.09 -87.68 -0.71 -0.14 16 8 N -0.69 0.33 5.44 -62.30 -0.34 -0.01 16 9 C 0.14 -0.11 5.34 -4.04 -0.02 -0.13 16 10 C -0.10 0.22 2.22 -90.62 -0.20 0.02 16 11 H 0.08 -0.18 8.14 -51.93 -0.42 -0.61 16 12 C -0.11 0.23 5.20 -26.73 -0.14 0.09 16 13 C -0.11 0.23 5.20 -26.73 -0.14 0.10 16 14 C -0.09 0.09 2.43 -90.62 -0.22 -0.13 16 15 H 0.08 0.02 8.14 -51.93 -0.42 -0.41 16 16 C 0.08 -0.08 6.43 37.16 0.24 0.16 16 17 O -0.57 -0.17 13.20 -35.23 -0.46 -0.64 16 18 C -0.11 0.11 5.10 -26.70 -0.14 -0.02 16 19 C -0.12 0.20 5.08 -26.70 -0.14 0.07 16 20 S 0.08 0.03 20.57 -107.50 -2.21 -2.18 16 21 H 0.38 -1.14 8.70 45.56 0.40 -0.75 16 22 H 0.12 0.05 7.96 -51.93 -0.41 -0.37 16 23 H -0.24 -0.53 7.11 56.52 0.40 -0.12 16 24 H -0.24 -0.45 7.11 56.52 0.40 -0.05 16 25 H 0.18 0.23 8.06 -52.49 -0.42 -0.19 16 26 H 0.41 -1.00 7.78 -40.82 -0.32 -1.32 16 27 H 0.07 0.02 8.14 -51.93 -0.42 -0.41 16 28 H 0.07 0.03 8.14 -51.93 -0.42 -0.40 16 29 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 30 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 31 H 0.06 -0.15 8.14 -51.93 -0.42 -0.57 16 32 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 33 H 0.04 -0.08 8.14 -51.93 -0.42 -0.50 16 34 H 0.05 -0.08 8.14 -51.93 -0.42 -0.50 16 35 H 0.38 -1.41 9.12 45.56 0.42 -0.99 16 36 H 0.06 -0.07 8.14 -51.93 -0.42 -0.50 16 37 H 0.07 0.03 7.82 -51.93 -0.41 -0.37 16 38 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 39 H 0.06 -0.13 7.18 -51.93 -0.37 -0.51 16 LS Contribution 326.86 15.07 4.93 4.93 Total: 0.00 -6.21 326.86 -11.15 -17.36 By element: Atomic # 1 Polarization: -5.33 SS G_CDS: -5.39 Total: -10.72 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -1.78 Total: -0.38 kcal Atomic # 7 Polarization: -1.61 SS G_CDS: -0.49 Total: -2.10 kcal Atomic # 8 Polarization: -0.48 SS G_CDS: -0.92 Total: -1.39 kcal Atomic # 14 Polarization: -0.23 SS G_CDS: -5.28 Total: -5.50 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.21 Total: -2.18 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -6.21 -11.15 -17.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14939084_15704118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.400 kcal (2) G-P(sol) polarization free energy of solvation -6.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds