Wall clock time and date at job start Mon Mar 8 2021 08:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47269 * 59.62595 * 3 2 1 5 5 C 1.42900 * 113.99631 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47484 * 30.00713 * 5 4 3 7 7 C 1.53008 * 109.46960 * 150.00262 * 5 4 3 8 8 C 1.52997 * 109.47257 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47308 * 300.00381 * 8 7 5 10 10 H 1.09007 * 109.46649 * 299.99884 * 9 8 7 11 11 N 1.46497 * 109.47274 * 180.02562 * 9 8 7 12 12 C 1.38617 * 119.99827 * 154.99683 * 11 9 8 13 13 N 1.29677 * 124.95049 * 0.02562 * 12 11 9 14 14 C 1.32124 * 116.86660 * 179.97438 * 13 12 11 15 15 C 1.33325 * 114.57827 * 0.02562 * 14 13 12 16 16 C 1.50698 * 125.94967 * 180.02562 * 15 14 13 17 17 O 1.42895 * 109.47159 * 64.99960 * 16 15 14 18 18 Si 1.86307 * 109.46898 * 184.99747 * 16 15 14 19 19 S 1.70965 * 124.94540 * 179.97438 * 12 11 9 20 20 C 1.52998 * 109.47237 * 59.99493 * 9 8 7 21 21 C 1.52997 * 109.47437 * 270.00150 * 5 4 3 22 22 H 4.38444 * 5.44548 * 180.02562 * 4 1 2 23 23 H 1.09003 * 109.47058 * 299.62658 * 3 2 1 24 24 H 1.08998 * 109.47075 * 179.63199 * 3 2 1 25 25 H 1.09001 * 109.46654 * 59.99943 * 7 5 4 26 26 H 1.08997 * 109.47025 * 300.00328 * 7 5 4 27 27 H 1.08996 * 109.47177 * 179.97438 * 8 7 5 28 28 H 1.09007 * 109.47170 * 59.99946 * 8 7 5 29 29 H 0.96996 * 119.99757 * 334.99883 * 11 9 8 30 30 H 1.07999 * 122.70961 * 180.02562 * 14 13 12 31 31 H 1.08998 * 109.47426 * 304.99637 * 16 15 14 32 32 H 0.96704 * 113.99734 * 179.97438 * 17 16 15 33 33 H 1.48494 * 110.00016 * 299.99871 * 18 16 15 34 34 H 1.48495 * 110.00026 * 61.31893 * 18 16 15 35 35 H 1.08994 * 109.46877 * 60.00270 * 20 9 8 36 36 H 1.09008 * 109.46881 * 180.02562 * 20 9 8 37 37 H 1.09007 * 109.46919 * 300.00395 * 21 5 4 38 38 H 1.08996 * 109.47175 * 60.00072 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1226 -0.6804 -1.1623 5 6 4.5472 -0.7362 -1.2599 6 1 4.9799 -0.7450 -0.2594 7 6 4.9579 -2.0083 -2.0043 8 6 6.4831 -2.0679 -2.1093 9 6 6.9899 -0.8433 -2.8739 10 1 6.5569 -0.8348 -3.8742 11 7 8.4503 -0.9007 -2.9750 12 6 9.0997 -0.2450 -4.0093 13 7 8.5118 0.4451 -4.9365 14 6 9.2882 1.0052 -5.8471 15 6 10.5912 0.7768 -5.6811 16 6 11.6990 1.2899 -6.5646 17 8 11.7527 2.7154 -6.4818 18 14 13.3242 0.5734 -6.0022 19 16 10.7925 -0.2272 -4.2476 20 6 6.5792 0.4287 -2.1295 21 6 5.0545 0.4882 -2.0242 22 1 -1.0499 0.0000 -0.0003 23 1 3.0095 -0.5072 0.8933 24 1 3.0088 1.0284 -0.0066 25 1 4.5253 -1.9995 -3.0047 26 1 4.5965 -2.8806 -1.4598 27 1 6.7757 -2.9743 -2.6392 28 1 6.9162 -2.0764 -1.1090 29 1 8.9627 -1.3975 -2.3182 30 1 8.8988 1.5998 -6.6602 31 1 11.5084 0.9928 -7.5959 32 1 12.4448 3.1152 -7.0262 33 1 13.5957 0.9713 -4.5976 34 1 13.2923 -0.9070 -6.1137 35 1 7.0122 0.4201 -1.1293 36 1 6.9399 1.3011 -2.6746 37 1 4.6218 0.4970 -3.0247 38 1 4.7620 1.3945 -1.4939 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14940686_15704118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:54:39 Heat of formation + Delta-G solvation = 29.069321 kcal Electronic energy + Delta-G solvation = -20842.384957 eV Core-core repulsion = 17586.953261 eV Total energy + Delta-G solvation = -3255.431695 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.98273 -40.22792 -38.46598 -37.67071 -35.57045 -33.97247 -31.98612 -31.61057 -29.85233 -27.77775 -26.42970 -24.58094 -23.86099 -23.07930 -21.36490 -20.52070 -19.64687 -19.23288 -18.45070 -17.91716 -17.52028 -16.99703 -16.60277 -16.21915 -15.84540 -15.71138 -15.41186 -15.06585 -14.93643 -14.59647 -14.36262 -14.20546 -13.85356 -13.47093 -13.33290 -12.90486 -12.65925 -12.47241 -12.41808 -12.25390 -12.04984 -11.85696 -11.76927 -11.40615 -11.28412 -11.06446 -10.60045 -10.40932 -10.29317 -10.13520 -8.73589 -5.20759 -0.02517 0.11289 0.68213 1.23788 1.54168 1.58430 1.87282 1.93265 2.04508 2.10437 2.85468 3.45220 3.46405 3.51927 3.61227 3.68133 3.93956 3.99323 4.04000 4.07301 4.13688 4.23722 4.30429 4.34545 4.40252 4.41935 4.57725 4.69064 4.76574 4.83894 4.92640 4.98600 5.02830 5.06819 5.10829 5.19049 5.30671 5.84007 6.04322 6.14330 6.59768 6.63548 7.01536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.199 4.199 3 C 0.173 3.827 4 O -0.375 6.375 5 C 0.089 3.911 6 H 0.065 0.935 7 C -0.111 4.111 8 C -0.124 4.124 9 C 0.158 3.842 10 H 0.094 0.906 11 N -0.690 5.690 12 C 0.332 3.668 13 N -0.546 5.546 14 C 0.124 3.876 15 C -0.262 4.262 16 C -0.017 4.017 17 O -0.546 6.546 18 Si 0.667 3.333 19 S 0.066 5.934 20 C -0.126 4.126 21 C -0.138 4.138 22 H 0.223 0.777 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.413 0.587 30 H 0.178 0.822 31 H 0.082 0.918 32 H 0.383 0.617 33 H -0.239 1.239 34 H -0.243 1.243 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.125 -0.594 0.064 3.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.199 4.199 3 C 0.097 3.903 4 O -0.295 6.295 5 C 0.032 3.968 6 H 0.083 0.917 7 C -0.149 4.149 8 C -0.163 4.163 9 C 0.051 3.949 10 H 0.112 0.888 11 N -0.328 5.328 12 C -0.038 4.038 13 N -0.271 5.271 14 C -0.027 4.027 15 C -0.384 4.384 16 C -0.131 4.131 17 O -0.352 6.352 18 Si 0.567 3.433 19 S 0.315 5.685 20 C -0.166 4.166 21 C -0.177 4.177 22 H 0.239 0.761 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.250 0.750 30 H 0.195 0.805 31 H 0.100 0.900 32 H 0.230 0.770 33 H -0.163 1.163 34 H -0.167 1.167 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.019 -1.700 1.455 3.758 hybrid contribution -0.719 0.507 -0.226 0.908 sum 2.300 -1.193 1.229 2.868 Atomic orbital electron populations 1.25047 0.95977 0.99604 0.97962 1.22505 0.93891 1.01392 1.02134 1.19111 0.84844 0.97412 0.88886 1.87996 1.21238 1.77108 1.43121 1.22199 0.80360 0.95348 0.98915 0.91686 1.21494 0.94249 0.97044 1.02126 1.21788 0.95642 0.97831 1.01006 1.21123 0.78078 0.94704 1.00955 0.88756 1.44171 1.06706 1.55129 1.26820 1.23799 0.92568 0.94964 0.92468 1.66471 1.36974 1.17370 1.06280 1.21359 0.87750 0.96587 0.96997 1.24271 0.97799 1.13208 1.03093 1.23678 1.03868 0.85905 0.99615 1.86524 1.59568 1.17495 1.71625 0.95175 0.82028 0.81456 0.84625 1.84102 1.05785 1.52350 1.26295 1.21892 0.95233 0.98630 1.00815 1.21991 0.95195 0.98230 1.02261 0.76065 0.90799 0.90816 0.90390 0.90356 0.90308 0.91018 0.74989 0.80506 0.90025 0.76950 1.16262 1.16720 0.91719 0.90689 0.90463 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.27 19.25 29.55 0.57 0.30 16 2 C -0.20 -0.54 13.73 -37.12 -0.51 -1.05 16 3 C 0.17 0.14 6.22 34.37 0.21 0.35 16 4 O -0.37 -0.81 9.95 -35.23 -0.35 -1.16 16 5 C 0.09 -0.03 2.61 -26.73 -0.07 -0.10 16 6 H 0.07 -0.11 7.79 -51.93 -0.40 -0.51 16 7 C -0.11 0.11 5.57 -26.73 -0.15 -0.04 16 8 C -0.12 0.26 5.39 -26.73 -0.14 0.11 16 9 C 0.16 -0.05 2.58 -67.93 -0.18 -0.23 16 10 H 0.09 0.15 7.76 -51.93 -0.40 -0.26 16 11 N -0.69 -0.06 5.23 -55.78 -0.29 -0.36 16 12 C 0.33 0.91 8.06 -87.68 -0.71 0.20 16 13 N -0.55 -2.28 9.90 -15.21 -0.15 -2.43 16 14 C 0.12 0.42 11.24 -19.14 -0.22 0.21 16 15 C -0.26 -0.77 5.76 -36.02 -0.21 -0.98 16 16 C -0.02 0.00 2.98 36.00 0.11 0.10 16 17 O -0.55 -0.22 12.86 -35.23 -0.45 -0.67 16 18 Si 0.67 -0.39 31.07 -169.99 -5.28 -5.67 16 19 S 0.07 0.17 20.59 -107.50 -2.21 -2.04 16 20 C -0.13 0.02 5.51 -26.76 -0.15 -0.13 16 21 C -0.14 0.02 5.53 -26.76 -0.15 -0.13 16 22 H 0.22 -0.42 7.80 -54.09 -0.42 -0.85 16 23 H 0.07 -0.07 8.09 -51.93 -0.42 -0.49 16 24 H 0.07 -0.05 7.87 -51.93 -0.41 -0.46 16 25 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 26 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 27 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 28 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 29 H 0.41 -0.85 8.73 -40.82 -0.36 -1.20 16 30 H 0.18 0.30 8.06 -52.49 -0.42 -0.13 16 31 H 0.08 -0.14 7.96 -51.93 -0.41 -0.55 16 32 H 0.38 -1.84 8.74 45.56 0.40 -1.44 16 33 H -0.24 -0.62 7.11 56.52 0.40 -0.22 16 34 H -0.24 -0.43 7.11 56.52 0.40 -0.03 16 35 H 0.06 -0.05 8.14 -51.93 -0.42 -0.48 16 36 H 0.07 0.15 8.14 -51.92 -0.42 -0.28 16 37 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 38 H 0.07 -0.02 7.87 -51.93 -0.41 -0.43 16 LS Contribution 335.90 15.07 5.06 5.06 Total: 0.00 -7.80 335.90 -10.68 -18.48 By element: Atomic # 1 Polarization: -4.43 SS G_CDS: -5.42 Total: -9.84 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -1.58 Total: -1.37 kcal Atomic # 7 Polarization: -2.35 SS G_CDS: -0.44 Total: -2.79 kcal Atomic # 8 Polarization: -1.02 SS G_CDS: -0.80 Total: -1.82 kcal Atomic # 14 Polarization: -0.39 SS G_CDS: -5.28 Total: -5.67 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -2.21 Total: -2.04 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -7.80 -10.68 -18.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14940686_15704118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.545 kcal (2) G-P(sol) polarization free energy of solvation -7.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds