Wall clock time and date at job start Mon Mar 8 2021 08:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47269 * 59.62595 * 3 2 1 5 5 C 1.42900 * 113.99631 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47484 * 30.00713 * 5 4 3 7 7 C 1.53008 * 109.46960 * 150.00262 * 5 4 3 8 8 C 1.52997 * 109.47257 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47308 * 300.00381 * 8 7 5 10 10 H 1.09007 * 109.46649 * 299.99884 * 9 8 7 11 11 N 1.46497 * 109.47274 * 180.02562 * 9 8 7 12 12 C 1.38617 * 119.99827 * 154.99683 * 11 9 8 13 13 N 1.29677 * 124.95049 * 0.02562 * 12 11 9 14 14 C 1.32124 * 116.86660 * 179.97438 * 13 12 11 15 15 C 1.33325 * 114.57827 * 0.02562 * 14 13 12 16 16 C 1.50698 * 125.94967 * 180.02562 * 15 14 13 17 17 O 1.42895 * 109.47159 * 64.99960 * 16 15 14 18 18 Si 1.86307 * 109.46898 * 184.99747 * 16 15 14 19 19 S 1.70965 * 124.94540 * 179.97438 * 12 11 9 20 20 C 1.52998 * 109.47237 * 59.99493 * 9 8 7 21 21 C 1.52997 * 109.47437 * 270.00150 * 5 4 3 22 22 H 4.38444 * 5.44548 * 180.02562 * 4 1 2 23 23 H 1.09003 * 109.47058 * 299.62658 * 3 2 1 24 24 H 1.08998 * 109.47075 * 179.63199 * 3 2 1 25 25 H 1.09001 * 109.46654 * 59.99943 * 7 5 4 26 26 H 1.08997 * 109.47025 * 300.00328 * 7 5 4 27 27 H 1.08996 * 109.47177 * 179.97438 * 8 7 5 28 28 H 1.09007 * 109.47170 * 59.99946 * 8 7 5 29 29 H 0.96996 * 119.99757 * 334.99883 * 11 9 8 30 30 H 1.07999 * 122.70961 * 180.02562 * 14 13 12 31 31 H 1.08998 * 109.47426 * 304.99637 * 16 15 14 32 32 H 0.96704 * 113.99734 * 179.97438 * 17 16 15 33 33 H 1.48494 * 110.00016 * 299.99871 * 18 16 15 34 34 H 1.48495 * 110.00026 * 61.31893 * 18 16 15 35 35 H 1.08994 * 109.46877 * 60.00270 * 20 9 8 36 36 H 1.09008 * 109.46881 * 180.02562 * 20 9 8 37 37 H 1.09007 * 109.46919 * 300.00395 * 21 5 4 38 38 H 1.08996 * 109.47175 * 60.00072 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1226 -0.6804 -1.1623 5 6 4.5472 -0.7362 -1.2599 6 1 4.9799 -0.7450 -0.2594 7 6 4.9579 -2.0083 -2.0043 8 6 6.4831 -2.0679 -2.1093 9 6 6.9899 -0.8433 -2.8739 10 1 6.5569 -0.8348 -3.8742 11 7 8.4503 -0.9007 -2.9750 12 6 9.0997 -0.2450 -4.0093 13 7 8.5118 0.4451 -4.9365 14 6 9.2882 1.0052 -5.8471 15 6 10.5912 0.7768 -5.6811 16 6 11.6990 1.2899 -6.5646 17 8 11.7527 2.7154 -6.4818 18 14 13.3242 0.5734 -6.0022 19 16 10.7925 -0.2272 -4.2476 20 6 6.5792 0.4287 -2.1295 21 6 5.0545 0.4882 -2.0242 22 1 -1.0499 0.0000 -0.0003 23 1 3.0095 -0.5072 0.8933 24 1 3.0088 1.0284 -0.0066 25 1 4.5253 -1.9995 -3.0047 26 1 4.5965 -2.8806 -1.4598 27 1 6.7757 -2.9743 -2.6392 28 1 6.9162 -2.0764 -1.1090 29 1 8.9627 -1.3975 -2.3182 30 1 8.8988 1.5998 -6.6602 31 1 11.5084 0.9928 -7.5959 32 1 12.4448 3.1152 -7.0262 33 1 13.5957 0.9713 -4.5976 34 1 13.2923 -0.9070 -6.1137 35 1 7.0122 0.4201 -1.1293 36 1 6.9399 1.3011 -2.6746 37 1 4.6218 0.4970 -3.0247 38 1 4.7620 1.3945 -1.4939 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14940686_15704118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:54:38 Heat of formation + Delta-G solvation = 30.763515 kcal Electronic energy + Delta-G solvation = -20842.311491 eV Core-core repulsion = 17586.953261 eV Total energy + Delta-G solvation = -3255.358230 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.08121 -40.29623 -38.50536 -37.66827 -35.62307 -34.04855 -31.96465 -31.69866 -29.88164 -27.81381 -26.53037 -24.68687 -23.82289 -23.11541 -21.36060 -20.65209 -19.73663 -19.28291 -18.42892 -17.92930 -17.63417 -17.01655 -16.62768 -16.24107 -15.95530 -15.82253 -15.46034 -15.07338 -14.96213 -14.69997 -14.38995 -14.26593 -13.86692 -13.47143 -13.30113 -12.96719 -12.70737 -12.54192 -12.47960 -12.23037 -12.15838 -11.88459 -11.80024 -11.47390 -11.32607 -11.11717 -10.76440 -10.44674 -10.39723 -10.23503 -8.86307 -5.18852 -0.19677 -0.05051 0.50931 1.23775 1.46234 1.57097 1.76707 1.85472 1.92141 2.04610 2.84418 3.46067 3.50493 3.54819 3.58960 3.67720 3.96156 3.98687 4.05038 4.11800 4.18858 4.26527 4.32662 4.39090 4.43171 4.46824 4.57729 4.62502 4.74253 4.84250 4.96148 4.98560 5.01484 5.06039 5.08995 5.20845 5.29061 5.73604 6.04999 6.15994 6.54810 6.85988 6.92613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.237 4.237 3 C 0.167 3.833 4 O -0.398 6.398 5 C 0.089 3.911 6 H 0.085 0.915 7 C -0.109 4.109 8 C -0.114 4.114 9 C 0.161 3.839 10 H 0.072 0.928 11 N -0.679 5.679 12 C 0.329 3.671 13 N -0.571 5.571 14 C 0.109 3.891 15 C -0.274 4.274 16 C -0.024 4.024 17 O -0.564 6.564 18 Si 0.757 3.243 19 S 0.053 5.947 20 C -0.118 4.118 21 C -0.133 4.133 22 H 0.249 0.751 23 H 0.092 0.908 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.424 0.576 30 H 0.188 0.812 31 H 0.106 0.894 32 H 0.405 0.595 33 H -0.284 1.284 34 H -0.275 1.275 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.535 -0.838 0.446 3.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.237 4.237 3 C 0.092 3.908 4 O -0.318 6.318 5 C 0.032 3.968 6 H 0.103 0.897 7 C -0.147 4.147 8 C -0.152 4.152 9 C 0.054 3.946 10 H 0.090 0.910 11 N -0.319 5.319 12 C -0.042 4.042 13 N -0.297 5.297 14 C -0.041 4.041 15 C -0.396 4.396 16 C -0.137 4.137 17 O -0.374 6.374 18 Si 0.661 3.339 19 S 0.302 5.698 20 C -0.157 4.157 21 C -0.172 4.172 22 H 0.265 0.735 23 H 0.109 0.891 24 H 0.102 0.898 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.263 0.737 30 H 0.205 0.795 31 H 0.123 0.877 32 H 0.256 0.744 33 H -0.211 1.211 34 H -0.201 1.201 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.436 -1.932 1.819 4.342 hybrid contribution -0.873 0.600 -0.325 1.108 sum 2.563 -1.332 1.494 3.252 Atomic orbital electron populations 1.25859 0.96973 0.98778 0.97073 1.23236 0.95145 1.02294 1.03061 1.19308 0.84161 0.98190 0.89113 1.87965 1.22518 1.77387 1.43945 1.22294 0.79493 0.95141 0.99857 0.89716 1.21483 0.94859 0.97048 1.01336 1.21716 0.94780 0.96880 1.01800 1.21085 0.77702 0.95647 1.00134 0.90973 1.44241 1.06929 1.54421 1.26287 1.23981 0.92667 0.94817 0.92688 1.66480 1.37789 1.18357 1.07109 1.21591 0.88118 0.96982 0.97374 1.24654 0.98540 1.13142 1.03258 1.23863 1.03313 0.86117 1.00436 1.86470 1.60959 1.17403 1.72601 0.94200 0.80040 0.78294 0.81386 1.84094 1.06055 1.52801 1.26883 1.21790 0.95137 0.97679 1.01110 1.21926 0.95064 0.98780 1.01409 0.73517 0.89058 0.89779 0.91836 0.89758 0.89748 0.89021 0.73652 0.79536 0.87654 0.74375 1.21080 1.20143 0.90323 0.93020 0.92246 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.54 19.25 74.32 1.43 0.90 16 2 C -0.24 -1.37 13.73 31.13 0.43 -0.94 16 3 C 0.17 0.28 6.22 70.18 0.44 0.72 16 4 O -0.40 -1.87 9.95 -148.98 -1.48 -3.35 16 5 C 0.09 -0.07 2.61 30.60 0.08 0.01 16 6 H 0.08 -0.40 7.79 -2.39 -0.02 -0.42 16 7 C -0.11 0.22 5.57 30.60 0.17 0.39 16 8 C -0.11 0.55 5.39 30.59 0.16 0.71 16 9 C 0.16 -0.02 2.58 44.99 0.12 0.09 16 10 H 0.07 0.35 7.76 -2.38 -0.02 0.33 16 11 N -0.68 -0.37 5.23 -330.40 -1.73 -2.10 16 12 C 0.33 2.13 8.06 179.32 1.45 3.57 16 13 N -0.57 -5.60 9.90 -202.03 -2.00 -7.60 16 14 C 0.11 0.87 11.24 83.54 0.94 1.80 16 15 C -0.27 -1.78 5.76 24.57 0.14 -1.64 16 16 C -0.02 0.00 2.98 71.24 0.21 0.21 16 17 O -0.56 -0.12 12.86 -148.98 -1.92 -2.04 16 18 Si 0.76 -0.88 31.07 68.60 2.13 1.25 16 19 S 0.05 0.33 20.59 -56.49 -1.16 -0.83 16 20 C -0.12 -0.03 5.51 30.58 0.17 0.14 16 21 C -0.13 -0.07 5.53 30.58 0.17 0.10 16 22 H 0.25 -1.12 7.80 -4.42 -0.03 -1.16 16 23 H 0.09 -0.23 8.09 -2.39 -0.02 -0.25 16 24 H 0.08 -0.10 7.87 -2.39 -0.02 -0.12 16 25 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 26 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 28 H 0.09 -0.75 8.14 -2.38 -0.02 -0.77 16 29 H 0.42 -1.88 8.73 -92.71 -0.81 -2.69 16 30 H 0.19 0.81 8.06 -2.91 -0.02 0.79 16 31 H 0.11 -0.48 7.96 -2.39 -0.02 -0.50 16 32 H 0.40 -4.37 8.74 -74.05 -0.65 -5.02 16 33 H -0.28 -1.79 7.11 99.48 0.71 -1.08 16 34 H -0.28 -1.11 7.11 99.48 0.71 -0.40 16 35 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.05 0.28 8.14 -2.38 -0.02 0.26 16 37 H 0.06 0.24 8.14 -2.38 -0.02 0.22 16 38 H 0.07 0.00 7.87 -2.39 -0.02 -0.02 16 Total: 0.00 -19.72 335.90 -0.61 -20.32 By element: Atomic # 1 Polarization: -11.37 SS G_CDS: -0.35 Total: -11.72 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 5.90 Total: 6.05 kcal Atomic # 7 Polarization: -5.96 SS G_CDS: -3.73 Total: -9.69 kcal Atomic # 8 Polarization: -1.99 SS G_CDS: -3.40 Total: -5.39 kcal Atomic # 14 Polarization: -0.88 SS G_CDS: 2.13 Total: 1.25 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -1.16 Total: -0.83 kcal Total: -19.72 -0.61 -20.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14940686_15704118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.087 kcal (2) G-P(sol) polarization free energy of solvation -19.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds