Wall clock time and date at job start Mon Mar 8 2021 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46500 * 119.99853 * 2 1 4 4 C 1.52999 * 109.46733 * 269.99288 * 3 2 1 5 5 H 1.09004 * 112.85054 * 43.81024 * 4 3 2 6 6 C 1.53784 * 113.61344 * 175.00323 * 4 3 2 7 7 C 1.53775 * 87.08142 * 139.98514 * 6 4 3 8 8 H 1.08997 * 113.62071 * 89.19973 * 7 6 4 9 9 O 1.42907 * 113.61244 * 220.01958 * 7 6 4 10 10 C 1.42895 * 113.99876 * 209.99628 * 9 7 6 11 11 C 1.53006 * 109.47036 * 60.00359 * 10 9 7 12 12 C 1.52997 * 109.47356 * 300.00216 * 10 9 7 13 13 C 1.52999 * 109.47283 * 179.97438 * 10 9 7 14 14 C 1.53780 * 113.61853 * 272.49992 * 4 3 2 15 15 C 1.38609 * 119.99694 * 179.97438 * 2 1 3 16 16 N 1.29691 * 124.94397 * 179.69853 * 15 2 1 17 17 C 1.32125 * 116.86021 * 179.81709 * 16 15 2 18 18 C 1.33327 * 114.58220 * 0.47306 * 17 16 15 19 19 C 1.50697 * 125.95296 * 179.75486 * 18 17 16 20 20 O 1.42896 * 109.47345 * 119.99531 * 19 18 17 21 21 Si 1.86302 * 109.46887 * 359.97438 * 19 18 17 22 22 S 1.70965 * 124.95075 * 0.02562 * 15 2 1 23 23 H 1.09006 * 109.46663 * 90.00310 * 1 2 3 24 24 H 1.09002 * 109.46946 * 210.00168 * 1 2 3 25 25 H 1.08998 * 109.47038 * 330.00399 * 1 2 3 26 26 H 1.09003 * 109.47115 * 149.99774 * 3 2 1 27 27 H 1.08993 * 109.47534 * 29.99823 * 3 2 1 28 28 H 1.09001 * 113.61470 * 25.43168 * 6 4 3 29 29 H 1.09001 * 113.61109 * 254.53213 * 6 4 3 30 30 H 1.09001 * 109.47002 * 299.99477 * 11 10 9 31 31 H 1.08993 * 109.46955 * 59.99914 * 11 10 9 32 32 H 1.09000 * 109.47050 * 179.97438 * 11 10 9 33 33 H 1.09000 * 109.47140 * 180.02562 * 12 10 9 34 34 H 1.09001 * 109.47230 * 299.99260 * 12 10 9 35 35 H 1.09001 * 109.47375 * 60.00099 * 12 10 9 36 36 H 1.09001 * 109.47362 * 300.00863 * 13 10 9 37 37 H 1.09002 * 109.46716 * 60.00223 * 13 10 9 38 38 H 1.09000 * 109.47486 * 180.02562 * 13 10 9 39 39 H 1.08994 * 113.61633 * 105.46851 * 14 4 3 40 40 H 1.09005 * 113.61363 * 334.57025 * 14 4 3 41 41 H 1.08004 * 122.70685 * 180.22686 * 17 16 15 42 42 H 1.08999 * 109.47236 * 239.99722 * 19 18 17 43 43 H 0.96696 * 114.00406 * 300.00489 * 20 19 18 44 44 H 1.48510 * 109.99621 * 180.02562 * 21 19 18 45 45 H 1.48497 * 109.99846 * 301.31761 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7102 -1.4425 5 1 1.5793 1.5882 -2.0833 6 6 3.1107 3.0956 -1.5555 7 6 3.9637 2.5107 -2.6935 8 1 3.5051 2.6081 -3.6775 9 8 5.3248 2.9454 -2.6702 10 6 5.9361 3.0110 -3.9601 11 6 5.1632 3.9944 -4.8414 12 6 5.9162 1.6238 -4.6051 13 6 7.3833 3.4858 -3.8151 14 6 3.7454 1.1341 -2.0437 15 6 2.1580 -1.2004 0.0005 16 7 3.4501 -1.3123 -0.0050 17 6 3.9432 -2.5380 0.0003 18 6 3.0254 -3.5051 0.0008 19 6 3.3012 -4.9866 0.0010 20 8 2.7265 -5.5779 1.1681 21 14 5.1416 -5.2757 -0.0002 22 16 1.4341 -2.7492 0.0006 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 3.1500 1.1384 0.5139 27 1 1.6085 2.0284 0.5138 28 1 3.6898 3.3769 -0.6760 29 1 2.4262 3.8788 -1.8812 30 1 4.1320 3.6565 -4.9448 31 1 5.1774 4.9826 -4.3818 32 1 5.6298 4.0448 -5.8252 33 1 6.3829 1.6738 -5.5889 34 1 6.4669 0.9232 -3.9774 35 1 4.8850 1.2859 -4.7086 36 1 7.3972 4.4742 -3.3557 37 1 7.9342 2.7856 -3.1872 38 1 7.8495 3.5363 -4.7991 39 1 3.5735 0.3338 -2.7634 40 1 4.4981 0.8791 -1.2976 41 1 5.0042 -2.7403 0.0000 42 1 2.8622 -5.4381 -0.8887 43 1 3.0712 -5.2234 1.9991 44 1 5.4268 -6.7331 -0.0006 45 1 5.7550 -4.6383 -1.1930 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15093194_15704118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:09:23 Heat of formation + Delta-G solvation = 8.169818 kcal Electronic energy + Delta-G solvation = -24705.000895 eV Core-core repulsion = 21238.502353 eV Total energy + Delta-G solvation = -3466.498542 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.150 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.14871 -40.55544 -38.85969 -37.89244 -36.92999 -33.86499 -31.82068 -29.86808 -28.41072 -28.39355 -28.06304 -26.54252 -25.49797 -24.63159 -23.14905 -21.02637 -20.57134 -20.28926 -19.58374 -17.77687 -17.67088 -17.34733 -16.84069 -16.43089 -16.20199 -15.89207 -15.81015 -15.70480 -15.37820 -14.69681 -14.62404 -14.47983 -14.25106 -13.95308 -13.63141 -13.42845 -13.41333 -13.32591 -13.15916 -12.92567 -12.83257 -12.76484 -12.70690 -12.24124 -12.21848 -12.07097 -12.06457 -11.75090 -11.35094 -11.24286 -10.92493 -10.55592 -10.44412 -10.32863 -10.12373 -8.58091 -5.00850 -0.05750 0.10304 0.73722 1.45643 1.63969 1.86532 1.93689 1.99097 2.74442 3.44355 3.51243 3.63201 3.70081 3.81718 3.84202 3.87527 3.90148 3.99135 4.07502 4.14663 4.19712 4.36363 4.39245 4.48847 4.53111 4.56802 4.61252 4.63408 4.72853 4.75131 4.77267 4.82396 4.87154 4.87359 4.89902 4.92677 5.05162 5.06212 5.09892 5.23959 5.28548 5.33210 5.46018 5.74311 5.99829 6.43393 6.71714 6.93956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.580 5.580 3 C 0.145 3.855 4 C -0.116 4.116 5 H 0.095 0.905 6 C -0.119 4.119 7 C 0.056 3.944 8 H 0.091 0.909 9 O -0.380 6.380 10 C 0.099 3.901 11 C -0.175 4.175 12 C -0.171 4.171 13 C -0.139 4.139 14 C -0.130 4.130 15 C 0.311 3.689 16 N -0.566 5.566 17 C 0.089 3.911 18 C -0.313 4.313 19 C -0.029 4.029 20 O -0.556 6.556 21 Si 0.792 3.208 22 S 0.113 5.887 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.106 0.894 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.042 0.958 40 H 0.078 0.922 41 H 0.186 0.814 42 H 0.103 0.897 43 H 0.395 0.605 44 H -0.290 1.290 45 H -0.285 1.285 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.030 3.269 0.546 3.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.298 5.298 3 C 0.021 3.979 4 C -0.136 4.136 5 H 0.114 0.886 6 C -0.157 4.157 7 C -0.002 4.002 8 H 0.109 0.891 9 O -0.300 6.300 10 C 0.060 3.940 11 C -0.233 4.233 12 C -0.229 4.229 13 C -0.196 4.196 14 C -0.168 4.168 15 C -0.058 4.058 16 N -0.291 5.291 17 C -0.062 4.062 18 C -0.436 4.436 19 C -0.141 4.141 20 O -0.364 6.364 21 Si 0.696 3.304 22 S 0.364 5.636 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.124 0.876 26 H 0.091 0.909 27 H 0.121 0.879 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.097 0.903 41 H 0.202 0.798 42 H 0.121 0.879 43 H 0.245 0.755 44 H -0.217 1.217 45 H -0.212 1.212 Dipole moment (debyes) X Y Z Total from point charges -2.452 2.930 -0.137 3.823 hybrid contribution 0.284 -0.354 -0.754 0.880 sum -2.168 2.576 -0.891 3.483 Atomic orbital electron populations 1.22063 0.75913 1.04719 1.03108 1.46201 1.05849 1.00980 1.76779 1.21556 0.97516 0.83187 0.95650 1.22685 0.97195 0.96328 0.97439 0.88640 1.23144 0.97555 0.96319 0.98711 1.23764 0.82593 0.94996 0.98815 0.89086 1.88017 1.25649 1.87312 1.29042 1.21643 0.94166 0.94652 0.83502 1.22436 1.00644 0.99587 1.00593 1.22419 1.02133 0.96740 1.01599 1.21789 0.93106 1.01639 1.03068 1.23358 0.97755 0.95975 0.99733 1.23921 0.91529 0.92729 0.97634 1.66453 1.09460 1.25369 1.27834 1.21548 1.01062 0.85268 0.98369 1.26018 0.94503 1.01155 1.21945 1.24553 1.12187 0.86491 0.90864 1.86454 1.68883 1.64688 1.16341 0.93556 0.72120 0.78356 0.86385 1.84005 1.09663 0.96541 1.73431 0.91533 0.91247 0.87602 0.90918 0.87873 0.89396 0.89621 0.92109 0.91898 0.90460 0.90551 0.92846 0.92746 0.92023 0.92533 0.89767 0.93875 0.90317 0.79782 0.87925 0.75458 1.21688 1.21169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.48 10.45 127.77 1.34 0.86 16 2 N -0.58 0.04 2.98 -735.79 -2.19 -2.15 16 3 C 0.15 -0.19 5.41 86.38 0.47 0.27 16 4 C -0.12 0.11 3.96 -10.27 -0.04 0.07 16 5 H 0.10 -0.18 8.14 -2.38 -0.02 -0.20 16 6 C -0.12 0.11 7.47 31.12 0.23 0.34 16 7 C 0.06 0.13 2.82 31.12 0.09 0.22 16 8 H 0.09 0.08 5.54 -2.39 -0.01 0.07 16 9 O -0.38 -2.33 10.00 -148.98 -1.49 -3.82 16 10 C 0.10 0.25 1.11 -10.79 -0.01 0.24 16 11 C -0.18 0.03 8.38 71.98 0.60 0.63 16 12 C -0.17 -0.34 8.39 71.98 0.60 0.26 16 13 C -0.14 -0.19 8.84 71.98 0.64 0.45 16 14 C -0.13 -0.50 7.20 31.12 0.22 -0.28 16 15 C 0.31 1.36 7.74 179.32 1.39 2.75 16 16 N -0.57 -3.80 9.55 -202.02 -1.93 -5.73 16 17 C 0.09 0.36 10.07 83.54 0.84 1.20 16 18 C -0.31 -1.05 5.93 24.57 0.15 -0.91 16 19 C -0.03 -0.05 3.08 71.24 0.22 0.17 16 20 O -0.56 -1.04 12.88 -148.98 -1.92 -2.96 16 21 Si 0.79 -0.83 30.49 68.60 2.09 1.26 16 22 S 0.11 0.38 21.68 -56.49 -1.22 -0.84 16 23 H 0.07 -0.44 8.14 -2.38 -0.02 -0.46 16 24 H 0.07 -0.36 7.04 -2.39 -0.02 -0.38 16 25 H 0.11 -1.05 7.89 -2.39 -0.02 -1.07 16 26 H 0.07 0.20 7.32 -2.39 -0.02 0.19 16 27 H 0.10 -0.61 7.89 -2.39 -0.02 -0.63 16 28 H 0.09 0.04 8.10 -2.39 -0.02 0.02 16 29 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 30 H 0.06 -0.04 6.24 -2.39 -0.01 -0.06 16 31 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 33 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.05 0.13 7.02 -2.39 -0.02 0.11 16 36 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.04 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.08 0.65 7.90 -2.38 -0.02 0.63 16 41 H 0.19 -0.01 5.85 -2.91 -0.02 -0.03 16 42 H 0.10 0.31 7.96 -2.39 -0.02 0.29 16 43 H 0.40 -2.34 8.70 -74.06 -0.64 -2.99 16 44 H -0.29 -1.54 7.11 99.48 0.71 -0.83 16 45 H -0.28 -1.14 7.11 99.48 0.71 -0.44 16 Total: 0.00 -14.17 369.66 0.43 -13.74 By element: Atomic # 1 Polarization: -6.16 SS G_CDS: 0.36 Total: -5.79 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 6.73 Total: 6.29 kcal Atomic # 7 Polarization: -3.76 SS G_CDS: -4.12 Total: -7.88 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: -3.41 Total: -6.77 kcal Atomic # 14 Polarization: -0.83 SS G_CDS: 2.09 Total: 1.26 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -1.22 Total: -0.84 kcal Total: -14.17 0.43 -13.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15093194_15704118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.907 kcal (2) G-P(sol) polarization free energy of solvation -14.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds