Wall clock time and date at job start Mon Mar 8 2021 08:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33327 * 125.95365 * 2 1 4 4 C 1.50696 * 122.70940 * 359.97438 * 3 2 1 5 5 O 1.42903 * 109.47131 * 329.99616 * 4 3 2 6 6 Si 1.86305 * 109.47185 * 210.00157 * 4 3 2 7 7 N 1.32122 * 114.57963 * 180.24195 * 3 2 1 8 8 C 1.29693 * 116.86464 * 359.48832 * 7 3 2 9 9 N 1.38602 * 124.94510 * 180.22310 * 8 7 3 10 10 C 1.46500 * 119.99577 * 180.27815 * 9 8 7 11 11 C 1.53003 * 109.47156 * 180.02562 * 10 9 8 12 12 H 1.08997 * 109.47339 * 54.99232 * 11 10 9 13 13 C 1.52998 * 109.47539 * 175.00105 * 11 10 9 14 14 C 1.52993 * 109.47533 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.46841 * 299.99678 * 14 13 11 16 16 H 1.08994 * 109.47144 * 300.00126 * 15 14 13 17 17 C 1.53003 * 109.47063 * 179.97438 * 15 14 13 18 18 O 1.42901 * 109.47093 * 174.99987 * 17 15 14 19 19 C 1.53004 * 109.47077 * 60.00287 * 15 14 13 20 20 C 1.53003 * 109.46690 * 299.99635 * 19 15 14 21 21 S 1.70960 * 110.09916 * 0.48547 * 8 7 3 22 22 H 1.08995 * 109.46741 * 90.00394 * 1 2 3 23 23 H 1.09003 * 109.47278 * 210.00244 * 1 2 3 24 24 H 1.08996 * 109.47250 * 330.00395 * 1 2 3 25 25 H 1.08999 * 109.47358 * 89.99976 * 4 3 2 26 26 H 0.96700 * 114.00311 * 300.00591 * 5 4 3 27 27 H 1.48499 * 109.99670 * 58.67633 * 6 4 3 28 28 H 1.48497 * 110.00233 * 179.97438 * 6 4 3 29 29 H 0.97000 * 120.00750 * 0.27773 * 9 8 7 30 30 H 1.09007 * 109.47354 * 299.99277 * 10 9 8 31 31 H 1.08998 * 109.47492 * 59.99991 * 10 9 8 32 32 H 1.09008 * 109.46797 * 299.99894 * 13 11 10 33 33 H 1.08997 * 109.47517 * 59.99237 * 13 11 10 34 34 H 1.08997 * 109.47315 * 59.99145 * 14 13 11 35 35 H 1.08996 * 109.47413 * 179.97438 * 14 13 11 36 36 H 1.08999 * 109.47485 * 295.00604 * 17 15 14 37 37 H 1.09004 * 109.47056 * 55.00314 * 17 15 14 38 38 H 0.96698 * 113.99903 * 180.02562 * 18 17 15 39 39 H 1.08994 * 109.47265 * 59.99913 * 19 15 14 40 40 H 1.08999 * 109.46931 * 180.02562 * 19 15 14 41 41 H 1.08994 * 109.47493 * 300.00138 * 20 19 15 42 42 H 1.08996 * 109.47052 * 180.02562 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4829 -0.0006 5 8 0.4817 2.5019 -0.6748 6 14 2.9328 3.6146 -0.8787 7 7 3.5851 0.8187 -0.0051 8 6 3.9315 -0.4311 0.0010 9 7 5.2384 -0.8927 0.0015 10 6 5.5065 -2.3329 0.0025 11 6 7.0180 -2.5704 0.0036 12 1 7.4679 -2.0439 0.8453 13 6 7.2988 -4.0690 0.1303 14 6 8.8102 -4.3066 0.1308 15 6 9.4088 -3.7844 -1.1769 16 1 8.9585 -4.3108 -2.0184 17 6 10.9204 -4.0213 -1.1762 18 8 11.4627 -3.6409 -2.4424 19 6 9.1281 -2.2856 -1.3036 20 6 7.6166 -2.0482 -1.3041 21 16 2.5413 -1.4261 0.0008 22 1 -0.3632 -0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5137 25 1 1.6089 2.8217 1.0269 26 1 0.5242 2.2118 -1.5962 27 1 3.1466 3.1450 -2.2712 28 1 2.4033 5.0020 -0.8867 29 1 5.9756 -0.2622 0.0012 30 1 5.0677 -2.7836 0.8928 31 1 5.0680 -2.7848 -0.8872 32 1 6.8718 -4.4412 1.0618 33 1 6.8488 -4.5955 -0.7113 34 1 9.2605 -3.7800 0.9722 35 1 9.0102 -5.3741 0.2215 36 1 11.3814 -3.4244 -0.3893 37 1 11.1226 -5.0773 -0.9968 38 1 12.4190 -3.7648 -2.5139 39 1 9.5784 -1.7592 -0.4622 40 1 9.5542 -1.9138 -2.2354 41 1 7.1663 -2.5746 -2.1455 42 1 7.4166 -0.9806 -1.3948 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14939084_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:35:57 Heat of formation + Delta-G solvation = -55.503436 kcal Electronic energy + Delta-G solvation = -22157.194737 eV Core-core repulsion = 18843.472735 eV Total energy + Delta-G solvation = -3313.722002 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.01403 -40.39839 -38.28307 -37.61111 -36.42500 -33.51571 -32.22836 -31.85961 -29.44707 -27.85340 -25.61364 -24.83407 -24.30819 -23.50543 -21.94214 -20.99629 -20.41398 -19.04256 -18.28938 -17.95672 -17.37020 -16.79628 -16.47814 -16.29405 -15.86725 -15.70732 -15.57761 -15.17247 -14.98943 -14.75657 -14.31571 -14.10462 -13.80844 -13.69648 -13.61445 -13.29493 -13.25556 -13.02492 -12.68736 -12.65292 -12.30171 -12.21093 -12.05973 -11.75231 -11.55767 -11.28473 -11.25263 -11.03121 -10.87948 -10.54254 -10.41398 -9.94310 -8.57518 -4.63403 0.08387 0.23310 0.84554 1.43122 1.86442 1.92770 2.01198 2.16136 3.12198 3.33641 3.42750 3.54902 3.56439 3.61668 3.92094 3.99672 4.13103 4.21842 4.25722 4.28206 4.33910 4.39570 4.42289 4.45628 4.51365 4.56184 4.60054 4.62587 4.78172 4.79628 4.90901 4.95226 4.98732 5.05469 5.08467 5.14346 5.17760 5.32397 5.34368 5.40177 5.61010 6.28649 6.42330 6.63029 7.00648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.244 4.244 3 C 0.070 3.930 4 C -0.042 4.042 5 O -0.526 6.526 6 Si 0.721 3.279 7 N -0.541 5.541 8 C 0.321 3.679 9 N -0.692 5.692 10 C 0.124 3.876 11 C -0.096 4.096 12 H 0.082 0.918 13 C -0.110 4.110 14 C -0.112 4.112 15 C -0.089 4.089 16 H 0.078 0.922 17 C 0.078 3.922 18 O -0.574 6.574 19 C -0.110 4.110 20 C -0.116 4.116 21 S 0.098 5.902 22 H 0.068 0.932 23 H 0.059 0.941 24 H 0.091 0.909 25 H 0.124 0.876 26 H 0.376 0.624 27 H -0.268 1.268 28 H -0.261 1.261 29 H 0.413 0.587 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.380 0.620 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.593 -3.935 1.730 5.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.367 4.367 3 C -0.061 4.061 4 C -0.154 4.154 5 O -0.332 6.332 6 Si 0.621 3.379 7 N -0.268 5.268 8 C -0.050 4.050 9 N -0.333 5.333 10 C 0.000 4.000 11 C -0.114 4.114 12 H 0.101 0.899 13 C -0.148 4.148 14 C -0.150 4.150 15 C -0.107 4.107 16 H 0.096 0.904 17 C 0.000 4.000 18 O -0.379 6.379 19 C -0.148 4.148 20 C -0.154 4.154 21 S 0.347 5.653 22 H 0.086 0.914 23 H 0.078 0.922 24 H 0.110 0.890 25 H 0.142 0.858 26 H 0.223 0.777 27 H -0.193 1.193 28 H -0.187 1.187 29 H 0.252 0.748 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.227 0.773 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.169 -3.937 1.511 5.275 hybrid contribution -0.071 0.178 -0.470 0.507 sum 3.098 -3.760 1.041 4.982 Atomic orbital electron populations 1.20197 0.86533 1.03184 1.02530 1.25090 1.01271 0.92748 1.17582 1.20082 0.86871 0.97073 1.02025 1.24456 0.91942 0.95422 1.03626 1.86602 1.28567 1.89105 1.28880 0.93636 0.86188 0.76366 0.81679 1.65732 1.16976 1.16429 1.27665 1.23269 0.91831 0.91417 0.98507 1.43966 1.01717 1.07314 1.80326 1.21649 0.97054 0.79157 1.02136 1.21380 0.92921 0.97620 0.99517 0.89940 1.21473 0.96276 0.94365 1.02671 1.21495 0.95208 1.01270 0.97026 1.21178 0.93709 0.97229 0.98602 0.90375 1.22243 0.94200 0.98244 0.85297 1.86473 1.27218 1.89120 1.35103 1.21514 0.95376 0.95226 1.02642 1.21635 0.95879 1.01112 0.96769 1.83984 0.96628 1.10623 1.74077 0.91379 0.92185 0.89026 0.85823 0.77659 1.19272 1.18659 0.74818 0.91282 0.91320 0.91160 0.91285 0.91528 0.91372 0.93650 0.93673 0.77265 0.92036 0.90975 0.91554 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.04 8.95 36.01 0.32 0.28 16 2 C -0.24 -0.54 6.50 -36.02 -0.23 -0.77 16 3 C 0.07 0.19 5.92 -84.18 -0.50 -0.31 16 4 C -0.04 -0.07 2.82 36.00 0.10 0.03 16 5 O -0.53 -0.78 9.90 -35.23 -0.35 -1.12 16 6 Si 0.72 1.20 32.08 -169.99 -5.45 -4.25 16 7 N -0.54 -1.67 8.94 -11.37 -0.10 -1.77 16 8 C 0.32 0.59 8.24 -87.68 -0.72 -0.13 16 9 N -0.69 0.39 5.44 -62.30 -0.34 0.05 16 10 C 0.12 -0.28 4.92 -4.04 -0.02 -0.30 16 11 C -0.10 0.28 2.23 -90.62 -0.20 0.08 16 12 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 13 C -0.11 0.34 5.20 -26.74 -0.14 0.20 16 14 C -0.11 0.30 5.20 -26.73 -0.14 0.16 16 15 C -0.09 0.12 2.43 -90.61 -0.22 -0.10 16 16 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 17 C 0.08 -0.10 6.43 37.16 0.24 0.14 16 18 O -0.57 -0.11 13.19 -35.23 -0.46 -0.57 16 19 C -0.11 0.13 5.10 -26.73 -0.14 -0.01 16 20 C -0.12 0.23 5.08 -26.73 -0.14 0.09 16 21 S 0.10 0.12 22.32 -107.50 -2.40 -2.28 16 22 H 0.07 -0.01 8.14 -51.93 -0.42 -0.44 16 23 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 24 H 0.09 0.10 6.62 -51.93 -0.34 -0.24 16 25 H 0.12 0.10 7.96 -51.93 -0.41 -0.32 16 26 H 0.38 -0.30 8.68 45.56 0.40 0.10 16 27 H -0.27 -1.20 7.11 56.52 0.40 -0.80 16 28 H -0.26 -1.01 7.11 56.52 0.40 -0.61 16 29 H 0.41 -0.52 7.78 -40.82 -0.32 -0.84 16 30 H 0.07 -0.16 8.14 -51.92 -0.42 -0.59 16 31 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 32 H 0.07 -0.25 8.14 -51.92 -0.42 -0.67 16 33 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 34 H 0.07 -0.18 8.14 -51.93 -0.42 -0.61 16 35 H 0.07 -0.19 8.14 -51.93 -0.42 -0.62 16 36 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 37 H 0.04 -0.09 8.14 -51.93 -0.42 -0.51 16 38 H 0.38 -1.44 9.12 45.56 0.42 -1.02 16 39 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 40 H 0.07 0.04 7.82 -51.93 -0.41 -0.37 16 41 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 42 H 0.06 -0.12 7.18 -51.93 -0.37 -0.49 16 LS Contribution 344.25 15.07 5.19 5.19 Total: 0.00 -5.74 344.25 -11.86 -17.61 By element: Atomic # 1 Polarization: -6.07 SS G_CDS: -6.16 Total: -12.23 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -1.78 Total: -0.62 kcal Atomic # 7 Polarization: -1.28 SS G_CDS: -0.44 Total: -1.72 kcal Atomic # 8 Polarization: -0.88 SS G_CDS: -0.81 Total: -1.69 kcal Atomic # 14 Polarization: 1.20 SS G_CDS: -5.45 Total: -4.25 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.40 Total: -2.28 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -5.74 -11.86 -17.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14939084_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.897 kcal (2) G-P(sol) polarization free energy of solvation -5.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds