Wall clock time and date at job start Mon Mar 8 2021 08:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42900 * 109.47385 * 340.16079 * 3 2 1 5 5 C 1.42902 * 114.00263 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47186 * 29.99893 * 5 4 3 7 7 C 1.52999 * 109.47056 * 150.00181 * 5 4 3 8 8 C 1.53001 * 109.46817 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47162 * 299.99587 * 8 7 5 10 10 H 1.08998 * 109.47104 * 300.00321 * 9 8 7 11 11 N 1.46496 * 109.47110 * 180.02562 * 9 8 7 12 12 C 1.38411 * 119.99929 * 155.00389 * 11 9 8 13 13 N 1.32487 * 119.21808 * 179.97438 * 12 11 9 14 14 C 1.32273 * 120.74457 * 179.97438 * 13 12 11 15 15 C 1.38605 * 119.19419 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.72226 * 179.72488 * 15 14 13 17 17 O 1.42898 * 109.47380 * 300.00086 * 16 15 14 18 18 Si 1.86295 * 109.47299 * 179.97438 * 16 15 14 19 19 C 1.38600 * 118.55909 * 359.97438 * 15 14 13 20 20 N 1.32277 * 119.19790 * 0.02562 * 19 15 14 21 21 C 1.53002 * 109.47114 * 60.00150 * 9 8 7 22 22 C 1.53001 * 109.46984 * 299.99959 * 21 9 8 23 23 H 4.38446 * 5.44380 * 179.97438 * 4 1 2 24 24 H 1.09006 * 109.47082 * 220.15957 * 3 2 1 25 25 H 1.08994 * 109.47178 * 100.15968 * 3 2 1 26 26 H 1.08998 * 109.47358 * 59.99817 * 7 5 4 27 27 H 1.09006 * 109.47072 * 299.99610 * 7 5 4 28 28 H 1.09002 * 109.46829 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47374 * 59.99743 * 8 7 5 30 30 H 0.97001 * 120.00401 * 334.99381 * 11 9 8 31 31 H 1.08000 * 120.40821 * 179.97438 * 14 13 12 32 32 H 1.09005 * 109.47181 * 60.00088 * 16 15 14 33 33 H 0.96702 * 114.00298 * 179.97438 * 17 16 15 34 34 H 1.48503 * 110.00217 * 298.68155 * 18 16 15 35 35 H 1.48497 * 110.00238 * 60.00278 * 18 16 15 36 36 H 1.08000 * 120.40289 * 179.97438 * 19 15 14 37 37 H 1.08998 * 109.46995 * 60.00105 * 21 9 8 38 38 H 1.08999 * 109.47535 * 180.02562 * 21 9 8 39 39 H 1.08998 * 109.47374 * 299.99914 * 22 21 9 40 40 H 1.09004 * 109.47267 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.2664 0.4572 5 6 4.5475 -1.3717 0.4961 6 1 4.9794 -0.3896 0.6883 7 6 4.9574 -2.3362 1.6108 8 6 6.4827 -2.4484 1.6528 9 6 6.9925 -2.9751 0.3098 10 1 6.5610 -3.9573 0.1173 11 7 8.4529 -3.0831 0.3502 12 6 9.1040 -3.9775 -0.4817 13 7 10.4252 -4.0621 -0.4327 14 6 11.0781 -4.9067 -1.2137 15 6 10.3631 -5.7077 -2.0902 16 6 11.0723 -6.6775 -2.9999 17 8 11.9681 -5.9623 -3.8532 18 14 9.8194 -7.5867 -4.0362 19 6 8.9821 -5.5936 -2.1156 20 7 8.3911 -4.7287 -1.3080 21 6 6.5826 -2.0106 -0.8050 22 6 5.0573 -1.8984 -0.8470 23 1 -1.0498 -0.0003 0.0003 24 1 3.0090 0.7863 0.6628 25 1 3.0092 0.1821 -1.0115 26 1 4.5256 -3.3184 1.4186 27 1 4.5946 -1.9608 2.5677 28 1 6.7748 -3.1352 2.4473 29 1 6.9142 -1.4662 1.8453 30 1 8.9637 -2.5277 0.9598 31 1 12.1553 -4.9709 -1.1695 32 1 11.6352 -7.3930 -2.4002 33 1 12.4601 -6.5248 -4.4669 34 1 8.9019 -8.3602 -3.1614 35 1 9.0449 -6.6229 -4.8585 36 1 8.3956 -6.2030 -2.7873 37 1 7.0140 -1.0284 -0.6125 38 1 6.9453 -2.3860 -1.7619 39 1 4.6258 -2.8807 -1.0395 40 1 4.7652 -1.2110 -1.6409 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14940686_12175864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:54:32 Heat of formation + Delta-G solvation = 41.174369 kcal Electronic energy + Delta-G solvation = -22479.690392 eV Core-core repulsion = 19070.205454 eV Total energy + Delta-G solvation = -3409.484938 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.26105 -40.52996 -38.61915 -37.75085 -35.80252 -34.89586 -34.12146 -32.64969 -31.94494 -29.77420 -27.81131 -26.43279 -25.98851 -23.88165 -23.43214 -22.63365 -21.26564 -19.65407 -19.25400 -18.85366 -18.25353 -17.93155 -16.99478 -16.63683 -16.50669 -16.28163 -16.09499 -15.87881 -15.29201 -15.13792 -14.94369 -14.82105 -14.36148 -14.06418 -13.90804 -13.47292 -13.31782 -13.19769 -12.73833 -12.57044 -12.32189 -12.25193 -12.04406 -11.90943 -11.87160 -11.79698 -11.49343 -11.34053 -11.18262 -10.60552 -10.44819 -10.04212 -9.20747 -4.96398 -0.13134 -0.00136 1.30865 1.44483 1.64736 1.69524 1.75877 1.96316 2.63380 2.82411 2.94001 3.39890 3.45535 3.47829 3.52964 3.60770 3.67179 3.87141 3.96492 4.03814 4.09138 4.12080 4.18706 4.26192 4.31773 4.37411 4.42198 4.51980 4.55145 4.68279 4.72561 4.84576 4.96977 4.97893 5.04065 5.06390 5.09261 5.21475 5.29210 5.63646 5.89133 6.14564 6.29747 6.53992 6.95797 7.13560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.237 4.237 3 C 0.167 3.833 4 O -0.397 6.397 5 C 0.089 3.911 6 H 0.084 0.916 7 C -0.108 4.108 8 C -0.113 4.113 9 C 0.161 3.839 10 H 0.075 0.925 11 N -0.684 5.684 12 C 0.552 3.448 13 N -0.582 5.582 14 C 0.219 3.781 15 C -0.253 4.253 16 C -0.052 4.052 17 O -0.565 6.565 18 Si 0.769 3.231 19 C 0.174 3.826 20 N -0.579 5.579 21 C -0.117 4.117 22 C -0.133 4.133 23 H 0.249 0.751 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.421 0.579 31 H 0.195 0.805 32 H 0.104 0.896 33 H 0.406 0.594 34 H -0.287 1.287 35 H -0.298 1.298 36 H 0.159 0.841 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.148 -1.500 -0.891 3.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.237 4.237 3 C 0.092 3.908 4 O -0.318 6.318 5 C 0.032 3.968 6 H 0.102 0.898 7 C -0.147 4.147 8 C -0.151 4.151 9 C 0.056 3.944 10 H 0.093 0.907 11 N -0.321 5.321 12 C 0.196 3.804 13 N -0.304 5.304 14 C 0.051 3.949 15 C -0.261 4.261 16 C -0.164 4.164 17 O -0.375 6.375 18 Si 0.676 3.324 19 C 0.007 3.993 20 N -0.302 5.302 21 C -0.156 4.156 22 C -0.171 4.171 23 H 0.265 0.735 24 H 0.109 0.891 25 H 0.102 0.898 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.260 0.740 31 H 0.212 0.788 32 H 0.121 0.879 33 H 0.258 0.742 34 H -0.214 1.214 35 H -0.226 1.226 36 H 0.176 0.824 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.277 -0.575 -0.062 1.402 hybrid contribution 0.408 0.056 -0.197 0.456 sum 1.685 -0.519 -0.259 1.782 Atomic orbital electron populations 1.25860 0.96964 0.96579 0.99232 1.23229 0.95129 1.03294 1.02098 1.19308 0.84185 0.86572 1.00729 1.87963 1.22455 1.34155 1.87187 1.22285 0.79501 1.00076 0.94902 0.89764 1.21479 0.94738 0.99801 0.98640 1.21704 0.94813 1.03206 0.95410 1.21035 0.77516 0.99775 0.96066 0.90705 1.44293 1.06950 1.40227 1.40621 1.19635 0.85486 0.87673 0.87655 1.68037 1.08066 1.25718 1.28629 1.23275 1.01504 0.84951 0.85142 1.21072 0.94955 1.05778 1.04307 1.24382 1.00435 0.95727 0.95810 1.86429 1.58847 1.38665 1.53569 0.94203 0.77789 0.79966 0.80466 1.22820 0.92404 0.91514 0.92556 1.67894 1.40946 1.10829 1.10529 1.21796 0.95244 1.00032 0.98568 1.21936 0.94905 1.02222 0.98070 0.73492 0.89067 0.89790 0.91746 0.89726 0.89900 0.89174 0.74001 0.78817 0.87870 0.74234 1.21384 1.22628 0.82437 0.90514 0.93199 0.92108 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.56 19.25 74.32 1.43 0.87 16 2 C -0.24 -1.42 13.73 31.12 0.43 -0.99 16 3 C 0.17 0.34 6.22 70.17 0.44 0.77 16 4 O -0.40 -2.01 9.95 -148.98 -1.48 -3.49 16 5 C 0.09 -0.02 2.61 30.60 0.08 0.06 16 6 H 0.08 -0.33 7.79 -2.39 -0.02 -0.35 16 7 C -0.11 0.14 5.57 30.59 0.17 0.31 16 8 C -0.11 0.38 5.39 30.59 0.16 0.54 16 9 C 0.16 0.21 2.45 44.99 0.11 0.32 16 10 H 0.07 0.42 7.50 -2.39 -0.02 0.40 16 11 N -0.68 -2.27 5.22 -330.45 -1.73 -3.99 16 12 C 0.55 4.91 8.40 261.49 2.20 7.11 16 13 N -0.58 -4.99 10.46 -197.99 -2.07 -7.06 16 14 C 0.22 1.11 10.92 84.71 0.93 2.04 16 15 C -0.25 -1.16 5.43 -19.69 -0.11 -1.27 16 16 C -0.05 0.14 2.84 71.24 0.20 0.34 16 17 O -0.56 1.57 12.76 -148.98 -1.90 -0.33 16 18 Si 0.77 -2.57 29.87 68.60 2.05 -0.53 16 19 C 0.17 1.39 9.92 84.71 0.84 2.23 16 20 N -0.58 -6.04 9.20 -197.99 -1.82 -7.86 16 21 C -0.12 -0.16 5.51 30.60 0.17 0.01 16 22 C -0.13 -0.15 5.54 30.60 0.17 0.02 16 23 H 0.25 -1.10 7.80 -4.43 -0.03 -1.14 16 24 H 0.09 -0.20 8.08 -2.38 -0.02 -0.21 16 25 H 0.08 -0.08 7.87 -2.39 -0.02 -0.09 16 26 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.08 -0.18 8.14 -2.38 -0.02 -0.20 16 28 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 30 H 0.42 -0.04 8.72 -92.71 -0.81 -0.85 16 31 H 0.20 -0.13 8.06 -2.91 -0.02 -0.15 16 32 H 0.10 -0.80 7.96 -2.38 -0.02 -0.82 16 33 H 0.41 -5.40 8.74 -74.06 -0.65 -6.05 16 34 H -0.29 -0.62 7.11 99.48 0.71 0.08 16 35 H -0.30 -1.43 7.11 99.48 0.71 -0.73 16 36 H 0.16 0.94 5.04 -2.91 -0.01 0.93 16 37 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 38 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.07 0.03 7.87 -2.38 -0.02 0.01 16 Total: 0.00 -20.35 337.90 -0.10 -20.45 By element: Atomic # 1 Polarization: -9.19 SS G_CDS: -0.36 Total: -9.56 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 7.22 Total: 12.38 kcal Atomic # 7 Polarization: -13.30 SS G_CDS: -5.62 Total: -18.92 kcal Atomic # 8 Polarization: -0.44 SS G_CDS: -3.38 Total: -3.82 kcal Atomic # 14 Polarization: -2.57 SS G_CDS: 2.05 Total: -0.53 kcal Total: -20.35 -0.10 -20.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14940686_12175864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.622 kcal (2) G-P(sol) polarization free energy of solvation -20.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds