Wall clock time and date at job start Mon Mar 8 2021 06:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99794 * 2 1 4 4 C 1.53003 * 109.46711 * 269.99602 * 3 2 1 5 5 H 1.09002 * 112.84873 * 316.19408 * 4 3 2 6 6 C 1.53779 * 113.61494 * 87.50968 * 4 3 2 7 7 C 1.53777 * 87.08456 * 139.97909 * 6 4 3 8 8 H 1.08998 * 113.69322 * 89.12078 * 7 6 4 9 9 O 1.42899 * 113.61274 * 220.02097 * 7 6 4 10 10 C 1.42907 * 113.99702 * 247.49222 * 9 7 6 11 11 C 1.53001 * 109.46666 * 60.00263 * 10 9 7 12 12 C 1.53001 * 109.46832 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47163 * 300.00337 * 10 9 7 14 14 C 1.53785 * 113.61104 * 185.00572 * 4 3 2 15 15 C 1.39002 * 119.99848 * 179.97438 * 2 1 3 16 16 N 1.32393 * 119.70320 * 185.00549 * 15 2 1 17 17 C 1.31975 * 121.62238 * 180.02562 * 16 15 2 18 18 C 1.38021 * 120.85607 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.33803 * 179.97438 * 18 17 16 20 20 O 1.42901 * 109.47511 * 120.02073 * 19 18 17 21 21 Si 1.86297 * 109.46900 * 0.02562 * 19 18 17 22 22 C 1.38885 * 119.33146 * 359.97438 * 18 17 16 23 23 C 1.38298 * 118.50320 * 0.02562 * 22 18 17 24 24 H 1.08997 * 109.47022 * 270.00337 * 1 2 3 25 25 H 1.09003 * 109.46803 * 30.00485 * 1 2 3 26 26 H 1.08996 * 109.47041 * 150.00319 * 1 2 3 27 27 H 1.08991 * 109.47485 * 29.99605 * 3 2 1 28 28 H 1.09000 * 109.46586 * 150.00294 * 3 2 1 29 29 H 1.09006 * 113.61036 * 254.52923 * 6 4 3 30 30 H 1.08995 * 113.61532 * 25.42300 * 6 4 3 31 31 H 1.08990 * 109.47542 * 59.99861 * 11 10 9 32 32 H 1.09003 * 109.46781 * 180.02562 * 11 10 9 33 33 H 1.09003 * 109.46942 * 299.99206 * 11 10 9 34 34 H 1.09002 * 109.47076 * 60.00287 * 12 10 9 35 35 H 1.09003 * 109.46597 * 179.97438 * 12 10 9 36 36 H 1.09004 * 109.46993 * 300.00044 * 12 10 9 37 37 H 1.09002 * 109.47558 * 59.99481 * 13 10 9 38 38 H 1.08998 * 109.46940 * 180.02562 * 13 10 9 39 39 H 1.09002 * 109.47123 * 299.99944 * 13 10 9 40 40 H 1.09003 * 113.61257 * 334.56292 * 14 4 3 41 41 H 1.08994 * 113.61836 * 105.39061 * 14 4 3 42 42 H 1.07998 * 119.57374 * 180.02562 * 17 16 15 43 43 H 1.09000 * 109.47083 * 240.02269 * 19 18 17 44 44 H 0.96699 * 113.99785 * 179.97438 * 20 19 18 45 45 H 1.48502 * 110.00189 * 60.00373 * 21 19 18 46 46 H 1.48501 * 110.00286 * 181.32045 * 21 19 18 47 47 H 1.07994 * 120.75285 * 179.72113 * 22 18 17 48 48 H 1.08004 * 120.45571 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7103 -1.4426 5 1 2.7835 0.8929 -2.0832 6 6 1.3072 2.5419 -2.0439 7 6 2.3903 3.4191 -2.6936 8 1 2.7042 3.0705 -3.6775 9 8 2.0862 4.8152 -2.6704 10 6 1.8376 5.3774 -3.9604 11 6 0.6462 4.6665 -4.6055 12 6 1.5253 6.8682 -3.8154 13 6 3.0757 5.1996 -4.8415 14 6 3.3233 2.9728 -1.5555 15 6 2.1600 -1.2038 0.0005 16 7 3.4801 -1.1991 0.1009 17 6 4.1778 -2.3194 0.1047 18 6 3.5502 -3.5445 0.0040 19 6 4.3583 -4.8165 0.0090 20 8 3.9599 -5.6298 1.1144 21 14 6.1679 -4.4018 0.1638 22 6 2.1662 -3.5933 -0.1020 23 6 1.4621 -2.4030 -0.1033 24 1 -0.3633 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6085 2.0284 0.5137 28 1 3.1499 1.1383 0.5138 29 1 0.7002 1.9927 -2.7637 30 1 0.7100 3.0662 -1.2979 31 1 -0.2358 4.7932 -3.9779 32 1 0.4569 5.0951 -5.5897 33 1 0.8693 3.6046 -4.7089 34 1 2.3744 7.3743 -3.3560 35 1 1.3361 7.2971 -4.7995 36 1 0.6433 6.9952 -3.1875 37 1 3.2988 4.1376 -4.9448 38 1 2.8862 5.6288 -5.8253 39 1 3.9245 5.7060 -4.3819 40 1 3.2773 3.6151 -0.6760 41 1 4.3443 2.7715 -1.8797 42 1 5.2537 -2.2770 0.1886 43 1 4.1880 -5.3588 -0.9210 44 1 4.4396 -6.4668 1.1799 45 1 6.4132 -3.6622 1.4280 46 1 6.9782 -5.6460 0.1379 47 1 1.6519 -4.5391 -0.1865 48 1 0.3851 -2.4042 -0.1847 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15093194_13915762.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:09:20 Heat of formation + Delta-G solvation = 3.386622 kcal Electronic energy + Delta-G solvation = -25751.919484 eV Core-core repulsion = 22196.061281 eV Total energy + Delta-G solvation = -3555.858203 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.50123 -40.81071 -38.85491 -37.97630 -36.80466 -33.86497 -33.53388 -32.09874 -29.68580 -28.39511 -28.33226 -27.71617 -26.53072 -25.27167 -24.64338 -23.25114 -21.85728 -20.76929 -20.52283 -18.57397 -18.51923 -17.91778 -17.56720 -16.74073 -16.60317 -16.18244 -15.92674 -15.80887 -15.65561 -15.39957 -14.83199 -14.59115 -14.54670 -14.19349 -14.04370 -13.96986 -13.80041 -13.43003 -13.39280 -13.30758 -13.18350 -12.98046 -12.85013 -12.75446 -12.66014 -12.39177 -12.14679 -12.02566 -11.95401 -11.75000 -11.31660 -11.22398 -10.91596 -10.69272 -10.52061 -10.32162 -10.26962 -8.49234 -4.92713 0.23580 0.42401 1.32525 1.59273 1.94918 1.96107 2.74274 2.82085 3.41737 3.48615 3.59309 3.69098 3.83030 3.85676 3.86370 3.92631 4.00977 4.02296 4.09711 4.11551 4.18795 4.28608 4.36827 4.39543 4.49762 4.58891 4.61884 4.67242 4.70926 4.77968 4.78479 4.81111 4.83925 4.86206 4.90906 4.91894 4.94483 4.95446 5.00101 5.06994 5.14849 5.23558 5.33000 5.33048 5.35991 5.44439 5.57306 6.00188 6.36774 6.45008 6.62536 7.13303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.609 5.609 3 C 0.142 3.858 4 C -0.109 4.109 5 H 0.081 0.919 6 C -0.140 4.140 7 C 0.060 3.940 8 H 0.092 0.908 9 O -0.381 6.381 10 C 0.098 3.902 11 C -0.172 4.172 12 C -0.139 4.139 13 C -0.177 4.177 14 C -0.127 4.127 15 C 0.392 3.608 16 N -0.556 5.556 17 C 0.144 3.856 18 C -0.201 4.201 19 C -0.065 4.065 20 O -0.560 6.560 21 Si 0.751 3.249 22 C -0.013 4.013 23 C -0.244 4.244 24 H 0.056 0.944 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.164 0.836 43 H 0.096 0.904 44 H 0.394 0.606 45 H -0.302 1.302 46 H -0.282 1.282 47 H 0.145 0.855 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.750 -0.356 -4.783 5.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.322 5.322 3 C 0.019 3.981 4 C -0.129 4.129 5 H 0.099 0.901 6 C -0.177 4.177 7 C 0.003 3.997 8 H 0.110 0.890 9 O -0.301 6.301 10 C 0.059 3.941 11 C -0.229 4.229 12 C -0.196 4.196 13 C -0.234 4.234 14 C -0.165 4.165 15 C 0.157 3.843 16 N -0.273 5.273 17 C -0.013 4.013 18 C -0.206 4.206 19 C -0.174 4.174 20 O -0.370 6.370 21 Si 0.656 3.344 22 C -0.039 4.039 23 C -0.268 4.268 24 H 0.074 0.926 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.181 0.819 43 H 0.114 0.886 44 H 0.244 0.756 45 H -0.230 1.230 46 H -0.209 1.209 47 H 0.163 0.837 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.146 1.142 -3.986 4.302 hybrid contribution -0.590 -2.004 0.486 2.145 sum -1.736 -0.862 -3.499 4.000 Atomic orbital electron populations 1.21903 0.77104 1.04195 1.02160 1.46522 1.05838 1.02250 1.77563 1.21354 0.97274 0.83949 0.95508 1.22554 0.97233 0.95918 0.97197 0.90062 1.23532 0.96762 0.97039 1.00407 1.23670 0.96438 0.81017 0.98599 0.89031 1.88014 1.89839 1.23122 1.29135 1.21664 0.94446 0.94544 0.83410 1.22423 0.98110 1.00772 1.01613 1.21792 1.02099 0.92656 1.03077 1.22451 0.97902 1.02415 1.00677 1.23197 0.98375 0.95979 0.98999 1.18646 0.88405 0.86890 0.90319 1.67167 1.06976 1.31577 1.21590 1.22383 0.99570 0.86692 0.92643 1.20121 0.95321 0.94741 1.10388 1.24659 1.09147 0.91693 0.91935 1.86545 1.65185 1.35436 1.49803 0.94375 0.72880 0.81433 0.85677 1.21379 0.93098 0.98518 0.90912 1.21706 1.02132 0.91343 1.11635 0.92563 0.89708 0.90131 0.89917 0.90761 0.91268 0.89492 0.92218 0.90669 0.92292 0.92380 0.89793 0.92269 0.92100 0.90411 0.92288 0.89472 0.90856 0.81940 0.88649 0.75565 1.22953 1.20890 0.83682 0.83022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.30 10.28 127.77 1.31 1.01 16 2 N -0.61 -1.23 2.99 -728.84 -2.18 -3.41 16 3 C 0.14 0.21 5.31 86.38 0.46 0.67 16 4 C -0.11 -0.04 3.96 -10.27 -0.04 -0.08 16 5 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 6 C -0.14 0.09 7.04 31.12 0.22 0.31 16 7 C 0.06 0.07 2.82 31.12 0.09 0.15 16 8 H 0.09 0.01 5.54 -2.39 -0.01 -0.01 16 9 O -0.38 -1.69 10.00 -148.98 -1.49 -3.18 16 10 C 0.10 0.09 1.11 -10.79 -0.01 0.08 16 11 C -0.17 0.19 8.39 71.98 0.60 0.79 16 12 C -0.14 0.01 8.84 71.98 0.64 0.64 16 13 C -0.18 0.12 8.38 71.98 0.60 0.73 16 14 C -0.13 -0.13 7.47 31.12 0.23 0.11 16 15 C 0.39 2.25 7.37 133.07 0.98 3.23 16 16 N -0.56 -4.44 9.08 -193.27 -1.75 -6.20 16 17 C 0.14 0.80 9.84 84.62 0.83 1.63 16 18 C -0.20 -0.84 5.43 -19.76 -0.11 -0.95 16 19 C -0.06 -0.02 2.83 71.24 0.20 0.18 16 20 O -0.56 -1.55 12.75 -148.98 -1.90 -3.45 16 21 Si 0.75 -0.50 29.82 68.60 2.05 1.54 16 22 C -0.01 -0.05 9.77 22.44 0.22 0.17 16 23 C -0.24 -0.78 9.27 22.50 0.21 -0.57 16 24 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 25 H 0.08 -0.47 7.64 -2.39 -0.02 -0.49 16 26 H 0.08 -0.43 5.98 -2.39 -0.01 -0.45 16 27 H 0.08 -0.04 7.77 -2.39 -0.02 -0.06 16 28 H 0.07 0.37 7.30 -2.39 -0.02 0.35 16 29 H 0.07 -0.09 8.14 -2.38 -0.02 -0.11 16 30 H 0.09 -0.01 7.90 -2.39 -0.02 -0.03 16 31 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 33 H 0.06 -0.07 7.02 -2.39 -0.02 -0.09 16 34 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 36 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 37 H 0.06 -0.06 6.24 -2.39 -0.01 -0.08 16 38 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 39 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.09 0.17 8.10 -2.39 -0.02 0.15 16 41 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.16 0.29 4.88 -2.91 -0.01 0.28 16 43 H 0.10 -0.39 7.96 -2.39 -0.02 -0.41 16 44 H 0.39 -2.11 8.74 -74.06 -0.65 -2.75 16 45 H -0.30 -2.22 7.11 99.48 0.71 -1.51 16 46 H -0.28 -0.80 7.11 99.48 0.71 -0.09 16 47 H 0.15 0.05 8.06 -2.91 -0.02 0.02 16 48 H 0.15 -0.22 6.03 -2.91 -0.02 -0.23 16 Total: 0.00 -14.23 375.69 1.49 -12.75 By element: Atomic # 1 Polarization: -6.49 SS G_CDS: 0.33 Total: -6.16 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 6.44 Total: 8.11 kcal Atomic # 7 Polarization: -5.67 SS G_CDS: -3.93 Total: -9.60 kcal Atomic # 8 Polarization: -3.24 SS G_CDS: -3.39 Total: -6.63 kcal Atomic # 14 Polarization: -0.50 SS G_CDS: 2.05 Total: 1.54 kcal Total: -14.23 1.49 -12.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15093194_13915762.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.133 kcal (2) G-P(sol) polarization free energy of solvation -14.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds