Wall clock time and date at job start Mon Mar 8 2021 08:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86295 * 109.47133 * 2 1 4 4 C 1.50707 * 109.47121 * 240.00126 * 2 1 3 5 5 C 1.33327 * 125.95112 * 300.00030 * 4 2 1 6 6 N 1.32117 * 114.57651 * 180.29222 * 5 4 2 7 7 C 1.29692 * 116.86604 * 359.48172 * 6 5 4 8 8 N 1.38610 * 124.94302 * 180.22594 * 7 6 5 9 9 C 1.46496 * 120.00635 * 0.30799 * 8 7 6 10 10 C 1.52999 * 109.47085 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.47087 * 54.99905 * 10 9 8 12 12 C 1.53003 * 109.46997 * 174.99894 * 10 9 8 13 13 C 1.52999 * 109.46997 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46879 * 299.99661 * 13 12 10 15 15 H 1.08999 * 109.47547 * 300.00068 * 14 13 12 16 16 C 1.53006 * 109.46753 * 180.02562 * 14 13 12 17 17 O 1.42901 * 109.46882 * 175.00211 * 16 14 13 18 18 C 1.52993 * 109.47112 * 60.00466 * 14 13 12 19 19 C 1.53000 * 109.46879 * 294.99555 * 10 9 8 20 20 S 1.70958 * 110.10005 * 0.49373 * 7 6 5 21 21 H 0.96705 * 113.99977 * 60.00448 * 1 2 3 22 22 H 1.08994 * 109.47156 * 120.00197 * 2 1 3 23 23 H 1.48501 * 109.99891 * 59.99948 * 3 2 1 24 24 H 1.48497 * 110.00208 * 181.31879 * 3 2 1 25 25 H 1.08002 * 122.70820 * 0.02562 * 5 4 2 26 26 H 0.97009 * 119.99549 * 180.30629 * 8 7 6 27 27 H 1.09000 * 109.46741 * 299.99948 * 9 8 7 28 28 H 1.08993 * 109.47028 * 59.99709 * 9 8 7 29 29 H 1.08997 * 109.46861 * 299.99819 * 12 10 9 30 30 H 1.09005 * 109.47270 * 59.99640 * 12 10 9 31 31 H 1.08999 * 109.47087 * 60.00011 * 13 12 10 32 32 H 1.09004 * 109.47047 * 179.97438 * 13 12 10 33 33 H 1.08997 * 109.47044 * 295.00289 * 16 14 13 34 34 H 1.08994 * 109.47077 * 55.00250 * 16 14 13 35 35 H 0.96701 * 114.00014 * 179.97438 * 17 16 14 36 36 H 1.08999 * 109.47238 * 59.99414 * 18 14 13 37 37 H 1.08998 * 109.47448 * 179.97438 * 18 14 13 38 38 H 1.08992 * 109.47213 * 300.00046 * 19 10 9 39 39 H 1.08995 * 109.47181 * 60.00426 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6835 -1.9788 -1.5581 6 7 2.2430 -2.3740 -2.6878 7 6 2.9433 -1.4943 -3.3341 8 7 3.5970 -1.7259 -4.5342 9 6 3.5193 -3.0443 -5.1682 10 6 4.3215 -3.0317 -6.4710 11 1 5.3418 -2.7074 -6.2664 12 6 4.3443 -4.4397 -7.0695 13 6 5.1470 -4.4273 -8.3719 14 6 4.4947 -3.4621 -9.3638 15 1 3.4744 -3.7863 -9.5689 16 6 5.2971 -3.4502 -10.6665 17 8 4.6249 -2.6396 -11.6325 18 6 4.4719 -2.0542 -8.7654 19 6 3.6686 -2.0667 -7.4626 20 16 2.9488 -0.0097 -2.4863 21 1 -0.3933 0.4417 -0.7651 22 1 1.7923 -0.5138 0.8899 23 1 1.5614 2.4678 1.2085 24 1 3.5345 1.7703 -0.0321 25 1 1.0779 -2.6317 -0.9470 26 1 4.1060 -1.0149 -4.9543 27 1 3.9309 -3.7961 -4.4948 28 1 2.4780 -3.2822 -5.3854 29 1 4.8094 -5.1272 -6.3630 30 1 3.3240 -4.7641 -7.2741 31 1 6.1673 -4.1031 -8.1668 32 1 5.1637 -5.4304 -8.7980 33 1 6.2902 -3.0424 -10.4778 34 1 5.3884 -4.4677 -11.0463 35 1 5.0784 -2.5861 -12.4849 36 1 5.4922 -1.7300 -8.5603 37 1 4.0076 -1.3665 -9.4722 38 1 2.6484 -2.3911 -7.6672 39 1 3.6523 -1.0637 -7.0363 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14939084_15704118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:35:54 Heat of formation + Delta-G solvation = -50.586013 kcal Electronic energy + Delta-G solvation = -20119.671374 eV Core-core repulsion = 16961.700226 eV Total energy + Delta-G solvation = -3157.971148 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.84487 -40.15139 -38.14041 -37.61719 -36.34487 -33.15156 -31.72607 -31.18298 -28.36838 -26.44689 -25.14693 -24.13645 -23.50994 -21.78135 -20.87966 -20.64347 -19.69226 -18.25100 -18.08884 -17.11855 -16.66518 -16.38985 -16.11677 -15.80466 -15.71215 -15.67037 -15.11474 -14.94529 -14.79481 -14.60103 -14.04854 -14.01701 -13.49656 -13.10644 -12.91882 -12.84596 -12.50171 -12.45555 -12.05248 -12.02872 -11.94424 -11.41644 -11.28203 -11.13443 -11.02164 -10.82893 -10.74619 -10.30064 -10.17061 -8.74014 -5.10828 -0.06542 0.01616 0.65803 1.26761 1.57777 1.88161 1.96907 2.19043 3.30302 3.49782 3.57805 3.72399 3.73832 3.77318 3.93074 4.11663 4.17414 4.30456 4.44658 4.48030 4.49034 4.51139 4.58167 4.64250 4.69883 4.70993 4.77452 4.78489 4.94307 5.04459 5.08929 5.15267 5.22366 5.24388 5.32431 5.44927 5.54530 5.81263 6.13562 6.72211 6.88363 7.00301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.014 4.014 3 Si 0.731 3.269 4 C -0.309 4.309 5 C 0.104 3.896 6 N -0.581 5.581 7 C 0.314 3.686 8 N -0.684 5.684 9 C 0.145 3.855 10 C -0.088 4.088 11 H 0.087 0.913 12 C -0.109 4.109 13 C -0.107 4.107 14 C -0.090 4.090 15 H 0.062 0.938 16 C 0.075 3.925 17 O -0.596 6.596 18 C -0.106 4.106 19 C -0.111 4.111 20 S 0.114 5.886 21 H 0.395 0.605 22 H 0.118 0.882 23 H -0.271 1.271 24 H -0.268 1.268 25 H 0.177 0.823 26 H 0.423 0.577 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.395 0.605 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.140 1.334 -4.321 5.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.127 4.127 3 Si 0.634 3.366 4 C -0.432 4.432 5 C -0.047 4.047 6 N -0.308 5.308 7 C -0.057 4.057 8 N -0.324 5.324 9 C 0.019 3.981 10 C -0.107 4.107 11 H 0.106 0.894 12 C -0.147 4.147 13 C -0.145 4.145 14 C -0.108 4.108 15 H 0.080 0.920 16 C -0.002 4.002 17 O -0.404 6.404 18 C -0.144 4.144 19 C -0.149 4.149 20 S 0.363 5.637 21 H 0.245 0.755 22 H 0.135 0.865 23 H -0.197 1.197 24 H -0.194 1.194 25 H 0.194 0.806 26 H 0.263 0.737 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.244 0.756 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.688 1.957 -3.354 5.355 hybrid contribution 0.028 -1.168 0.032 1.169 sum 3.716 0.789 -3.322 5.046 Atomic orbital electron populations 1.86475 1.16951 1.82127 1.50257 1.24238 0.84903 1.09378 0.94209 0.94081 0.79170 0.75940 0.87420 1.25704 1.13129 0.99189 1.05200 1.21432 0.97600 0.93684 0.91980 1.66487 1.18300 1.34755 1.11282 1.23973 0.95027 0.93912 0.92745 1.44134 1.54084 1.15454 1.18776 1.21390 1.00352 0.83080 0.93267 1.21353 0.99858 0.96855 0.92651 0.89444 1.21457 1.00986 0.95472 0.96781 1.21466 0.99517 0.99108 0.94412 1.21178 0.99672 0.96460 0.93509 0.91979 1.22321 0.95023 0.93998 0.88889 1.86434 1.54147 1.72551 1.27313 1.21470 1.00587 0.96128 0.96187 1.21587 0.99068 0.99260 0.94949 1.83783 1.51141 1.12642 1.16107 0.75507 0.86461 1.19679 1.19387 0.80574 0.73697 0.92244 0.92529 0.90775 0.91906 0.90887 0.91104 0.92780 0.93063 0.75570 0.91446 0.92666 0.92580 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.52 12.87 -148.98 -1.92 -2.44 16 2 C -0.01 -0.01 2.99 71.24 0.21 0.20 16 3 Si 0.73 -0.66 31.05 68.60 2.13 1.47 16 4 C -0.31 -0.76 5.74 24.58 0.14 -0.62 16 5 C 0.10 0.58 11.22 83.54 0.94 1.51 16 6 N -0.58 -4.51 10.14 -202.03 -2.05 -6.56 16 7 C 0.31 1.13 8.09 179.32 1.45 2.58 16 8 N -0.68 0.71 5.44 -351.03 -1.91 -1.20 16 9 C 0.14 -0.17 5.34 86.38 0.46 0.29 16 10 C -0.09 0.41 2.22 -10.79 -0.02 0.39 16 11 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 12 C -0.11 0.47 5.20 30.60 0.16 0.63 16 13 C -0.11 0.49 5.20 30.59 0.16 0.65 16 14 C -0.09 0.16 2.43 -10.79 -0.03 0.13 16 15 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 16 C 0.08 -0.16 6.43 71.98 0.46 0.30 16 17 O -0.60 -0.51 13.20 -148.98 -1.97 -2.48 16 18 C -0.11 0.21 5.10 30.61 0.16 0.36 16 19 C -0.11 0.38 5.08 30.61 0.16 0.54 16 20 S 0.11 0.05 20.57 -56.49 -1.16 -1.11 16 21 H 0.39 -2.58 8.70 -74.05 -0.64 -3.22 16 22 H 0.12 0.12 7.96 -2.39 -0.02 0.10 16 23 H -0.27 -1.34 7.11 99.48 0.71 -0.63 16 24 H -0.27 -0.95 7.11 99.48 0.71 -0.24 16 25 H 0.18 0.68 8.06 -2.91 -0.02 0.65 16 26 H 0.42 -2.34 7.78 -92.70 -0.72 -3.06 16 27 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 28 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 30 H 0.06 -0.18 8.14 -2.38 -0.02 -0.20 16 31 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.07 -0.35 8.14 -2.38 -0.02 -0.37 16 33 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.39 -2.88 9.12 -74.06 -0.68 -3.55 16 36 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.05 0.09 7.82 -2.39 -0.02 0.07 16 38 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.07 -0.33 7.18 -2.39 -0.02 -0.34 16 Total: 0.00 -14.48 326.86 -3.57 -18.05 By element: Atomic # 1 Polarization: -11.76 SS G_CDS: -0.94 Total: -12.70 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 4.25 Total: 6.97 kcal Atomic # 7 Polarization: -3.80 SS G_CDS: -3.96 Total: -7.76 kcal Atomic # 8 Polarization: -1.04 SS G_CDS: -3.88 Total: -4.92 kcal Atomic # 14 Polarization: -0.66 SS G_CDS: 2.13 Total: 1.47 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -1.16 Total: -1.11 kcal Total: -14.48 -3.57 -18.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14939084_15704118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.536 kcal (2) G-P(sol) polarization free energy of solvation -14.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds