Wall clock time and date at job start Mon Mar 8 2021 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46500 * 119.99853 * 2 1 4 4 C 1.52999 * 109.46733 * 269.99288 * 3 2 1 5 5 H 1.09004 * 112.85054 * 43.81024 * 4 3 2 6 6 C 1.53784 * 113.61344 * 175.00323 * 4 3 2 7 7 C 1.53775 * 87.08142 * 139.98514 * 6 4 3 8 8 H 1.08997 * 113.62071 * 89.19973 * 7 6 4 9 9 O 1.42907 * 113.61244 * 220.01958 * 7 6 4 10 10 C 1.42895 * 113.99876 * 209.99628 * 9 7 6 11 11 C 1.53006 * 109.47036 * 60.00359 * 10 9 7 12 12 C 1.52997 * 109.47356 * 300.00216 * 10 9 7 13 13 C 1.52999 * 109.47283 * 179.97438 * 10 9 7 14 14 C 1.53780 * 113.61853 * 272.49992 * 4 3 2 15 15 C 1.38609 * 119.99694 * 179.97438 * 2 1 3 16 16 N 1.29691 * 124.94397 * 179.69853 * 15 2 1 17 17 C 1.32125 * 116.86021 * 179.81709 * 16 15 2 18 18 C 1.33327 * 114.58220 * 0.47306 * 17 16 15 19 19 C 1.50697 * 125.95296 * 179.75486 * 18 17 16 20 20 O 1.42896 * 109.47345 * 119.99531 * 19 18 17 21 21 Si 1.86302 * 109.46887 * 359.97438 * 19 18 17 22 22 S 1.70965 * 124.95075 * 0.02562 * 15 2 1 23 23 H 1.09006 * 109.46663 * 90.00310 * 1 2 3 24 24 H 1.09002 * 109.46946 * 210.00168 * 1 2 3 25 25 H 1.08998 * 109.47038 * 330.00399 * 1 2 3 26 26 H 1.09003 * 109.47115 * 149.99774 * 3 2 1 27 27 H 1.08993 * 109.47534 * 29.99823 * 3 2 1 28 28 H 1.09001 * 113.61470 * 25.43168 * 6 4 3 29 29 H 1.09001 * 113.61109 * 254.53213 * 6 4 3 30 30 H 1.09001 * 109.47002 * 299.99477 * 11 10 9 31 31 H 1.08993 * 109.46955 * 59.99914 * 11 10 9 32 32 H 1.09000 * 109.47050 * 179.97438 * 11 10 9 33 33 H 1.09000 * 109.47140 * 180.02562 * 12 10 9 34 34 H 1.09001 * 109.47230 * 299.99260 * 12 10 9 35 35 H 1.09001 * 109.47375 * 60.00099 * 12 10 9 36 36 H 1.09001 * 109.47362 * 300.00863 * 13 10 9 37 37 H 1.09002 * 109.46716 * 60.00223 * 13 10 9 38 38 H 1.09000 * 109.47486 * 180.02562 * 13 10 9 39 39 H 1.08994 * 113.61633 * 105.46851 * 14 4 3 40 40 H 1.09005 * 113.61363 * 334.57025 * 14 4 3 41 41 H 1.08004 * 122.70685 * 180.22686 * 17 16 15 42 42 H 1.08999 * 109.47236 * 239.99722 * 19 18 17 43 43 H 0.96696 * 114.00406 * 300.00489 * 20 19 18 44 44 H 1.48510 * 109.99621 * 180.02562 * 21 19 18 45 45 H 1.48497 * 109.99846 * 301.31761 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7102 -1.4425 5 1 1.5793 1.5882 -2.0833 6 6 3.1107 3.0956 -1.5555 7 6 3.9637 2.5107 -2.6935 8 1 3.5051 2.6081 -3.6775 9 8 5.3248 2.9454 -2.6702 10 6 5.9361 3.0110 -3.9601 11 6 5.1632 3.9944 -4.8414 12 6 5.9162 1.6238 -4.6051 13 6 7.3833 3.4858 -3.8151 14 6 3.7454 1.1341 -2.0437 15 6 2.1580 -1.2004 0.0005 16 7 3.4501 -1.3123 -0.0050 17 6 3.9432 -2.5380 0.0003 18 6 3.0254 -3.5051 0.0008 19 6 3.3012 -4.9866 0.0010 20 8 2.7265 -5.5779 1.1681 21 14 5.1416 -5.2757 -0.0002 22 16 1.4341 -2.7492 0.0006 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 3.1500 1.1384 0.5139 27 1 1.6085 2.0284 0.5138 28 1 3.6898 3.3769 -0.6760 29 1 2.4262 3.8788 -1.8812 30 1 4.1320 3.6565 -4.9448 31 1 5.1774 4.9826 -4.3818 32 1 5.6298 4.0448 -5.8252 33 1 6.3829 1.6738 -5.5889 34 1 6.4669 0.9232 -3.9774 35 1 4.8850 1.2859 -4.7086 36 1 7.3972 4.4742 -3.3557 37 1 7.9342 2.7856 -3.1872 38 1 7.8495 3.5363 -4.7991 39 1 3.5735 0.3338 -2.7634 40 1 4.4981 0.8791 -1.2976 41 1 5.0042 -2.7403 0.0000 42 1 2.8622 -5.4381 -0.8887 43 1 3.0712 -5.2234 1.9991 44 1 5.4268 -6.7331 -0.0006 45 1 5.7550 -4.6383 -1.1930 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15093194_15704118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:09:24 Heat of formation + Delta-G solvation = 2.534455 kcal Electronic energy + Delta-G solvation = -24705.245263 eV Core-core repulsion = 21238.502353 eV Total energy + Delta-G solvation = -3466.742910 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.09088 -40.47264 -38.82197 -37.84786 -36.92341 -33.78173 -31.75737 -29.90764 -28.39563 -28.36192 -28.05643 -26.48063 -25.48279 -24.57060 -23.11867 -20.96356 -20.51682 -20.24886 -19.52948 -17.71009 -17.63761 -17.29582 -16.80046 -16.37995 -16.17043 -15.85083 -15.78450 -15.67401 -15.34015 -14.62218 -14.57128 -14.44863 -14.28993 -13.86880 -13.73637 -13.46796 -13.41273 -13.24125 -13.16882 -12.88908 -12.79332 -12.75206 -12.65536 -12.19510 -12.10616 -12.03096 -11.98485 -11.73189 -11.30602 -11.19586 -10.88456 -10.49030 -10.35701 -10.23506 -10.02069 -8.55127 -5.03203 0.03207 0.17205 0.81003 1.47428 1.64798 1.83064 1.99541 2.06682 2.79530 3.44260 3.48619 3.65529 3.73365 3.85210 3.87841 3.91920 3.94301 4.02824 4.04524 4.11731 4.16135 4.26265 4.41026 4.44939 4.45688 4.53379 4.58151 4.63755 4.69289 4.75264 4.78251 4.84956 4.87743 4.91666 4.95395 4.96204 5.09997 5.12597 5.15863 5.28905 5.33086 5.38210 5.52294 5.67590 6.02422 6.50536 6.56671 7.01451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.581 5.581 3 C 0.144 3.856 4 C -0.129 4.129 5 H 0.089 0.911 6 C -0.127 4.127 7 C 0.059 3.941 8 H 0.086 0.914 9 O -0.360 6.360 10 C 0.106 3.894 11 C -0.179 4.179 12 C -0.175 4.175 13 C -0.139 4.139 14 C -0.133 4.133 15 C 0.318 3.682 16 N -0.543 5.543 17 C 0.097 3.903 18 C -0.308 4.308 19 C -0.023 4.023 20 O -0.542 6.542 21 Si 0.702 3.298 22 S 0.116 5.884 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.173 0.827 42 H 0.112 0.888 43 H 0.380 0.620 44 H -0.251 1.251 45 H -0.254 1.254 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.301 2.414 0.557 2.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.299 5.299 3 C 0.020 3.980 4 C -0.149 4.149 5 H 0.107 0.893 6 C -0.165 4.165 7 C 0.001 3.999 8 H 0.103 0.897 9 O -0.280 6.280 10 C 0.067 3.933 11 C -0.236 4.236 12 C -0.232 4.232 13 C -0.196 4.196 14 C -0.170 4.170 15 C -0.051 4.051 16 N -0.267 5.267 17 C -0.055 4.055 18 C -0.431 4.431 19 C -0.135 4.135 20 O -0.347 6.347 21 Si 0.602 3.398 22 S 0.367 5.633 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.109 0.891 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.117 0.883 41 H 0.189 0.811 42 H 0.129 0.871 43 H 0.227 0.773 44 H -0.176 1.176 45 H -0.179 1.179 Dipole moment (debyes) X Y Z Total from point charges -1.693 2.050 -0.149 2.662 hybrid contribution 0.064 -0.077 -0.737 0.744 sum -1.628 1.973 -0.886 2.707 Atomic orbital electron populations 1.21861 0.77437 1.03673 1.02367 1.45943 1.04904 1.01454 1.77611 1.21546 0.97798 0.82862 0.95811 1.22756 0.97969 0.96817 0.97350 0.89309 1.23203 0.97791 0.96021 0.99487 1.23655 0.82919 0.95249 0.98105 0.89666 1.88039 1.24804 1.87180 1.27955 1.21500 0.93806 0.94263 0.83764 1.22469 1.00575 1.00149 1.00406 1.22454 1.02397 0.97109 1.01287 1.21766 0.93324 1.02089 1.02416 1.23478 0.97062 0.96083 1.00405 1.23683 0.91559 0.91945 0.97876 1.66422 1.08805 1.24734 1.26784 1.21306 1.00292 0.85420 0.98486 1.25925 0.94582 1.00874 1.21767 1.24389 1.11072 0.87045 0.91027 1.86495 1.68346 1.64371 1.15466 0.94651 0.74707 0.82012 0.88435 1.84078 1.09446 0.96589 1.73201 0.92173 0.91187 0.89733 0.89129 0.90217 0.88880 0.91047 0.92349 0.91632 0.91463 0.91690 0.91673 0.92475 0.91781 0.91733 0.91176 0.92376 0.88264 0.81069 0.87077 0.77280 1.17603 1.17863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.21 10.45 59.85 0.63 0.41 16 2 N -0.58 -0.03 2.98 -183.92 -0.55 -0.57 16 3 C 0.14 -0.08 5.41 -4.04 -0.02 -0.10 16 4 C -0.13 0.05 3.96 -89.81 -0.36 -0.30 16 5 H 0.09 -0.04 8.14 -51.93 -0.42 -0.47 16 6 C -0.13 0.04 7.47 -25.92 -0.19 -0.16 16 7 C 0.06 0.06 2.82 -25.92 -0.07 -0.02 16 8 H 0.09 0.04 5.54 -51.93 -0.29 -0.25 16 9 O -0.36 -0.95 10.00 -35.23 -0.35 -1.30 16 10 C 0.11 0.11 1.11 -90.62 -0.10 0.01 16 11 C -0.18 -0.02 8.38 37.16 0.31 0.29 16 12 C -0.17 -0.12 8.39 37.16 0.31 0.19 16 13 C -0.14 -0.07 8.84 37.16 0.33 0.26 16 14 C -0.13 -0.18 7.20 -25.92 -0.19 -0.36 16 15 C 0.32 0.60 7.74 -87.68 -0.68 -0.08 16 16 N -0.54 -1.52 9.55 -15.20 -0.15 -1.67 16 17 C 0.10 0.15 10.07 -19.14 -0.19 -0.04 16 18 C -0.31 -0.41 5.93 -36.02 -0.21 -0.62 16 19 C -0.02 -0.01 3.08 36.00 0.11 0.10 16 20 O -0.54 -0.45 12.88 -35.23 -0.45 -0.91 16 21 Si 0.70 -0.56 30.49 -169.99 -5.18 -5.74 16 22 S 0.12 0.16 21.68 -107.50 -2.33 -2.17 16 23 H 0.06 -0.17 8.14 -51.93 -0.42 -0.59 16 24 H 0.07 -0.17 7.04 -51.93 -0.37 -0.53 16 25 H 0.08 -0.34 7.89 -51.93 -0.41 -0.75 16 26 H 0.09 0.09 7.32 -51.93 -0.38 -0.29 16 27 H 0.08 -0.18 7.89 -51.93 -0.41 -0.59 16 28 H 0.09 0.02 8.10 -51.93 -0.42 -0.40 16 29 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 30 H 0.06 -0.01 6.24 -51.93 -0.32 -0.33 16 31 H 0.06 0.03 8.14 -51.93 -0.42 -0.40 16 32 H 0.07 -0.04 8.14 -51.93 -0.42 -0.47 16 33 H 0.06 -0.01 8.14 -51.93 -0.42 -0.44 16 34 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 35 H 0.06 0.05 7.02 -51.93 -0.36 -0.32 16 36 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 37 H 0.06 0.06 8.14 -51.93 -0.42 -0.37 16 38 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 39 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 40 H 0.10 0.30 7.90 -51.93 -0.41 -0.11 16 41 H 0.17 -0.07 5.85 -52.48 -0.31 -0.38 16 42 H 0.11 0.12 7.96 -51.93 -0.41 -0.30 16 43 H 0.38 -1.10 8.70 45.56 0.40 -0.71 16 44 H -0.25 -0.54 7.11 56.52 0.40 -0.14 16 45 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 LS Contribution 369.66 15.07 5.57 5.57 Total: 0.00 -5.65 369.66 -11.32 -16.96 By element: Atomic # 1 Polarization: -2.22 SS G_CDS: -7.54 Total: -9.77 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -0.33 Total: -0.40 kcal Atomic # 7 Polarization: -1.55 SS G_CDS: -0.69 Total: -2.24 kcal Atomic # 8 Polarization: -1.41 SS G_CDS: -0.81 Total: -2.21 kcal Atomic # 14 Polarization: -0.56 SS G_CDS: -5.18 Total: -5.74 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.33 Total: -2.17 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -5.65 -11.32 -16.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15093194_15704118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.499 kcal (2) G-P(sol) polarization free energy of solvation -5.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds