Wall clock time and date at job start Mon Mar 8 2021 08:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86296 * 109.47118 * 2 1 4 4 C 1.50701 * 109.47146 * 119.99814 * 2 1 3 5 5 C 1.37988 * 120.32771 * 244.97913 * 4 2 1 6 6 N 1.32011 * 120.90209 * 179.76802 * 5 4 2 7 7 C 1.32333 * 121.64547 * 0.52319 * 6 5 4 8 8 N 1.39145 * 119.72042 * 179.75535 * 7 6 5 9 9 C 1.46498 * 119.99604 * 0.02562 * 8 7 6 10 10 C 1.52996 * 109.47059 * 179.72527 * 9 8 7 11 11 H 1.09008 * 109.47304 * 304.99667 * 10 9 8 12 12 C 1.53001 * 109.47238 * 64.99625 * 10 9 8 13 13 C 1.53003 * 109.47020 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.46963 * 299.99597 * 13 12 10 15 15 H 1.08994 * 109.47145 * 300.00580 * 14 13 12 16 16 C 1.52996 * 109.47244 * 180.02562 * 14 13 12 17 17 O 1.42907 * 109.46793 * 65.00109 * 16 14 13 18 18 C 1.53001 * 109.46923 * 60.00343 * 14 13 12 19 19 C 1.52996 * 109.47238 * 300.00062 * 18 14 13 20 20 C 1.39346 * 120.56288 * 359.47560 * 7 6 5 21 21 F 1.35101 * 120.47162 * 180.27990 * 20 7 6 22 22 C 1.38446 * 119.05995 * 0.25655 * 20 7 6 23 23 H 0.96700 * 113.99852 * 299.99907 * 1 2 3 24 24 H 1.08996 * 109.47255 * 239.99860 * 2 1 3 25 25 H 1.48501 * 110.00075 * 178.68489 * 3 2 1 26 26 H 1.48503 * 109.99814 * 299.99649 * 3 2 1 27 27 H 1.08005 * 119.54480 * 0.02562 * 5 4 2 28 28 H 0.97001 * 119.99952 * 179.71939 * 8 7 6 29 29 H 1.09004 * 109.46963 * 299.72323 * 9 8 7 30 30 H 1.08994 * 109.47567 * 59.72475 * 9 8 7 31 31 H 1.09001 * 109.47309 * 300.00020 * 12 10 9 32 32 H 1.08995 * 109.46988 * 60.00458 * 12 10 9 33 33 H 1.08997 * 109.47193 * 180.02562 * 13 12 10 34 34 H 1.08994 * 109.47663 * 59.99860 * 13 12 10 35 35 H 1.08996 * 109.47486 * 185.00019 * 16 14 13 36 36 H 1.09005 * 109.47175 * 305.00665 * 16 14 13 37 37 H 0.96702 * 113.99609 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.47309 * 180.02562 * 18 14 13 39 39 H 1.09003 * 109.47318 * 59.99630 * 18 14 13 40 40 H 1.09000 * 109.47448 * 299.99641 * 19 18 14 41 41 H 1.09002 * 109.47682 * 180.02562 * 19 18 14 42 42 H 1.07994 * 120.75921 * 180.02562 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6385 -0.0202 2.1936 6 7 3.0799 -0.6301 3.2780 7 6 2.8734 -1.9213 3.4809 8 7 3.3610 -2.5247 4.6361 9 6 4.0989 -1.7307 5.6216 10 6 4.5141 -2.6263 6.7904 11 1 3.6329 -3.1192 7.2014 12 6 5.5054 -3.6821 6.2969 13 6 5.9201 -4.5781 7.4658 14 6 6.5806 -3.7265 8.5519 15 1 7.4618 -3.2337 8.1414 16 6 6.9959 -4.6226 9.7204 17 8 8.0081 -5.5331 9.2861 18 6 5.5893 -2.6708 9.0454 19 6 5.1745 -1.7748 7.8766 20 6 2.1668 -2.6808 2.5505 21 9 1.9522 -3.9977 2.7623 22 6 1.6874 -2.0665 1.4061 23 1 -0.3933 0.4417 0.7651 24 1 1.7923 -0.5138 -0.8899 25 1 3.5346 1.7703 0.0320 26 1 1.5615 2.4678 -1.2086 27 1 2.8300 1.0344 2.0603 28 1 3.2085 -3.4700 4.7909 29 1 4.9882 -1.3072 5.1546 30 1 3.4631 -0.9253 5.9890 31 1 5.0348 -4.2890 5.5235 32 1 6.3865 -3.1892 5.8862 33 1 6.6267 -5.3300 7.1143 34 1 5.0389 -5.0710 7.8763 35 1 7.3851 -4.0061 10.5306 36 1 6.1304 -5.1831 10.0739 37 1 8.3200 -6.1332 9.9773 38 1 6.0599 -2.0638 9.8188 39 1 4.7079 -3.1636 9.4558 40 1 6.0558 -1.2818 7.4661 41 1 4.4686 -1.0223 8.2282 42 1 1.1360 -2.6288 0.6672 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14939084_17656566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:35:59 Heat of formation + Delta-G solvation = -102.641306 kcal Electronic energy + Delta-G solvation = -23957.854146 eV Core-core repulsion = 20239.019489 eV Total energy + Delta-G solvation = -3718.834657 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.97492 -41.43422 -40.23754 -38.25647 -37.60944 -36.37680 -33.60832 -33.03196 -31.73988 -31.18735 -28.19060 -26.30411 -25.37393 -24.06930 -23.57600 -22.80374 -21.61783 -20.81093 -19.34469 -18.52183 -18.32507 -18.17143 -17.55271 -17.08058 -16.49422 -16.28445 -16.02412 -15.86571 -15.67573 -15.48136 -15.39092 -14.94420 -14.79668 -14.51617 -14.33062 -14.06813 -13.90974 -13.58300 -13.40823 -13.12175 -12.86632 -12.55758 -12.48125 -12.15166 -12.06490 -11.94711 -11.42898 -11.34588 -11.13544 -11.03839 -10.80166 -10.73873 -10.68648 -10.41294 -8.76588 -4.97084 -0.09531 0.09576 1.32213 1.67434 1.99209 2.00656 2.53538 3.01736 3.25459 3.30744 3.49331 3.65222 3.67600 3.72561 3.75878 3.84882 3.99331 4.10678 4.18170 4.29894 4.42714 4.44147 4.47430 4.49550 4.51255 4.56882 4.63516 4.70836 4.72308 4.78366 4.83739 4.93495 4.97689 5.08546 5.14028 5.20047 5.23306 5.29971 5.36833 5.43894 5.53946 5.95777 6.16255 6.79669 6.86725 6.94330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.059 4.059 3 Si 0.776 3.224 4 C -0.208 4.208 5 C 0.150 3.850 6 N -0.527 5.527 7 C 0.381 3.619 8 N -0.714 5.714 9 C 0.142 3.858 10 C -0.091 4.091 11 H 0.082 0.918 12 C -0.111 4.111 13 C -0.107 4.107 14 C -0.089 4.089 15 H 0.063 0.937 16 C 0.075 3.925 17 O -0.597 6.597 18 C -0.108 4.108 19 C -0.107 4.107 20 C -0.040 4.040 21 F -0.142 7.142 22 C -0.041 4.041 23 H 0.396 0.604 24 H 0.110 0.890 25 H -0.282 1.282 26 H -0.297 1.297 27 H 0.186 0.814 28 H 0.414 0.586 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.395 0.605 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.846 2.324 4.914 5.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.169 4.169 3 Si 0.681 3.319 4 C -0.214 4.214 5 C -0.007 4.007 6 N -0.245 5.245 7 C 0.142 3.858 8 N -0.347 5.347 9 C 0.019 3.981 10 C -0.110 4.110 11 H 0.100 0.900 12 C -0.149 4.149 13 C -0.144 4.144 14 C -0.107 4.107 15 H 0.081 0.919 16 C -0.002 4.002 17 O -0.405 6.405 18 C -0.145 4.145 19 C -0.145 4.145 20 C -0.067 4.067 21 F -0.121 7.121 22 C -0.067 4.067 23 H 0.246 0.754 24 H 0.128 0.872 25 H -0.208 1.208 26 H -0.224 1.224 27 H 0.202 0.798 28 H 0.252 0.748 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.244 0.756 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.194 3.439 4.200 5.432 hybrid contribution -0.247 -2.280 -0.369 2.323 sum -0.054 1.159 3.831 4.002 Atomic orbital electron populations 1.86479 1.17211 1.82165 1.50528 1.24998 0.85236 1.10692 0.96024 0.93826 0.77964 0.74749 0.85349 1.20994 1.05623 0.94274 1.00465 1.22707 0.90858 1.00194 0.86969 1.67356 1.25657 1.07306 1.24139 1.18592 0.90616 0.89142 0.87423 1.44688 1.59142 1.12369 1.18533 1.21362 0.95462 0.93533 0.87757 1.21363 0.98836 0.96027 0.94734 0.89990 1.21566 0.98817 0.97015 0.97491 1.21462 0.99975 0.97512 0.95471 1.21177 0.98478 0.95765 0.95314 0.91864 1.22331 0.90337 0.91352 0.96223 1.86438 1.58512 1.52418 1.43168 1.21476 0.98717 0.96462 0.97895 1.21448 1.00824 0.97563 0.94637 1.18154 1.09836 0.79409 0.99258 1.91462 1.93832 1.31760 1.95028 1.21438 0.95390 0.95014 0.94862 0.75398 0.87239 1.20838 1.22444 0.79793 0.74769 0.92263 0.91312 0.92263 0.92515 0.92943 0.91713 0.92795 0.92894 0.75571 0.90808 0.91047 0.91701 0.90304 0.82905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.67 12.84 -148.98 -1.91 -1.25 16 2 C -0.06 0.12 2.82 71.24 0.20 0.32 16 3 Si 0.78 -3.13 29.83 68.60 2.05 -1.08 16 4 C -0.21 0.05 5.36 -19.76 -0.11 -0.06 16 5 C 0.15 -0.04 9.84 84.61 0.83 0.80 16 6 N -0.53 -2.01 9.57 -193.02 -1.85 -3.86 16 7 C 0.38 1.67 7.49 133.09 1.00 2.67 16 8 N -0.71 -0.89 5.44 -344.82 -1.87 -2.77 16 9 C 0.14 -0.14 5.09 86.38 0.44 0.29 16 10 C -0.09 0.31 2.22 -10.79 -0.02 0.29 16 11 H 0.08 -0.32 8.14 -2.38 -0.02 -0.33 16 12 C -0.11 0.12 5.08 30.60 0.16 0.27 16 13 C -0.11 -0.01 5.10 30.60 0.16 0.14 16 14 C -0.09 0.07 2.43 -10.79 -0.03 0.05 16 15 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 16 C 0.08 -0.10 6.43 71.98 0.46 0.36 16 17 O -0.60 -1.12 13.19 -148.98 -1.97 -3.08 16 18 C -0.11 0.45 5.20 30.59 0.16 0.61 16 19 C -0.11 0.47 5.20 30.59 0.16 0.63 16 20 C -0.04 -0.19 7.35 22.59 0.17 -0.03 16 21 F -0.14 -0.89 16.65 44.97 0.75 -0.14 16 22 C -0.04 -0.10 9.82 22.48 0.22 0.12 16 23 H 0.40 -3.65 8.70 -74.06 -0.64 -4.30 16 24 H 0.11 -0.12 7.96 -2.39 -0.02 -0.14 16 25 H -0.28 -0.20 7.11 99.48 0.71 0.51 16 26 H -0.30 -1.08 7.11 99.48 0.71 -0.38 16 27 H 0.19 -1.10 4.90 -2.91 -0.01 -1.11 16 28 H 0.41 -0.10 7.13 -92.71 -0.66 -0.76 16 29 H 0.06 0.06 8.14 -2.38 -0.02 0.04 16 30 H 0.07 -0.05 8.14 -2.39 -0.02 -0.06 16 31 H 0.06 -0.04 7.18 -2.39 -0.02 -0.05 16 32 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.05 0.21 7.82 -2.39 -0.02 0.19 16 34 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 35 H 0.05 -0.18 8.14 -2.39 -0.02 -0.19 16 36 H 0.05 -0.16 8.14 -2.38 -0.02 -0.18 16 37 H 0.39 -2.53 9.12 -74.06 -0.68 -3.20 16 38 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 39 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 40 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 41 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H 0.15 0.12 8.06 -2.91 -0.02 0.10 16 Total: 0.00 -15.09 339.73 -1.90 -16.99 By element: Atomic # 1 Polarization: -10.38 SS G_CDS: -0.89 Total: -11.27 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 3.79 Total: 6.46 kcal Atomic # 7 Polarization: -2.91 SS G_CDS: -3.72 Total: -6.63 kcal Atomic # 8 Polarization: -0.45 SS G_CDS: -3.88 Total: -4.33 kcal Atomic # 9 Polarization: -0.89 SS G_CDS: 0.75 Total: -0.14 kcal Atomic # 14 Polarization: -3.13 SS G_CDS: 2.05 Total: -1.08 kcal Total: -15.09 -1.90 -16.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14939084_17656566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.651 kcal (2) G-P(sol) polarization free energy of solvation -15.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds