Wall clock time and date at job start Mon Mar 8 2021 08:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47355 * 358.64356 * 3 2 1 5 5 C 1.42898 * 114.00071 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47282 * 330.00462 * 5 4 3 7 7 C 1.53002 * 109.46909 * 90.00269 * 5 4 3 8 8 C 1.53000 * 109.46897 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47089 * 299.99649 * 8 7 5 10 10 H 1.08997 * 109.47305 * 300.00537 * 9 8 7 11 11 N 1.46496 * 109.47370 * 180.02562 * 9 8 7 12 12 C 1.38600 * 120.00023 * 84.99987 * 11 9 8 13 13 N 1.29689 * 124.95248 * 180.28077 * 12 11 9 14 14 C 1.32121 * 116.86662 * 180.23207 * 13 12 11 15 15 C 1.50698 * 122.70773 * 179.75675 * 14 13 12 16 16 O 1.42905 * 109.47321 * 149.70478 * 15 14 13 17 17 Si 1.86295 * 109.47516 * 29.70368 * 15 14 13 18 18 C 1.33326 * 114.58243 * 359.47711 * 14 13 12 19 19 C 1.50693 * 125.95676 * 180.24943 * 18 14 13 20 20 S 1.70971 * 124.95069 * 359.97438 * 12 11 9 21 21 C 1.53004 * 109.46923 * 60.00001 * 9 8 7 22 22 C 1.52995 * 109.47305 * 300.00429 * 21 9 8 23 23 H 4.38453 * 5.44415 * 180.02562 * 4 1 2 24 24 H 1.09001 * 109.46780 * 238.64717 * 3 2 1 25 25 H 1.08998 * 109.47342 * 118.65070 * 3 2 1 26 26 H 1.08997 * 109.47206 * 299.99977 * 7 5 4 27 27 H 1.08997 * 109.46991 * 60.00015 * 7 5 4 28 28 H 1.09003 * 109.46985 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47329 * 59.99580 * 8 7 5 30 30 H 0.97000 * 119.99874 * 265.00659 * 11 9 8 31 31 H 1.09001 * 109.47122 * 269.70578 * 15 14 13 32 32 H 0.96696 * 114.00036 * 299.99741 * 16 15 14 33 33 H 1.48504 * 110.00018 * 58.68178 * 17 15 14 34 34 H 1.48496 * 110.00262 * 180.02562 * 17 15 14 35 35 H 1.09002 * 109.47032 * 90.00095 * 19 18 14 36 36 H 1.08996 * 109.47776 * 210.00410 * 19 18 14 37 37 H 1.09007 * 109.47077 * 330.00696 * 19 18 14 38 38 H 1.09007 * 109.47136 * 59.99826 * 21 9 8 39 39 H 1.08997 * 109.47164 * 179.97438 * 21 9 8 40 40 H 1.09003 * 109.47052 * 179.97438 * 22 21 9 41 41 H 1.08997 * 109.47027 * 299.99527 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 -1.3460 0.0319 5 6 4.5476 -1.4581 0.0351 6 1 4.9799 -0.6117 -0.4985 7 6 5.0553 -1.4643 1.4785 8 6 6.5807 -1.5837 1.4819 9 6 6.9919 -2.8855 0.7911 10 1 6.5599 -3.7321 1.3246 11 7 8.4524 -3.0001 0.7949 12 6 9.1026 -3.5347 1.8960 13 7 10.3873 -3.6758 2.0040 14 6 10.8371 -4.2101 3.1256 15 6 12.3033 -4.4392 3.3877 16 8 12.5580 -4.3378 4.7902 17 14 13.3043 -3.1565 2.4804 18 6 9.8894 -4.5246 4.0091 19 6 10.1142 -5.1393 5.3665 20 16 8.3287 -4.0972 3.3129 21 6 6.4841 -2.8794 -0.6522 22 6 4.9588 -2.7598 -0.6557 23 1 -1.0498 -0.0004 -0.0002 24 1 3.0090 0.5355 0.8776 25 1 3.0091 0.4935 -0.9018 26 1 4.7627 -0.5367 1.9705 27 1 4.6230 -2.3107 2.0121 28 1 6.9424 -1.5885 2.5102 29 1 7.0126 -0.7370 0.9483 30 1 8.9643 -2.7019 0.0269 31 1 12.5839 -5.4329 3.0384 32 1 12.3313 -3.4779 5.1699 33 1 12.9087 -1.7958 2.9247 34 1 14.7522 -3.3720 2.7303 35 1 10.2417 -4.3492 6.1065 36 1 9.2541 -5.7528 5.6346 37 1 11.0095 -5.7605 5.3404 38 1 6.9160 -2.0326 -1.1858 39 1 6.7774 -3.8065 -1.1445 40 1 4.5971 -2.7550 -1.6839 41 1 4.5268 -3.6065 -0.1222 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14940686_15704122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:54:41 Heat of formation + Delta-G solvation = 27.356198 kcal Electronic energy + Delta-G solvation = -22902.710292 eV Core-core repulsion = 19491.666691 eV Total energy + Delta-G solvation = -3411.043601 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.119 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.14773 -40.50013 -38.66126 -37.71512 -35.57204 -34.04352 -32.71991 -31.91416 -30.17250 -28.84844 -27.59454 -25.64380 -24.56534 -23.69739 -22.98507 -21.46250 -20.42422 -19.33897 -19.14449 -18.08868 -17.88157 -17.33682 -16.83855 -16.73137 -16.47468 -16.09431 -15.75600 -15.52709 -15.03831 -14.95638 -14.35931 -14.30042 -14.10035 -13.80879 -13.70068 -13.54167 -13.33788 -13.25404 -12.94461 -12.58020 -12.51462 -12.33857 -12.18873 -12.00550 -11.86570 -11.74568 -11.37632 -11.30278 -10.98780 -10.67047 -10.52678 -10.37611 -10.05454 -8.63436 -4.78748 -0.02992 0.14878 0.73885 1.29444 1.48758 1.67054 1.79171 1.82261 1.90532 1.99489 2.87423 3.28242 3.47655 3.51723 3.56296 3.68195 3.97662 4.03000 4.13222 4.14192 4.19103 4.28017 4.32142 4.33727 4.43383 4.45747 4.54030 4.61385 4.72466 4.77220 4.84704 4.90228 5.01290 5.03145 5.07087 5.10576 5.12025 5.23670 5.28958 5.31072 5.65084 6.19686 6.31145 6.44364 6.57322 6.91746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.236 4.236 3 C 0.168 3.832 4 O -0.397 6.397 5 C 0.086 3.914 6 H 0.082 0.918 7 C -0.135 4.135 8 C -0.128 4.128 9 C 0.150 3.850 10 H 0.078 0.922 11 N -0.681 5.681 12 C 0.316 3.684 13 N -0.558 5.558 14 C 0.058 3.942 15 C -0.042 4.042 16 O -0.533 6.533 17 Si 0.783 3.217 18 C -0.258 4.258 19 C -0.062 4.062 20 S 0.108 5.892 21 C -0.112 4.112 22 C -0.110 4.110 23 H 0.247 0.753 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.419 0.581 31 H 0.132 0.868 32 H 0.384 0.616 33 H -0.305 1.305 34 H -0.292 1.292 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.827 1.812 -2.738 4.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.236 4.236 3 C 0.093 3.907 4 O -0.318 6.318 5 C 0.029 3.971 6 H 0.100 0.900 7 C -0.174 4.174 8 C -0.167 4.167 9 C 0.045 3.955 10 H 0.096 0.904 11 N -0.321 5.321 12 C -0.056 4.056 13 N -0.286 5.286 14 C -0.073 4.073 15 C -0.155 4.155 16 O -0.339 6.339 17 Si 0.689 3.311 18 C -0.381 4.381 19 C -0.121 4.121 20 S 0.357 5.643 21 C -0.150 4.150 22 C -0.149 4.149 23 H 0.263 0.737 24 H 0.104 0.896 25 H 0.108 0.892 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.259 0.741 31 H 0.150 0.850 32 H 0.234 0.766 33 H -0.233 1.233 34 H -0.220 1.220 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.089 1.813 -2.869 4.589 hybrid contribution 0.506 0.562 1.061 1.303 sum -2.583 2.375 -1.808 3.947 Atomic orbital electron populations 1.25849 0.96994 0.96328 0.99725 1.23256 0.95172 1.03354 1.01820 1.19302 0.84039 0.84602 1.02771 1.87965 1.22573 1.25924 1.95297 1.22323 0.79468 0.99490 0.95789 0.89956 1.21961 0.94831 1.03292 0.97297 1.21956 0.95381 0.98071 1.01330 1.21279 0.77188 0.98222 0.98765 0.90389 1.44122 1.06194 1.66363 1.15412 1.23506 0.90829 0.97134 0.94125 1.65743 1.11032 1.26493 1.25286 1.20236 0.98110 0.99693 0.89220 1.24500 0.92348 1.11648 0.86954 1.86583 1.87262 1.39698 1.20403 0.92881 0.73818 0.73592 0.90812 1.25363 0.93238 1.14765 1.04726 1.20196 1.02715 1.00248 0.88989 1.83946 1.09765 1.61210 1.09348 1.21667 0.94642 1.04753 0.93901 1.21498 0.94794 0.96725 1.01840 0.73660 0.89626 0.89219 0.90828 0.91488 0.91939 0.90014 0.74145 0.85023 0.76637 1.23286 1.22032 0.90556 0.91748 0.89501 0.89122 0.89522 0.90009 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.29 19.25 74.32 1.43 1.14 16 2 C -0.24 -0.94 13.73 31.12 0.43 -0.51 16 3 C 0.17 -0.09 6.22 70.18 0.44 0.34 16 4 O -0.40 -0.72 9.95 -148.98 -1.48 -2.21 16 5 C 0.09 -0.36 2.61 30.59 0.08 -0.28 16 6 H 0.08 -0.61 7.79 -2.39 -0.02 -0.63 16 7 C -0.14 0.60 5.54 30.60 0.17 0.77 16 8 C -0.13 0.68 5.51 30.60 0.17 0.85 16 9 C 0.15 -0.82 2.40 45.00 0.11 -0.71 16 10 H 0.08 -0.29 7.25 -2.39 -0.02 -0.31 16 11 N -0.68 1.98 5.23 -330.40 -1.73 0.25 16 12 C 0.32 0.81 8.22 179.32 1.47 2.28 16 13 N -0.56 -2.96 8.94 -189.87 -1.70 -4.65 16 14 C 0.06 0.29 5.92 41.40 0.25 0.53 16 15 C -0.04 -0.12 2.82 71.24 0.20 0.08 16 16 O -0.53 -1.39 9.90 -148.98 -1.47 -2.87 16 17 Si 0.78 2.60 32.08 68.60 2.20 4.80 16 18 C -0.26 -1.03 6.50 24.57 0.16 -0.87 16 19 C -0.06 -0.06 8.95 71.23 0.64 0.58 16 20 S 0.11 0.22 21.68 -56.49 -1.22 -1.01 16 21 C -0.11 0.92 5.39 30.59 0.16 1.08 16 22 C -0.11 0.60 5.57 30.59 0.17 0.77 16 23 H 0.25 -1.41 7.80 -4.43 -0.03 -1.44 16 24 H 0.09 -0.32 7.87 -2.39 -0.02 -0.34 16 25 H 0.09 -0.39 8.09 -2.39 -0.02 -0.41 16 26 H 0.07 -0.34 7.87 -2.39 -0.02 -0.36 16 27 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.06 -0.17 8.04 -2.39 -0.02 -0.19 16 29 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 30 H 0.42 -2.21 8.73 -92.71 -0.81 -3.02 16 31 H 0.13 0.13 7.96 -2.39 -0.02 0.11 16 32 H 0.38 -0.71 8.68 -74.06 -0.64 -1.35 16 33 H -0.31 -2.91 7.11 99.48 0.71 -2.21 16 34 H -0.29 -2.44 7.11 99.48 0.71 -1.73 16 35 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.09 0.17 6.62 -2.38 -0.02 0.16 16 38 H 0.09 -0.96 8.14 -2.38 -0.02 -0.97 16 39 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 40 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 41 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 Total: 0.00 -14.68 352.45 0.09 -14.59 By element: Atomic # 1 Polarization: -14.60 SS G_CDS: -0.37 Total: -14.98 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 5.87 Total: 6.06 kcal Atomic # 7 Polarization: -0.97 SS G_CDS: -3.43 Total: -4.40 kcal Atomic # 8 Polarization: -2.12 SS G_CDS: -2.96 Total: -5.07 kcal Atomic # 14 Polarization: 2.60 SS G_CDS: 2.20 Total: 4.80 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -1.22 Total: -1.01 kcal Total: -14.68 0.09 -14.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14940686_15704122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.948 kcal (2) G-P(sol) polarization free energy of solvation -14.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds