Wall clock time and date at job start Mon Mar 8 2021 06:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00239 * 2 1 4 4 C 1.38731 * 120.05953 * 180.02562 * 3 2 1 5 5 C 1.38144 * 119.94478 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05509 * 359.97081 * 5 4 3 7 7 C 1.50703 * 119.94269 * 180.02562 * 6 5 4 8 8 H 1.08996 * 112.85169 * 348.80401 * 7 6 5 9 9 C 1.53781 * 113.61417 * 120.00404 * 7 6 5 10 10 C 1.53786 * 87.17350 * 139.93966 * 9 7 6 11 11 H 1.08993 * 113.61491 * 89.15923 * 10 9 7 12 12 N 1.46501 * 113.61366 * 220.06429 * 10 9 7 13 13 C 1.38408 * 119.99918 * 204.99892 * 12 10 9 14 14 N 1.32491 * 119.21239 * 359.73089 * 13 12 10 15 15 C 1.32279 * 120.73473 * 179.71956 * 14 13 12 16 16 C 1.38612 * 119.19630 * 0.54105 * 15 14 13 17 17 C 1.50699 * 120.71592 * 179.71065 * 16 15 14 18 18 O 1.42904 * 109.46683 * 245.01788 * 17 16 15 19 19 Si 1.86292 * 109.47611 * 5.02145 * 17 16 15 20 20 C 1.38596 * 118.56004 * 359.73033 * 16 15 14 21 21 N 1.32281 * 119.19741 * 0.02562 * 20 16 15 22 22 C 1.53782 * 113.61283 * 217.50219 * 7 6 5 23 23 C 1.38264 * 120.11526 * 0.29994 * 6 5 4 24 24 C 1.38150 * 120.05065 * 359.45285 * 23 6 5 25 25 H 1.08997 * 109.46614 * 60.00322 * 1 2 3 26 26 H 1.09005 * 109.46865 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46930 * 299.99869 * 1 2 3 28 28 H 1.08002 * 120.02915 * 0.04374 * 4 3 2 29 29 H 1.07997 * 119.97163 * 180.02562 * 5 4 3 30 30 H 1.09002 * 113.61445 * 254.52965 * 9 7 6 31 31 H 1.09002 * 113.61408 * 25.34696 * 9 7 6 32 32 H 0.97002 * 119.99797 * 24.99368 * 12 10 9 33 33 H 1.07997 * 120.40466 * 180.29601 * 15 14 13 34 34 H 1.09008 * 109.47071 * 125.02479 * 17 16 15 35 35 H 0.96700 * 113.99966 * 180.02562 * 18 17 16 36 36 H 1.48501 * 109.99890 * 299.99787 * 19 17 16 37 37 H 1.48494 * 110.00037 * 61.31948 * 19 17 16 38 38 H 1.07996 * 120.40394 * 180.02562 * 20 16 15 39 39 H 1.08997 * 113.61668 * 334.56418 * 22 7 6 40 40 H 1.08994 * 113.61387 * 105.47152 * 22 7 6 41 41 H 1.07998 * 119.97614 * 179.69969 * 23 6 5 42 42 H 1.08000 * 120.02525 * 180.24520 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6757 0.0005 7 6 3.9861 5.0185 0.0005 8 1 5.0562 4.9483 0.1951 9 6 3.6375 5.8875 -1.2195 10 6 3.5911 7.0860 -0.2569 11 1 4.5529 7.5832 -0.1320 12 7 2.4979 8.0206 -0.5358 13 6 2.6029 9.3445 -0.1459 14 7 3.6967 9.7484 0.4833 15 6 3.8311 11.0080 0.8646 16 6 2.8059 11.9050 0.6083 17 6 2.9201 13.3463 1.0333 18 8 1.9306 13.6304 2.0244 19 14 4.6153 13.6522 1.7427 20 6 1.6735 11.4476 -0.0469 21 7 1.6048 10.1762 -0.4056 22 6 3.2700 6.0747 0.8587 23 6 1.9211 3.6048 0.0066 24 6 1.2915 2.3751 0.0010 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0209 0.3799 -0.0017 29 1 5.1345 2.5750 -0.0008 30 1 4.4395 5.9491 -1.9551 31 1 2.6720 5.6475 -1.6649 32 1 1.7006 7.7116 -0.9938 33 1 4.7269 11.3325 1.3729 34 1 2.7655 13.9932 0.1696 35 1 1.9452 14.5428 2.3446 36 1 4.8384 12.7764 2.9210 37 1 5.6519 13.3910 0.7120 38 1 0.8571 12.1210 -0.2621 39 1 2.2034 5.8870 0.9823 40 1 3.7753 6.2875 1.8007 41 1 1.3342 4.5114 0.0119 42 1 0.2129 2.3202 0.0018 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15100432_12175864.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:11:43 Heat of formation + Delta-G solvation = 53.743639 kcal Electronic energy + Delta-G solvation = -24676.663619 eV Core-core repulsion = 21011.271444 eV Total energy + Delta-G solvation = -3665.392175 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.25724 -41.41781 -40.29461 -38.23559 -37.74923 -35.67427 -34.87842 -32.54659 -32.07359 -31.01699 -28.34140 -26.94251 -26.72844 -26.11773 -25.11132 -23.75115 -23.15123 -22.17171 -20.62533 -19.41139 -19.24886 -18.83528 -18.28791 -17.38804 -16.86446 -16.70355 -16.69160 -16.40786 -16.05360 -15.82548 -15.73795 -15.18052 -15.00751 -14.74766 -14.67792 -14.47082 -14.18380 -14.05211 -13.52558 -13.43702 -13.17565 -13.04093 -12.80354 -12.51540 -12.30568 -12.19163 -12.03644 -11.86599 -11.67992 -11.60836 -11.48138 -11.18664 -10.59710 -10.03320 -10.00533 -9.21326 -9.04255 -4.94797 -0.12444 -0.00263 0.33965 0.37120 1.31876 1.66516 1.73309 1.97186 2.34239 2.61726 2.69279 2.94957 3.41308 3.45324 3.47479 3.56978 3.67475 3.72414 3.84473 3.88654 3.91057 3.96256 4.08545 4.15038 4.23278 4.31373 4.36995 4.45260 4.53091 4.56036 4.64390 4.67334 4.68129 4.70529 4.79199 4.92834 4.98276 5.04752 5.07865 5.24135 5.33647 5.37643 5.63818 5.70353 5.78697 5.89829 6.30320 6.39605 6.96527 7.13279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.104 3.896 4 C -0.166 4.166 5 C -0.079 4.079 6 C -0.110 4.110 7 C -0.056 4.056 8 H 0.113 0.887 9 C -0.127 4.127 10 C 0.136 3.864 11 H 0.110 0.890 12 N -0.677 5.677 13 C 0.551 3.449 14 N -0.579 5.579 15 C 0.176 3.824 16 C -0.254 4.254 17 C -0.054 4.054 18 O -0.566 6.566 19 Si 0.770 3.230 20 C 0.218 3.782 21 N -0.584 5.584 22 C -0.144 4.144 23 C -0.082 4.082 24 C -0.212 4.212 25 H 0.063 0.937 26 H 0.115 0.885 27 H 0.062 0.938 28 H 0.133 0.867 29 H 0.147 0.853 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.420 0.580 33 H 0.161 0.839 34 H 0.103 0.897 35 H 0.405 0.595 36 H -0.296 1.296 37 H -0.287 1.287 38 H 0.195 0.805 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.136 0.864 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.506 4.868 -0.435 4.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.059 3.941 4 C -0.185 4.185 5 C -0.097 4.097 6 C -0.111 4.111 7 C -0.075 4.075 8 H 0.131 0.869 9 C -0.165 4.165 10 C 0.031 3.969 11 H 0.128 0.872 12 N -0.313 5.313 13 C 0.195 3.805 14 N -0.302 5.302 15 C 0.009 3.991 16 C -0.262 4.262 17 C -0.165 4.165 18 O -0.376 6.376 19 Si 0.676 3.324 20 C 0.050 3.950 21 N -0.307 5.307 22 C -0.183 4.183 23 C -0.099 4.099 24 C -0.231 4.231 25 H 0.082 0.918 26 H 0.133 0.867 27 H 0.081 0.919 28 H 0.151 0.849 29 H 0.165 0.835 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.259 0.741 33 H 0.178 0.822 34 H 0.121 0.879 35 H 0.257 0.743 36 H -0.224 1.224 37 H -0.214 1.214 38 H 0.212 0.788 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.154 0.846 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.264 2.595 -0.602 2.677 hybrid contribution -0.799 0.224 -0.081 0.834 sum -0.535 2.819 -0.683 2.949 Atomic orbital electron populations 1.23295 0.76668 1.05412 1.02084 1.86045 1.23277 1.27295 1.88801 1.19333 0.92932 0.84641 0.97190 1.20677 0.91616 0.99475 1.06736 1.21129 1.00913 0.90585 0.97049 1.19689 0.93428 0.94755 1.03191 1.21199 1.00212 0.89358 0.96749 0.86917 1.23443 1.03519 0.92893 0.96620 1.22630 0.90590 0.87056 0.96640 0.87188 1.44290 1.22057 1.03147 1.61813 1.19699 0.85298 0.88062 0.87489 1.67867 1.25405 1.18263 1.18675 1.22873 0.97510 0.87589 0.91154 1.21065 0.98423 0.98488 1.08217 1.24414 1.04270 0.91830 0.95986 1.86441 1.56317 1.36833 1.58005 0.94156 0.72515 0.88357 0.77354 1.23295 0.95650 0.89983 0.86024 1.68049 1.29862 1.05496 1.27248 1.23666 1.01479 0.94994 0.98134 1.20992 0.94368 0.97260 0.97326 1.21440 1.00880 0.92189 1.08585 0.91802 0.86651 0.91934 0.84863 0.83480 0.89626 0.88850 0.74137 0.82208 0.87929 0.74290 1.22364 1.21418 0.78825 0.89452 0.91370 0.84610 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.34 -2.18 10.50 -92.39 -0.97 -3.15 16 3 C 0.10 0.64 6.69 22.51 0.15 0.79 16 4 C -0.17 -0.82 9.99 22.37 0.22 -0.60 16 5 C -0.08 -0.16 9.70 22.25 0.22 0.06 16 6 C -0.11 -0.14 5.29 -19.85 -0.11 -0.24 16 7 C -0.06 0.10 3.98 -11.01 -0.04 0.05 16 8 H 0.11 -0.39 8.09 -2.39 -0.02 -0.41 16 9 C -0.13 0.31 7.29 31.12 0.23 0.54 16 10 C 0.14 0.12 4.26 45.58 0.19 0.31 16 11 H 0.11 0.36 7.37 -2.39 -0.02 0.35 16 12 N -0.68 -2.37 5.51 -327.63 -1.80 -4.17 16 13 C 0.55 4.87 8.42 261.49 2.20 7.08 16 14 N -0.58 -5.77 9.13 -197.98 -1.81 -7.58 16 15 C 0.18 1.32 9.92 84.71 0.84 2.16 16 16 C -0.25 -1.11 5.40 -19.69 -0.11 -1.21 16 17 C -0.05 0.16 2.82 71.24 0.20 0.36 16 18 O -0.57 1.52 12.82 -148.98 -1.91 -0.39 16 19 Si 0.77 -2.94 29.92 68.60 2.05 -0.89 16 20 C 0.22 1.08 10.99 84.71 0.93 2.01 16 21 N -0.58 -5.03 10.46 -197.99 -2.07 -7.10 16 22 C -0.14 -0.02 7.26 31.18 0.23 0.20 16 23 C -0.08 -0.13 8.61 22.26 0.19 0.06 16 24 C -0.21 -0.68 9.04 22.37 0.20 -0.47 16 25 H 0.06 -0.19 7.66 -2.39 -0.02 -0.21 16 26 H 0.12 -0.53 8.14 -2.38 -0.02 -0.55 16 27 H 0.06 -0.18 7.66 -2.39 -0.02 -0.19 16 28 H 0.13 0.44 8.06 -2.91 -0.02 0.42 16 29 H 0.15 -0.36 8.05 -2.91 -0.02 -0.38 16 30 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.09 -0.28 7.70 -2.39 -0.02 -0.30 16 32 H 0.42 0.27 8.84 -92.71 -0.82 -0.55 16 33 H 0.16 0.84 5.04 -2.91 -0.01 0.82 16 34 H 0.10 -0.82 7.96 -2.38 -0.02 -0.84 16 35 H 0.41 -5.37 8.74 -74.06 -0.65 -6.02 16 36 H -0.30 -1.16 7.06 99.48 0.70 -0.45 16 37 H -0.29 -0.51 7.11 99.48 0.71 0.20 16 38 H 0.19 -0.19 8.06 -2.91 -0.02 -0.21 16 39 H 0.09 0.03 6.29 -2.39 -0.02 0.01 16 40 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.14 -0.21 6.63 -2.91 -0.02 -0.23 16 42 H 0.14 -0.06 6.30 -2.91 -0.02 -0.08 16 Total: 0.00 -19.71 348.87 -0.21 -19.92 By element: Atomic # 1 Polarization: -8.44 SS G_CDS: -0.36 Total: -8.81 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 6.66 Total: 12.17 kcal Atomic # 7 Polarization: -13.17 SS G_CDS: -5.68 Total: -18.85 kcal Atomic # 8 Polarization: -0.67 SS G_CDS: -2.88 Total: -3.55 kcal Atomic # 14 Polarization: -2.94 SS G_CDS: 2.05 Total: -0.89 kcal Total: -19.71 -0.21 -19.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15100432_12175864.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.668 kcal (2) G-P(sol) polarization free energy of solvation -19.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds