Wall clock time and date at job start Mon Mar 8 2021 06:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33326 * 125.95736 * 2 1 4 4 C 1.50696 * 122.70738 * 359.96907 * 3 2 1 5 5 O 1.42903 * 109.47131 * 329.72878 * 4 3 2 6 6 Si 1.86305 * 109.47185 * 209.73419 * 4 3 2 7 7 N 1.32121 * 114.58065 * 179.69547 * 3 2 1 8 8 C 1.29687 * 116.86620 * 0.27190 * 7 3 2 9 9 N 1.38610 * 124.94721 * 179.97438 * 8 7 3 10 10 C 1.46502 * 119.99830 * 359.97438 * 9 8 7 11 11 C 1.46497 * 119.99672 * 179.97438 * 9 8 7 12 12 C 1.53003 * 109.47130 * 90.00398 * 11 9 8 13 13 H 1.08996 * 112.85208 * 43.79544 * 12 11 9 14 14 C 1.53785 * 113.61592 * 174.99841 * 12 11 9 15 15 C 1.53784 * 87.07832 * 139.97643 * 14 12 11 16 16 H 1.08999 * 113.61359 * 89.20567 * 15 14 12 17 17 O 1.42908 * 113.61140 * 220.01651 * 15 14 12 18 18 C 1.42900 * 113.99885 * 210.00545 * 17 15 14 19 19 C 1.52996 * 109.47290 * 59.99952 * 18 17 15 20 20 C 1.52995 * 109.47212 * 180.02562 * 18 17 15 21 21 C 1.53002 * 109.46742 * 300.00300 * 18 17 15 22 22 C 1.53769 * 87.08396 * 334.56669 * 15 14 12 23 23 S 1.70964 * 110.09953 * 359.97438 * 8 7 3 24 24 H 1.09001 * 109.46966 * 89.99456 * 1 2 3 25 25 H 1.08993 * 109.47394 * 210.00456 * 1 2 3 26 26 H 1.09008 * 109.46529 * 330.00106 * 1 2 3 27 27 H 1.08999 * 109.47358 * 89.73238 * 4 3 2 28 28 H 0.96700 * 114.00311 * 300.00591 * 5 4 3 29 29 H 1.48499 * 109.99670 * 58.67633 * 6 4 3 30 30 H 1.48497 * 110.00233 * 179.97438 * 6 4 3 31 31 H 1.09003 * 109.46844 * 90.00191 * 10 9 8 32 32 H 1.09003 * 109.46486 * 210.00050 * 10 9 8 33 33 H 1.08998 * 109.47289 * 330.00115 * 10 9 8 34 34 H 1.08999 * 109.47108 * 209.99910 * 11 9 8 35 35 H 1.08995 * 109.47327 * 330.00322 * 11 9 8 36 36 H 1.08999 * 113.61033 * 254.52462 * 14 12 11 37 37 H 1.08998 * 113.61228 * 25.43135 * 14 12 11 38 38 H 1.08998 * 109.47511 * 59.99932 * 19 18 17 39 39 H 1.08996 * 109.47087 * 180.02562 * 19 18 17 40 40 H 1.09003 * 109.47385 * 300.00384 * 19 18 17 41 41 H 1.08993 * 109.47257 * 59.99336 * 20 18 17 42 42 H 1.08997 * 109.47580 * 179.97438 * 20 18 17 43 43 H 1.09006 * 109.46784 * 299.99972 * 20 18 17 44 44 H 1.08999 * 109.47618 * 59.99939 * 21 18 17 45 45 H 1.09007 * 109.46602 * 180.02562 * 21 18 17 46 46 H 1.09001 * 109.46989 * 299.99824 * 21 18 17 47 47 H 1.09001 * 113.61758 * 270.88087 * 22 15 14 48 48 H 1.09002 * 113.61690 * 139.98020 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2899 1.0792 0.0000 4 6 1.7416 2.4829 -0.0007 5 8 0.4847 2.5030 -0.6804 6 14 2.9367 3.6160 -0.8717 7 7 3.5851 0.8186 0.0064 8 6 3.9315 -0.4312 0.0063 9 7 5.2384 -0.8929 0.0119 10 6 6.3516 0.0594 0.0180 11 6 5.5064 -2.3331 0.0117 12 6 5.6065 -2.8331 -1.4308 13 1 6.1937 -2.1720 -2.0681 14 6 6.0074 -4.3135 -1.5434 15 6 4.9843 -4.4223 -2.6863 16 1 5.4009 -4.1973 -3.6681 17 8 4.2324 -5.6374 -2.6677 18 6 3.8167 -6.0835 -3.9601 19 6 5.0473 -6.3274 -4.8357 20 6 3.0239 -7.3845 -3.8200 21 6 2.9332 -5.0156 -4.6083 22 6 4.2523 -3.2351 -2.0388 23 16 2.5412 -1.4261 -0.0018 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5139 27 1 1.6045 2.8199 1.0268 28 1 0.5313 2.2144 -1.6022 29 1 3.1567 3.1487 -2.2640 30 1 2.4073 5.0034 -0.8797 31 1 6.6229 0.2946 1.0473 32 1 7.2086 -0.3803 -0.4923 33 1 6.0516 0.9724 -0.4963 34 1 6.4454 -2.5280 0.5297 35 1 4.6955 -2.8536 0.5212 36 1 7.0382 -4.4634 -1.8643 37 1 5.7460 -4.9045 -0.6656 38 1 5.6769 -7.0881 -4.3740 39 1 4.7302 -6.6672 -5.8216 40 1 5.6119 -5.4003 -4.9355 41 1 2.1471 -7.2103 -3.1963 42 1 2.7063 -7.7245 -4.8057 43 1 3.6530 -8.1453 -3.3580 44 1 3.4976 -4.0885 -4.7081 45 1 2.6157 -5.3561 -5.5939 46 1 2.0564 -4.8418 -3.9845 47 1 3.5111 -3.5313 -1.2966 48 1 3.8662 -2.5144 -2.7597 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15093194_15704122.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:09:26 Heat of formation + Delta-G solvation = 5.323024 kcal Electronic energy + Delta-G solvation = -26981.722987 eV Core-core repulsion = 23359.563380 eV Total energy + Delta-G solvation = -3622.159607 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.166 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.20825 -40.87926 -39.04657 -37.96782 -36.76234 -33.87148 -32.89068 -29.97688 -29.45621 -28.39694 -28.38130 -27.30142 -26.53084 -25.61752 -24.18836 -22.61075 -20.86139 -20.69292 -20.08390 -19.21035 -18.09737 -17.73451 -17.28407 -16.93777 -16.55129 -16.16363 -15.80666 -15.76967 -15.73896 -15.32904 -14.68715 -14.56254 -14.39875 -14.30910 -13.84413 -13.68656 -13.57496 -13.49508 -13.39584 -13.35707 -13.26296 -12.94589 -12.91208 -12.80935 -12.77167 -12.68806 -12.44511 -12.20862 -12.08620 -11.94581 -11.78769 -11.38161 -11.25179 -10.84192 -10.61458 -10.45490 -10.33504 -9.98296 -8.46025 -4.81014 -0.01140 0.16028 0.77097 1.28802 1.65325 1.80334 1.83663 1.99644 2.73634 3.22194 3.39415 3.52053 3.62103 3.77390 3.80724 3.89395 3.97774 4.07391 4.10724 4.13292 4.21917 4.31691 4.40332 4.45873 4.54423 4.55964 4.58980 4.65658 4.75455 4.75708 4.77343 4.80621 4.81472 4.84684 4.85268 4.90239 4.92555 5.00305 5.02712 5.10573 5.11520 5.18289 5.28261 5.30021 5.32751 5.39419 5.77294 6.02918 6.37787 6.42357 6.91373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.263 4.263 3 C 0.058 3.942 4 C -0.042 4.042 5 O -0.533 6.533 6 Si 0.782 3.218 7 N -0.555 5.555 8 C 0.314 3.686 9 N -0.579 5.579 10 C 0.097 3.903 11 C 0.133 3.867 12 C -0.121 4.121 13 H 0.102 0.898 14 C -0.120 4.120 15 C 0.058 3.942 16 H 0.094 0.906 17 O -0.379 6.379 18 C 0.100 3.900 19 C -0.176 4.176 20 C -0.140 4.140 21 C -0.173 4.173 22 C -0.150 4.150 23 S 0.107 5.893 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.131 0.869 28 H 0.384 0.616 29 H -0.305 1.305 30 H -0.291 1.291 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.074 0.926 46 H 0.055 0.945 47 H 0.083 0.917 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.155 -3.122 -0.920 5.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.386 4.386 3 C -0.073 4.073 4 C -0.154 4.154 5 O -0.339 6.339 6 Si 0.688 3.312 7 N -0.283 5.283 8 C -0.056 4.056 9 N -0.298 5.298 10 C -0.046 4.046 11 C 0.010 3.990 12 C -0.141 4.141 13 H 0.121 0.879 14 C -0.158 4.158 15 C 0.000 4.000 16 H 0.112 0.888 17 O -0.299 6.299 18 C 0.061 3.939 19 C -0.233 4.233 20 C -0.197 4.197 21 C -0.231 4.231 22 C -0.188 4.188 23 S 0.359 5.641 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.148 0.852 28 H 0.233 0.767 29 H -0.233 1.233 30 H -0.219 1.219 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.133 0.867 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.102 0.898 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.457 -3.233 -0.823 5.567 hybrid contribution -1.168 0.457 -1.002 1.605 sum 3.289 -2.776 -1.825 4.675 Atomic orbital electron populations 1.20164 0.85937 1.02990 1.02869 1.25398 1.02023 0.93534 1.17666 1.20229 0.87116 0.97451 1.02462 1.24494 0.91903 0.95127 1.03891 1.86580 1.28728 1.89168 1.29457 0.92932 0.85285 0.73773 0.79205 1.65719 1.16965 1.16983 1.28666 1.23550 0.92221 0.91462 0.98412 1.46145 0.99745 1.06811 1.77089 1.21815 0.87594 0.92755 1.02470 1.21789 1.03821 0.77097 0.96252 1.22789 0.97652 0.96705 0.96997 0.87947 1.23178 0.99277 0.94511 0.98826 1.23713 0.92994 0.84260 0.98995 0.88843 1.88016 1.72213 1.40741 1.28897 1.21631 0.94101 0.94723 0.83427 1.22441 0.97872 1.02429 1.00608 1.21790 0.99744 0.95093 1.03039 1.22438 1.00191 0.98817 1.01607 1.23644 0.97131 0.97543 1.00497 1.83992 0.96226 1.09866 1.74066 0.90742 0.91927 0.89589 0.85152 0.76711 1.23280 1.21926 0.92179 0.88995 0.91227 0.86654 0.90829 0.89486 0.89025 0.91947 0.90601 0.91990 0.92431 0.89909 0.92086 0.92494 0.90714 0.92556 0.89833 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.13 8.95 71.24 0.64 0.50 16 2 C -0.26 -1.40 6.50 24.57 0.16 -1.24 16 3 C 0.06 0.35 5.92 41.40 0.24 0.60 16 4 C -0.04 -0.16 2.82 71.23 0.20 0.05 16 5 O -0.53 -1.87 9.91 -148.98 -1.48 -3.35 16 6 Si 0.78 3.12 32.08 68.60 2.20 5.32 16 7 N -0.56 -3.64 8.16 -189.87 -1.55 -5.19 16 8 C 0.31 1.38 7.74 179.32 1.39 2.76 16 9 N -0.58 0.33 2.98 -735.81 -2.19 -1.86 16 10 C 0.10 -0.37 10.56 127.77 1.35 0.98 16 11 C 0.13 -0.58 5.22 86.38 0.45 -0.13 16 12 C -0.12 0.52 3.97 -10.26 -0.04 0.48 16 13 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 14 C -0.12 0.50 7.47 31.12 0.23 0.73 16 15 C 0.06 -0.05 2.82 31.12 0.09 0.04 16 16 H 0.09 -0.19 5.54 -2.39 -0.01 -0.20 16 17 O -0.38 -1.18 10.00 -148.98 -1.49 -2.67 16 18 C 0.10 0.03 1.11 -10.80 -0.01 0.02 16 19 C -0.18 0.32 8.38 71.98 0.60 0.93 16 20 C -0.14 0.06 8.84 71.98 0.64 0.69 16 21 C -0.17 0.07 8.38 71.98 0.60 0.68 16 22 C -0.15 0.09 6.40 31.12 0.20 0.29 16 23 S 0.11 0.39 19.39 -56.49 -1.10 -0.71 16 24 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 25 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.09 0.27 6.63 -2.38 -0.02 0.25 16 27 H 0.13 0.26 7.96 -2.39 -0.02 0.24 16 28 H 0.38 -0.32 8.68 -74.06 -0.64 -0.96 16 29 H -0.31 -3.10 7.11 99.48 0.71 -2.39 16 30 H -0.29 -2.57 7.11 99.48 0.71 -1.86 16 31 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 32 H 0.09 -0.76 8.07 -2.39 -0.02 -0.78 16 33 H 0.07 -0.08 7.62 -2.39 -0.02 -0.10 16 34 H 0.12 -0.98 8.07 -2.39 -0.02 -1.00 16 35 H 0.07 -0.21 6.75 -2.39 -0.02 -0.23 16 36 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 37 H 0.09 -0.30 8.10 -2.39 -0.02 -0.32 16 38 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 39 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H 0.06 -0.16 6.24 -2.39 -0.01 -0.17 16 41 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 42 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 43 H 0.06 0.01 8.14 -2.38 -0.02 -0.01 16 44 H 0.06 -0.02 7.02 -2.39 -0.02 -0.04 16 45 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 46 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 47 H 0.08 0.13 6.67 -2.39 -0.02 0.11 16 48 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 Total: 0.00 -11.95 385.04 1.47 -10.48 By element: Atomic # 1 Polarization: -9.72 SS G_CDS: 0.33 Total: -9.39 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 6.74 Total: 7.37 kcal Atomic # 7 Polarization: -3.31 SS G_CDS: -3.74 Total: -7.06 kcal Atomic # 8 Polarization: -3.05 SS G_CDS: -2.97 Total: -6.02 kcal Atomic # 14 Polarization: 3.12 SS G_CDS: 2.20 Total: 5.32 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -1.10 Total: -0.71 kcal Total: -11.95 1.47 -10.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15093194_15704122.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.808 kcal (2) G-P(sol) polarization free energy of solvation -11.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds