Wall clock time and date at job start Mon Mar 8 2021 08:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42904 * 109.47460 * 329.57915 * 3 2 1 5 5 C 1.42895 * 113.99892 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47554 * 30.00144 * 5 4 3 7 7 C 1.52997 * 109.46920 * 150.00077 * 5 4 3 8 8 C 1.53006 * 109.47127 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46626 * 299.99539 * 8 7 5 10 10 H 1.08993 * 109.47839 * 299.99931 * 9 8 7 11 11 N 1.46506 * 109.46691 * 179.97438 * 9 8 7 12 12 C 1.39145 * 119.99881 * 155.00300 * 11 9 8 13 13 N 1.32346 * 119.71628 * 0.02562 * 12 11 9 14 14 C 1.32014 * 121.64516 * 179.97438 * 13 12 11 15 15 C 1.37984 * 120.90047 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.32633 * 179.97438 * 15 14 13 17 17 O 1.42896 * 109.46666 * 120.00060 * 16 15 14 18 18 Si 1.86301 * 109.46965 * 0.02562 * 16 15 14 19 19 C 1.38907 * 119.34775 * 0.02562 * 15 14 13 20 20 C 1.38446 * 118.48341 * 359.74723 * 19 15 14 21 21 F 1.35103 * 120.47113 * 180.26971 * 20 19 15 22 22 C 1.52997 * 109.46991 * 60.00378 * 9 8 7 23 23 C 1.52996 * 109.47131 * 299.99311 * 22 9 8 24 24 H 4.38450 * 5.44358 * 179.97438 * 4 1 2 25 25 H 1.09003 * 109.47045 * 209.57754 * 3 2 1 26 26 H 1.09000 * 109.47009 * 89.58278 * 3 2 1 27 27 H 1.09001 * 109.47502 * 60.00157 * 7 5 4 28 28 H 1.09001 * 109.47289 * 299.99954 * 7 5 4 29 29 H 1.08993 * 109.46955 * 60.00011 * 8 7 5 30 30 H 1.09000 * 109.47050 * 179.97438 * 8 7 5 31 31 H 0.97000 * 120.00279 * 335.00513 * 11 9 8 32 32 H 1.07993 * 119.54718 * 180.02562 * 14 13 12 33 33 H 1.08995 * 109.47057 * 240.00654 * 16 15 14 34 34 H 0.96697 * 114.00700 * 299.99831 * 17 16 15 35 35 H 1.48498 * 110.00184 * 58.67961 * 18 16 15 36 36 H 1.48497 * 109.99853 * 180.02562 * 18 16 15 37 37 H 1.07997 * 120.75445 * 179.97438 * 19 15 14 38 38 H 1.09001 * 109.47289 * 179.97438 * 22 9 8 39 39 H 1.09000 * 109.47611 * 59.99933 * 22 9 8 40 40 H 1.08996 * 109.47452 * 300.00000 * 23 22 9 41 41 H 1.09000 * 109.47054 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 -1.1609 0.6822 5 6 4.5475 -1.2572 0.7398 6 1 4.9793 -0.2565 0.7485 7 6 4.9573 -2.0005 2.0127 8 6 6.4827 -2.1031 2.0747 9 6 6.9925 -2.8674 0.8513 10 1 6.5612 -3.8683 0.8424 11 7 8.4531 -2.9651 0.9104 12 6 9.1081 -4.0022 0.2536 13 7 8.4062 -4.8971 -0.4232 14 6 8.9883 -5.8959 -1.0606 15 6 10.3601 -6.0435 -1.0443 16 6 11.0110 -7.1890 -1.7759 17 8 11.9048 -6.6755 -2.7656 18 14 9.6999 -8.2239 -2.6011 19 6 11.1352 -5.1265 -0.3458 20 6 10.4979 -4.0865 0.3092 21 9 11.2129 -3.1688 0.9960 22 6 6.5827 -2.1241 -0.4216 23 6 5.0574 -2.0216 -0.4836 24 1 -1.0497 -0.0002 0.0003 25 1 3.0090 0.8946 0.5073 26 1 3.0093 -0.0067 -1.0276 27 1 4.5256 -3.0014 2.0040 28 1 4.5945 -1.4558 2.8843 29 1 6.9140 -1.1022 2.0836 30 1 6.7747 -2.6322 2.9818 31 1 8.9636 -2.3068 1.4073 32 1 8.3825 -6.6067 -1.6029 33 1 11.5670 -7.8034 -1.0678 34 1 11.4775 -6.1183 -3.4304 35 1 8.9143 -7.3898 -3.5457 36 1 10.3288 -9.3573 -3.3256 37 1 12.2107 -5.2205 -0.3176 38 1 6.9462 -2.6684 -1.2932 39 1 7.0141 -1.1232 -0.4128 40 1 4.6260 -3.0225 -0.4926 41 1 4.7654 -1.4924 -1.3907 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14940686_17656566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:54:44 Heat of formation + Delta-G solvation = -21.116228 kcal Electronic energy + Delta-G solvation = -24764.423105 eV Core-core repulsion = 20948.208979 eV Total energy + Delta-G solvation = -3816.214126 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.94970 -41.49486 -40.39563 -38.61009 -37.80349 -35.64897 -34.06924 -33.23524 -31.87218 -31.76149 -29.51567 -27.73752 -26.34907 -24.99525 -23.79008 -23.12326 -22.50189 -21.16340 -19.52142 -19.16369 -18.52392 -18.35239 -17.87991 -17.62736 -17.03784 -16.74856 -16.47455 -16.15369 -16.02926 -15.91915 -15.48871 -15.30253 -14.93685 -14.61007 -14.32405 -14.29102 -14.04348 -13.79281 -13.54498 -13.27288 -13.21393 -12.73335 -12.62275 -12.40168 -12.16034 -12.07135 -11.82099 -11.75776 -11.45490 -11.27231 -11.12687 -10.77089 -10.64146 -10.53089 -10.37834 -8.76718 -4.89364 -0.08033 0.11125 1.31564 1.48815 1.62736 1.79042 1.96764 1.99150 2.54254 2.87246 3.03048 3.28167 3.43004 3.53244 3.60042 3.63962 3.74390 3.85669 3.98223 4.05569 4.12321 4.16958 4.25794 4.32344 4.39480 4.44575 4.45728 4.47429 4.53642 4.69883 4.75815 4.81475 4.93570 4.98804 5.02140 5.05837 5.12896 5.15535 5.23890 5.32539 5.45522 5.98094 6.19297 6.20884 6.49670 6.57191 6.97204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.237 4.237 3 C 0.168 3.832 4 O -0.397 6.397 5 C 0.088 3.912 6 H 0.079 0.921 7 C -0.108 4.108 8 C -0.116 4.116 9 C 0.158 3.842 10 H 0.083 0.917 11 N -0.710 5.710 12 C 0.384 3.616 13 N -0.525 5.525 14 C 0.147 3.853 15 C -0.204 4.204 16 C -0.067 4.067 17 O -0.549 6.549 18 Si 0.763 3.237 19 C -0.040 4.040 20 C -0.038 4.038 21 F -0.141 7.141 22 C -0.118 4.118 23 C -0.133 4.133 24 H 0.248 0.752 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.416 0.584 32 H 0.181 0.819 33 H 0.130 0.870 34 H 0.386 0.614 35 H -0.278 1.278 36 H -0.301 1.301 37 H 0.154 0.846 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.493 0.821 1.087 2.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.237 4.237 3 C 0.093 3.907 4 O -0.317 6.317 5 C 0.031 3.969 6 H 0.097 0.903 7 C -0.146 4.146 8 C -0.154 4.154 9 C 0.054 3.946 10 H 0.101 0.899 11 N -0.342 5.342 12 C 0.146 3.854 13 N -0.243 5.243 14 C -0.010 4.010 15 C -0.209 4.209 16 C -0.176 4.176 17 O -0.357 6.357 18 Si 0.668 3.332 19 C -0.067 4.067 20 C -0.064 4.064 21 F -0.120 7.120 22 C -0.157 4.157 23 C -0.171 4.171 24 H 0.265 0.735 25 H 0.107 0.893 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.254 0.746 32 H 0.198 0.802 33 H 0.147 0.853 34 H 0.236 0.764 35 H -0.204 1.204 36 H -0.229 1.229 37 H 0.172 0.828 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.564 0.195 0.786 2.689 hybrid contribution 1.749 1.383 -0.615 2.313 sum -0.815 1.578 0.171 1.784 Atomic orbital electron populations 1.25852 0.96964 0.97101 0.98789 1.23234 0.95131 1.03040 1.02280 1.19294 0.84150 0.89126 0.98170 1.87962 1.22553 1.43865 1.77365 1.22298 0.79412 0.99735 0.95445 0.90266 1.21473 0.94897 1.01455 0.96824 1.21712 0.94740 1.01558 0.97405 1.20990 0.78278 1.00360 0.94986 0.89934 1.44712 1.07202 1.27461 1.54845 1.18573 0.86519 0.89387 0.90966 1.67378 1.38806 1.05172 1.12900 1.22683 0.91912 0.93060 0.93363 1.20895 0.94410 1.00829 1.04786 1.25020 1.01582 0.97318 0.93682 1.86580 1.37404 1.69950 1.41726 0.94174 0.78129 0.77044 0.83867 1.21424 1.01956 0.90969 0.92321 1.18137 0.88789 0.94303 1.05176 1.91467 1.77862 1.64719 1.77913 1.21798 0.94937 1.00862 0.98062 1.21931 0.95212 1.01588 0.98392 0.73539 0.89301 0.89730 0.91404 0.90262 0.89880 0.90024 0.74600 0.80230 0.85274 0.76438 1.20411 1.22863 0.82840 0.92337 0.91175 0.91646 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.42 19.25 74.32 1.43 1.01 16 2 C -0.24 -1.20 13.73 31.13 0.43 -0.78 16 3 C 0.17 0.18 6.22 70.18 0.44 0.61 16 4 O -0.40 -1.51 9.95 -148.98 -1.48 -2.99 16 5 C 0.09 -0.14 2.61 30.59 0.08 -0.06 16 6 H 0.08 -0.37 7.79 -2.39 -0.02 -0.39 16 7 C -0.11 0.29 5.57 30.60 0.17 0.46 16 8 C -0.12 0.58 5.39 30.60 0.16 0.75 16 9 C 0.16 -0.31 2.47 44.99 0.11 -0.20 16 10 H 0.08 0.09 7.54 -2.39 -0.02 0.07 16 11 N -0.71 0.46 5.22 -324.28 -1.69 -1.23 16 12 C 0.38 1.07 7.47 133.08 0.99 2.07 16 13 N -0.53 -1.48 9.20 -193.03 -1.78 -3.26 16 14 C 0.15 -0.10 9.84 84.60 0.83 0.73 16 15 C -0.20 0.22 5.40 -19.76 -0.11 0.12 16 16 C -0.07 0.18 2.84 71.24 0.20 0.39 16 17 O -0.55 -0.34 12.78 -148.98 -1.90 -2.24 16 18 Si 0.76 -3.05 29.82 68.60 2.05 -1.01 16 19 C -0.04 -0.05 9.75 22.48 0.22 0.17 16 20 C -0.04 -0.12 7.35 22.58 0.17 0.04 16 21 F -0.14 -0.64 16.65 44.97 0.75 0.11 16 22 C -0.12 0.21 5.51 30.59 0.17 0.38 16 23 C -0.13 0.18 5.54 30.59 0.17 0.35 16 24 H 0.25 -1.28 7.80 -4.43 -0.03 -1.32 16 25 H 0.09 -0.25 8.08 -2.39 -0.02 -0.27 16 26 H 0.08 -0.17 7.87 -2.39 -0.02 -0.19 16 27 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 30 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 31 H 0.42 -1.23 8.07 -92.71 -0.75 -1.98 16 32 H 0.18 -0.97 4.88 -2.91 -0.01 -0.99 16 33 H 0.13 -0.59 7.96 -2.39 -0.02 -0.61 16 34 H 0.39 -1.82 8.70 -74.06 -0.64 -2.47 16 35 H -0.28 0.11 7.11 99.48 0.71 0.81 16 36 H -0.30 -1.21 7.11 99.48 0.71 -0.51 16 37 H 0.15 -0.06 8.06 -2.91 -0.02 -0.08 16 38 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.07 -0.12 7.87 -2.39 -0.02 -0.14 16 Total: 0.00 -15.18 348.38 1.10 -14.08 By element: Atomic # 1 Polarization: -9.20 SS G_CDS: -0.30 Total: -9.50 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 5.47 Total: 6.04 kcal Atomic # 7 Polarization: -1.02 SS G_CDS: -3.47 Total: -4.49 kcal Atomic # 8 Polarization: -1.85 SS G_CDS: -3.39 Total: -5.24 kcal Atomic # 9 Polarization: -0.64 SS G_CDS: 0.75 Total: 0.11 kcal Atomic # 14 Polarization: -3.05 SS G_CDS: 2.05 Total: -1.01 kcal Total: -15.18 1.10 -14.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14940686_17656566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.036 kcal (2) G-P(sol) polarization free energy of solvation -15.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds