Wall clock time and date at job start Mon Mar 8 2021 06:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 110.99996 * 2 1 4 4 C 1.52999 * 109.47056 * 66.04707 * 3 2 1 5 5 H 1.08993 * 112.90825 * 316.24939 * 4 3 2 6 6 C 1.53962 * 113.66529 * 87.55186 * 4 3 2 7 7 C 1.53782 * 87.11063 * 139.88900 * 6 4 3 8 8 H 1.08996 * 113.68722 * 89.19879 * 7 6 4 9 9 O 1.42901 * 113.61110 * 220.08969 * 7 6 4 10 10 C 1.42904 * 113.99605 * 247.49723 * 9 7 6 11 11 C 1.52999 * 109.47242 * 60.00153 * 10 9 7 12 12 C 1.53005 * 109.46933 * 180.02562 * 10 9 7 13 13 C 1.52995 * 109.47278 * 300.00124 * 10 9 7 14 14 C 1.53781 * 87.08260 * 334.63747 * 7 6 4 15 15 C 1.39147 * 110.99872 * 236.04765 * 2 1 3 16 16 N 1.32336 * 119.71989 * 123.67988 * 15 2 1 17 17 C 1.32007 * 121.64937 * 179.71003 * 16 15 2 18 18 C 1.37984 * 120.89950 * 0.56862 * 17 16 15 19 19 C 1.50698 * 120.32729 * 179.74268 * 18 17 16 20 20 O 1.42907 * 109.46809 * 119.97703 * 19 18 17 21 21 Si 1.86298 * 109.47277 * 359.97438 * 19 18 17 22 22 C 1.38906 * 119.34514 * 359.72056 * 18 17 16 23 23 C 1.38439 * 118.48549 * 0.02562 * 22 18 17 24 24 F 1.35103 * 120.47178 * 180.02562 * 23 22 18 25 25 H 1.08999 * 109.47011 * 59.99735 * 1 2 3 26 26 H 1.09000 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47190 * 300.00012 * 1 2 3 28 28 H 1.09002 * 109.47616 * 306.04529 * 3 2 1 29 29 H 1.09004 * 109.47026 * 186.04606 * 3 2 1 30 30 H 1.08997 * 113.53543 * 25.33574 * 6 4 3 31 31 H 1.08994 * 113.66446 * 254.45777 * 6 4 3 32 32 H 1.09008 * 109.46788 * 59.99854 * 11 10 9 33 33 H 1.08995 * 109.46967 * 179.97438 * 11 10 9 34 34 H 1.09002 * 109.47088 * 300.00173 * 11 10 9 35 35 H 1.09008 * 109.46839 * 60.00174 * 12 10 9 36 36 H 1.09000 * 109.46906 * 180.02562 * 12 10 9 37 37 H 1.08999 * 109.47243 * 300.00427 * 12 10 9 38 38 H 1.08998 * 109.47614 * 60.00015 * 13 10 9 39 39 H 1.09000 * 109.47201 * 179.97438 * 13 10 9 40 40 H 1.09008 * 109.47321 * 300.00332 * 13 10 9 41 41 H 1.09002 * 113.61445 * 139.98212 * 14 7 6 42 42 H 1.09002 * 113.61408 * 270.79943 * 14 7 6 43 43 H 1.07996 * 119.55373 * 180.29121 * 17 16 15 44 44 H 1.08998 * 109.47057 * 239.97525 * 19 18 17 45 45 H 0.96696 * 113.99664 * 179.97438 * 20 19 18 46 46 H 1.48504 * 109.99748 * 59.99977 * 21 19 18 47 47 H 1.48496 * 109.99936 * 181.31729 * 21 19 18 48 48 H 1.07999 * 120.75722 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 1 0.6015 1.8718 1.6229 6 6 2.6585 1.8229 2.4411 7 6 2.4533 3.2965 2.8301 8 1 1.6488 3.4516 3.5490 9 8 3.6617 3.9653 3.1967 10 6 3.7281 4.3309 4.5766 11 6 3.6273 3.0738 5.4427 12 6 5.0570 5.0367 4.8538 13 6 2.5708 5.2743 4.9104 14 6 2.0318 3.5412 1.3716 15 6 1.9676 -0.7255 -1.0776 16 7 2.7977 -0.1467 -1.9303 17 6 3.2979 -0.8007 -2.9622 18 6 2.9614 -2.1181 -3.1969 19 6 3.5356 -2.8506 -4.3821 20 8 4.2804 -3.9824 -3.9274 21 14 4.6594 -1.7088 -5.3330 22 6 2.0886 -2.7627 -2.3296 23 6 1.5838 -2.0535 -1.2531 24 9 0.7323 -2.6411 -0.3842 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.5611 1.9274 -0.8309 29 1 3.0797 1.3443 -0.1082 30 1 3.6614 1.6036 2.0748 31 1 2.3215 1.1194 3.2023 32 1 4.4519 2.4016 5.2048 33 1 3.6783 3.3526 6.4951 34 1 2.6804 2.5713 5.2451 35 1 5.1283 5.9325 4.2367 36 1 5.1078 5.3152 5.9064 37 1 5.8817 4.3650 4.6158 38 1 1.6238 4.7720 4.7128 39 1 2.6211 5.5528 5.9630 40 1 2.6425 6.1701 4.2933 41 1 1.1889 4.2248 1.2695 42 1 2.8632 3.7931 0.7133 43 1 3.9763 -0.2964 -3.6344 44 1 2.7253 -3.1853 -5.0298 45 1 4.6793 -4.5021 -4.6386 46 1 5.7684 -1.2455 -4.4609 47 1 5.2071 -2.4096 -6.5221 48 1 1.8094 -3.7933 -2.4919 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15093194_17656566.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:09:29 Heat of formation + Delta-G solvation = -35.957369 kcal Electronic energy + Delta-G solvation = -28257.237619 eV Core-core repulsion = 24230.219356 eV Total energy + Delta-G solvation = -4027.018262 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -50.12313 -41.80880 -40.86240 -39.16400 -38.09321 -37.16807 -33.89324 -33.57668 -32.07068 -29.43285 -28.36267 -28.34977 -27.91286 -26.55986 -25.49538 -25.04630 -23.16950 -22.31781 -20.76660 -20.48446 -18.95879 -18.61332 -18.47545 -18.09027 -17.66658 -17.14004 -16.58323 -16.32631 -16.23935 -16.02980 -15.83281 -15.77559 -15.20529 -14.87354 -14.62600 -14.50464 -14.32763 -14.30181 -14.10318 -13.89663 -13.56304 -13.37491 -13.26092 -13.15664 -12.88006 -12.80160 -12.70768 -12.66739 -12.58161 -12.24169 -12.12027 -11.85092 -11.61189 -11.41979 -11.26040 -11.08259 -10.85741 -10.68961 -10.48997 -10.32261 -9.19335 -4.94297 -0.31470 -0.09403 1.24159 1.59309 1.94872 2.16751 2.34740 2.75940 2.97947 3.11987 3.27648 3.53081 3.59477 3.66053 3.73362 3.80913 3.84930 3.91983 3.96361 4.01657 4.09862 4.13848 4.21944 4.27249 4.32014 4.39727 4.47187 4.54922 4.62104 4.63824 4.66212 4.73279 4.77944 4.83841 4.84546 4.85888 4.86467 4.91074 4.93039 4.94810 5.05328 5.13627 5.19340 5.27180 5.32811 5.34483 5.46807 5.55229 5.88045 6.45563 6.55715 6.63284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.482 5.482 3 C 0.085 3.915 4 C -0.101 4.101 5 H 0.109 0.891 6 C -0.141 4.141 7 C 0.060 3.940 8 H 0.100 0.900 9 O -0.383 6.383 10 C 0.098 3.902 11 C -0.173 4.173 12 C -0.140 4.140 13 C -0.175 4.175 14 C -0.125 4.125 15 C 0.284 3.716 16 N -0.504 5.504 17 C 0.121 3.879 18 C -0.131 4.131 19 C -0.074 4.074 20 O -0.558 6.558 21 Si 0.761 3.239 22 C -0.060 4.060 23 C 0.017 3.983 24 F -0.128 7.128 25 H 0.047 0.953 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.183 0.817 44 H 0.108 0.892 45 H 0.399 0.601 46 H -0.297 1.297 47 H -0.278 1.278 48 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.523 1.450 -2.707 4.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.199 5.199 3 C -0.041 4.041 4 C -0.120 4.120 5 H 0.127 0.873 6 C -0.179 4.179 7 C 0.002 3.998 8 H 0.118 0.882 9 O -0.303 6.303 10 C 0.059 3.941 11 C -0.230 4.230 12 C -0.197 4.197 13 C -0.233 4.233 14 C -0.163 4.163 15 C 0.050 3.950 16 N -0.218 5.218 17 C -0.036 4.036 18 C -0.135 4.135 19 C -0.183 4.183 20 O -0.369 6.369 21 Si 0.665 3.335 22 C -0.086 4.086 23 C -0.007 4.007 24 F -0.107 7.107 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.122 0.878 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.199 0.801 44 H 0.126 0.874 45 H 0.251 0.749 46 H -0.224 1.224 47 H -0.205 1.205 48 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.464 2.525 -1.888 4.002 hybrid contribution -0.092 -2.133 -0.279 2.153 sum -2.557 0.392 -2.167 3.374 Atomic orbital electron populations 1.22809 0.82521 1.04590 1.03464 1.59134 1.10437 1.16127 1.34174 1.21975 1.00610 0.84542 0.96964 1.22412 1.00163 0.95196 0.94203 0.87283 1.23492 0.99219 0.96815 0.98401 1.23719 0.87743 0.91991 0.96305 0.88192 1.88021 1.39203 1.76974 1.26137 1.21672 0.96693 0.94219 0.81533 1.22436 1.02264 0.97580 1.00760 1.21797 0.94987 1.00282 1.02607 1.22436 0.98081 0.99738 1.03018 1.23197 1.01553 0.95843 0.95706 1.20190 0.94609 0.90408 0.89800 1.67773 1.12528 1.37607 1.03860 1.22757 0.96103 0.91410 0.93315 1.20251 0.99261 0.95137 0.98834 1.24823 1.01841 0.94117 0.97549 1.86540 1.70982 1.40678 1.38699 0.94252 0.79740 0.83386 0.76121 1.21581 0.94367 1.01312 0.91385 1.18219 0.97716 0.91826 0.92961 1.91451 1.67704 1.83620 1.67889 0.93403 0.89890 0.87839 0.92510 0.90698 0.91215 0.91401 0.92796 0.90534 0.92098 0.92208 0.89705 0.92653 0.91777 0.90419 0.92114 0.89605 0.89995 0.80110 0.87390 0.74948 1.22425 1.20484 0.81956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.05 127.69 1.16 1.16 16 2 N -0.48 -2.22 4.74 -726.43 -3.44 -5.66 16 3 C 0.09 0.26 4.05 86.30 0.35 0.61 16 4 C -0.10 0.00 3.71 -10.20 -0.04 -0.04 16 5 H 0.11 -0.30 6.26 -2.39 -0.01 -0.31 16 6 C -0.14 -0.41 7.47 31.18 0.23 -0.17 16 7 C 0.06 0.11 2.82 31.12 0.09 0.20 16 8 H 0.10 -0.07 5.54 -2.39 -0.01 -0.08 16 9 O -0.38 -2.31 10.00 -148.98 -1.49 -3.80 16 10 C 0.10 0.21 1.11 -10.79 -0.01 0.19 16 11 C -0.17 -0.14 8.39 71.98 0.60 0.47 16 12 C -0.14 -0.19 8.84 71.98 0.64 0.45 16 13 C -0.18 0.12 8.38 71.98 0.60 0.72 16 14 C -0.12 -0.04 7.47 31.12 0.23 0.19 16 15 C 0.28 1.91 6.41 133.08 0.85 2.77 16 16 N -0.50 -3.19 8.61 -193.03 -1.66 -4.85 16 17 C 0.12 0.30 9.84 84.61 0.83 1.13 16 18 C -0.13 -0.19 5.43 -19.77 -0.11 -0.30 16 19 C -0.07 0.23 2.83 71.24 0.20 0.43 16 20 O -0.56 0.07 12.75 -148.98 -1.90 -1.83 16 21 Si 0.76 -3.21 29.82 68.60 2.05 -1.16 16 22 C -0.06 -0.19 9.75 22.48 0.22 0.03 16 23 C 0.02 0.11 6.99 22.58 0.16 0.26 16 24 F -0.13 -0.91 14.79 44.97 0.67 -0.24 16 25 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 26 H 0.08 0.12 5.61 -2.39 -0.01 0.10 16 27 H 0.10 -0.35 6.29 -2.39 -0.02 -0.37 16 28 H 0.06 0.14 8.12 -2.39 -0.02 0.12 16 29 H 0.07 0.51 7.23 -2.38 -0.02 0.49 16 30 H 0.07 0.48 7.90 -2.39 -0.02 0.46 16 31 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.05 0.16 8.14 -2.38 -0.02 0.14 16 33 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.06 0.02 7.02 -2.39 -0.02 0.00 16 35 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 36 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.06 -0.11 6.24 -2.39 -0.01 -0.12 16 39 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.06 0.03 8.14 -2.38 -0.02 0.01 16 41 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.08 0.23 8.10 -2.39 -0.02 0.21 16 43 H 0.18 -0.45 4.88 -2.91 -0.01 -0.46 16 44 H 0.11 -0.88 7.96 -2.39 -0.02 -0.90 16 45 H 0.40 -3.32 8.74 -74.06 -0.65 -3.97 16 46 H -0.30 -1.09 7.11 99.48 0.71 -0.38 16 47 H -0.28 0.11 7.11 99.48 0.71 0.81 16 48 H 0.16 0.02 8.06 -2.91 -0.02 0.00 16 Total: 0.00 -14.69 376.84 0.58 -14.11 By element: Atomic # 1 Polarization: -5.00 SS G_CDS: 0.35 Total: -4.65 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 6.01 Total: 8.09 kcal Atomic # 7 Polarization: -5.41 SS G_CDS: -5.11 Total: -10.51 kcal Atomic # 8 Polarization: -2.24 SS G_CDS: -3.39 Total: -5.63 kcal Atomic # 9 Polarization: -0.91 SS G_CDS: 0.67 Total: -0.24 kcal Atomic # 14 Polarization: -3.21 SS G_CDS: 2.05 Total: -1.16 kcal Total: -14.69 0.58 -14.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15093194_17656566.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.848 kcal (2) G-P(sol) polarization free energy of solvation -14.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds