Wall clock time and date at job start Mon Mar 8 2021 08:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47355 * 358.64356 * 3 2 1 5 5 C 1.42898 * 114.00071 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47282 * 330.00462 * 5 4 3 7 7 C 1.53002 * 109.46909 * 90.00269 * 5 4 3 8 8 C 1.53000 * 109.46897 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47089 * 299.99649 * 8 7 5 10 10 H 1.08997 * 109.47305 * 300.00537 * 9 8 7 11 11 N 1.46496 * 109.47370 * 180.02562 * 9 8 7 12 12 C 1.38600 * 120.00023 * 84.99987 * 11 9 8 13 13 N 1.29689 * 124.95248 * 180.28077 * 12 11 9 14 14 C 1.32121 * 116.86662 * 180.23207 * 13 12 11 15 15 C 1.50698 * 122.70773 * 179.75675 * 14 13 12 16 16 O 1.42905 * 109.47321 * 149.70478 * 15 14 13 17 17 Si 1.86295 * 109.47516 * 29.70368 * 15 14 13 18 18 C 1.33326 * 114.58243 * 359.47711 * 14 13 12 19 19 C 1.50693 * 125.95676 * 180.24943 * 18 14 13 20 20 S 1.70971 * 124.95069 * 359.97438 * 12 11 9 21 21 C 1.53004 * 109.46923 * 60.00001 * 9 8 7 22 22 C 1.52995 * 109.47305 * 300.00429 * 21 9 8 23 23 H 4.38453 * 5.44415 * 180.02562 * 4 1 2 24 24 H 1.09001 * 109.46780 * 238.64717 * 3 2 1 25 25 H 1.08998 * 109.47342 * 118.65070 * 3 2 1 26 26 H 1.08997 * 109.47206 * 299.99977 * 7 5 4 27 27 H 1.08997 * 109.46991 * 60.00015 * 7 5 4 28 28 H 1.09003 * 109.46985 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47329 * 59.99580 * 8 7 5 30 30 H 0.97000 * 119.99874 * 265.00659 * 11 9 8 31 31 H 1.09001 * 109.47122 * 269.70578 * 15 14 13 32 32 H 0.96696 * 114.00036 * 299.99741 * 16 15 14 33 33 H 1.48504 * 110.00018 * 58.68178 * 17 15 14 34 34 H 1.48496 * 110.00262 * 180.02562 * 17 15 14 35 35 H 1.09002 * 109.47032 * 90.00095 * 19 18 14 36 36 H 1.08996 * 109.47776 * 210.00410 * 19 18 14 37 37 H 1.09007 * 109.47077 * 330.00696 * 19 18 14 38 38 H 1.09007 * 109.47136 * 59.99826 * 21 9 8 39 39 H 1.08997 * 109.47164 * 179.97438 * 21 9 8 40 40 H 1.09003 * 109.47052 * 179.97438 * 22 21 9 41 41 H 1.08997 * 109.47027 * 299.99527 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 -1.3460 0.0319 5 6 4.5476 -1.4581 0.0351 6 1 4.9799 -0.6117 -0.4985 7 6 5.0553 -1.4643 1.4785 8 6 6.5807 -1.5837 1.4819 9 6 6.9919 -2.8855 0.7911 10 1 6.5599 -3.7321 1.3246 11 7 8.4524 -3.0001 0.7949 12 6 9.1026 -3.5347 1.8960 13 7 10.3873 -3.6758 2.0040 14 6 10.8371 -4.2101 3.1256 15 6 12.3033 -4.4392 3.3877 16 8 12.5580 -4.3378 4.7902 17 14 13.3043 -3.1565 2.4804 18 6 9.8894 -4.5246 4.0091 19 6 10.1142 -5.1393 5.3665 20 16 8.3287 -4.0972 3.3129 21 6 6.4841 -2.8794 -0.6522 22 6 4.9588 -2.7598 -0.6557 23 1 -1.0498 -0.0004 -0.0002 24 1 3.0090 0.5355 0.8776 25 1 3.0091 0.4935 -0.9018 26 1 4.7627 -0.5367 1.9705 27 1 4.6230 -2.3107 2.0121 28 1 6.9424 -1.5885 2.5102 29 1 7.0126 -0.7370 0.9483 30 1 8.9643 -2.7019 0.0269 31 1 12.5839 -5.4329 3.0384 32 1 12.3313 -3.4779 5.1699 33 1 12.9087 -1.7958 2.9247 34 1 14.7522 -3.3720 2.7303 35 1 10.2417 -4.3492 6.1065 36 1 9.2541 -5.7528 5.6346 37 1 11.0095 -5.7605 5.3404 38 1 6.9160 -2.0326 -1.1858 39 1 6.7774 -3.8065 -1.1445 40 1 4.5971 -2.7550 -1.6839 41 1 4.5268 -3.6065 -0.1222 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14940686_15704122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:54:42 Heat of formation + Delta-G solvation = 22.348430 kcal Electronic energy + Delta-G solvation = -22902.927445 eV Core-core repulsion = 19491.666691 eV Total energy + Delta-G solvation = -3411.260754 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.119 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.11841 -40.59632 -38.71660 -37.67182 -35.62246 -34.04567 -32.69571 -32.11076 -30.22339 -28.84250 -27.65733 -25.58528 -24.57830 -23.85693 -23.10537 -21.58056 -20.43091 -19.38549 -19.11110 -18.05445 -17.95218 -17.34681 -16.90143 -16.73568 -16.51413 -16.18116 -15.65436 -15.55889 -15.17600 -15.00870 -14.50279 -14.15929 -14.13513 -13.78971 -13.70623 -13.63699 -13.46676 -13.28597 -12.96896 -12.62843 -12.52543 -12.39466 -12.27408 -12.01750 -11.83627 -11.76763 -11.43430 -11.36519 -11.01598 -10.57770 -10.51081 -10.41705 -9.98076 -8.61069 -4.65588 0.04880 0.20020 0.81563 1.40591 1.48467 1.82887 1.83543 1.85564 1.98050 2.13606 2.78784 3.29837 3.33668 3.38572 3.52041 3.56861 3.79475 3.86531 3.94538 3.99084 4.12237 4.15778 4.19774 4.22536 4.33022 4.37220 4.45724 4.53039 4.59841 4.67150 4.77413 4.82630 4.88694 4.90474 4.93247 4.94510 5.03739 5.10348 5.15690 5.32152 5.59201 6.06626 6.25807 6.40128 6.59276 6.97200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.200 4.200 3 C 0.173 3.827 4 O -0.375 6.375 5 C 0.089 3.911 6 H 0.067 0.933 7 C -0.140 4.140 8 C -0.135 4.135 9 C 0.150 3.850 10 H 0.085 0.915 11 N -0.690 5.690 12 C 0.322 3.678 13 N -0.539 5.539 14 C 0.069 3.931 15 C -0.042 4.042 16 O -0.526 6.526 17 Si 0.721 3.279 18 C -0.243 4.243 19 C -0.066 4.066 20 S 0.099 5.901 21 C -0.121 4.121 22 C -0.113 4.113 23 H 0.223 0.777 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.413 0.587 31 H 0.124 0.876 32 H 0.375 0.625 33 H -0.268 1.268 34 H -0.261 1.261 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.499 1.636 -2.203 3.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.200 4.200 3 C 0.098 3.902 4 O -0.294 6.294 5 C 0.031 3.969 6 H 0.085 0.915 7 C -0.178 4.178 8 C -0.174 4.174 9 C 0.044 3.956 10 H 0.103 0.897 11 N -0.330 5.330 12 C -0.049 4.049 13 N -0.266 5.266 14 C -0.062 4.062 15 C -0.155 4.155 16 O -0.331 6.331 17 Si 0.622 3.378 18 C -0.366 4.366 19 C -0.125 4.125 20 S 0.348 5.652 21 C -0.159 4.159 22 C -0.151 4.151 23 H 0.239 0.761 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.251 0.749 31 H 0.142 0.858 32 H 0.223 0.777 33 H -0.193 1.193 34 H -0.187 1.187 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.743 1.641 -2.316 3.948 hybrid contribution 0.461 0.573 0.881 1.148 sum -2.282 2.214 -1.435 3.488 Atomic orbital electron populations 1.25057 0.95990 0.97070 1.00337 1.22492 0.93882 1.02574 1.01091 1.19114 0.84859 0.84760 1.01490 1.87999 1.21112 1.25172 1.95131 1.22191 0.80495 0.98641 0.95570 0.91505 1.22021 0.94797 1.03662 0.97367 1.22029 0.95657 0.97852 1.01852 1.21221 0.77971 0.98454 0.97921 0.89735 1.44024 1.05758 1.67300 1.15963 1.23276 0.90881 0.97307 0.93473 1.65734 1.10413 1.25535 1.24919 1.20086 0.97677 0.99395 0.88997 1.24464 0.92731 1.11320 0.86969 1.86606 1.87259 1.38846 1.20427 0.93632 0.76503 0.76153 0.91508 1.25131 0.92803 1.14475 1.04171 1.20204 1.02805 1.00103 0.89397 1.84024 1.10318 1.61303 1.09576 1.21733 0.95518 1.03898 0.94746 1.21518 0.94181 0.97340 1.02041 0.76067 0.90811 0.90733 0.90966 0.90451 0.90908 0.90808 0.74862 0.85817 0.77668 1.19288 1.18672 0.91339 0.92151 0.89014 0.90535 0.89912 0.90110 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.14 19.25 29.55 0.57 0.43 16 2 C -0.20 -0.36 13.73 -37.12 -0.51 -0.87 16 3 C 0.17 -0.05 6.22 34.37 0.21 0.16 16 4 O -0.37 -0.31 9.95 -35.23 -0.35 -0.66 16 5 C 0.09 -0.17 2.61 -26.73 -0.07 -0.24 16 6 H 0.07 -0.21 7.79 -51.93 -0.40 -0.61 16 7 C -0.14 0.31 5.54 -26.73 -0.15 0.16 16 8 C -0.13 0.33 5.51 -26.73 -0.15 0.18 16 9 C 0.15 -0.37 2.40 -67.93 -0.16 -0.54 16 10 H 0.08 -0.16 7.25 -51.93 -0.38 -0.53 16 11 N -0.69 0.84 5.23 -55.78 -0.29 0.55 16 12 C 0.32 0.42 8.22 -87.69 -0.72 -0.30 16 13 N -0.54 -1.39 8.94 -11.36 -0.10 -1.50 16 14 C 0.07 0.16 5.92 -84.18 -0.50 -0.34 16 15 C -0.04 -0.05 2.82 36.00 0.10 0.05 16 16 O -0.53 -0.64 9.90 -35.23 -0.35 -0.98 16 17 Si 0.72 0.94 32.08 -169.99 -5.45 -4.51 16 18 C -0.24 -0.46 6.50 -36.03 -0.23 -0.70 16 19 C -0.07 -0.03 8.95 36.00 0.32 0.29 16 20 S 0.10 0.09 21.68 -107.50 -2.33 -2.24 16 21 C -0.12 0.44 5.39 -26.73 -0.14 0.30 16 22 C -0.11 0.29 5.57 -26.74 -0.15 0.14 16 23 H 0.22 -0.57 7.80 -54.10 -0.42 -0.99 16 24 H 0.07 -0.14 7.87 -51.93 -0.41 -0.54 16 25 H 0.07 -0.15 8.09 -51.93 -0.42 -0.57 16 26 H 0.07 -0.16 7.87 -51.93 -0.41 -0.57 16 27 H 0.08 -0.11 8.14 -51.93 -0.42 -0.54 16 28 H 0.07 -0.10 8.04 -51.93 -0.42 -0.52 16 29 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 30 H 0.41 -0.92 8.73 -40.82 -0.36 -1.28 16 31 H 0.12 0.07 7.96 -51.93 -0.41 -0.35 16 32 H 0.38 -0.41 8.68 45.56 0.40 -0.01 16 33 H -0.27 -1.09 7.11 56.52 0.40 -0.69 16 34 H -0.26 -0.94 7.11 56.52 0.40 -0.54 16 35 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 36 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 37 H 0.09 0.09 6.62 -51.92 -0.34 -0.26 16 38 H 0.08 -0.33 8.14 -51.93 -0.42 -0.76 16 39 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 40 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 41 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 LS Contribution 352.45 15.07 5.31 5.31 Total: 0.00 -6.16 352.45 -11.30 -17.46 By element: Atomic # 1 Polarization: -6.01 SS G_CDS: -6.15 Total: -12.17 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.58 Total: -1.27 kcal Atomic # 7 Polarization: -0.55 SS G_CDS: -0.39 Total: -0.94 kcal Atomic # 8 Polarization: -0.94 SS G_CDS: -0.70 Total: -1.64 kcal Atomic # 14 Polarization: 0.94 SS G_CDS: -5.45 Total: -4.51 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.33 Total: -2.24 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -6.16 -11.30 -17.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14940686_15704122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.808 kcal (2) G-P(sol) polarization free energy of solvation -6.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds