Wall clock time and date at job start Mon Mar 8 2021 06:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35900 * 116.99302 * 2 1 4 4 C 1.38736 * 120.05255 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94384 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.05811 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.94693 * 179.97438 * 6 5 4 8 8 H 1.08998 * 112.90806 * 11.24653 * 7 6 5 9 9 C 1.53784 * 113.61748 * 142.50037 * 7 6 5 10 10 C 1.53778 * 87.08293 * 139.98200 * 9 7 6 11 11 H 1.09006 * 113.69187 * 89.12519 * 10 9 7 12 12 N 1.46495 * 113.61430 * 220.02210 * 10 9 7 13 13 C 1.39010 * 119.99666 * 252.49580 * 12 10 9 14 14 N 1.32400 * 119.70221 * 179.97438 * 13 12 10 15 15 C 1.31974 * 121.61883 * 179.71013 * 14 13 12 16 16 C 1.38022 * 120.85473 * 0.57282 * 15 14 13 17 17 C 1.50699 * 120.33216 * 179.73480 * 16 15 14 18 18 O 1.42903 * 109.47152 * 244.72624 * 17 16 15 19 19 Si 1.86305 * 109.47184 * 4.72096 * 17 16 15 20 20 C 1.38880 * 119.33082 * 359.46179 * 16 15 14 21 21 C 1.38297 * 118.50318 * 0.24557 * 20 16 15 22 22 C 1.53783 * 87.08391 * 334.57006 * 10 9 7 23 23 C 1.38263 * 120.11176 * 0.25123 * 6 5 4 24 24 C 1.38153 * 120.05217 * 359.45104 * 23 6 5 25 25 H 1.09002 * 109.46950 * 299.99942 * 1 2 3 26 26 H 1.08994 * 109.47372 * 60.00341 * 1 2 3 27 27 H 1.09002 * 109.46591 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.02617 * 0.03667 * 4 3 2 29 29 H 1.08003 * 119.96723 * 179.97438 * 5 4 3 30 30 H 1.08996 * 113.60909 * 25.43245 * 9 7 6 31 31 H 1.09000 * 113.61338 * 254.52715 * 9 7 6 32 32 H 0.96995 * 120.00217 * 72.49750 * 12 10 9 33 33 H 1.08001 * 119.57317 * 180.28849 * 15 14 13 34 34 H 1.08997 * 109.47198 * 124.72302 * 17 16 15 35 35 H 0.96700 * 114.00311 * 180.02562 * 18 17 16 36 36 H 1.48497 * 110.00233 * 300.00062 * 19 17 16 37 37 H 1.48492 * 109.99800 * 61.32455 * 19 17 16 38 38 H 1.07997 * 120.74322 * 180.27212 * 20 16 15 39 39 H 1.08004 * 120.44831 * 180.02562 * 21 20 16 40 40 H 1.08996 * 113.61712 * 139.98080 * 22 10 9 41 41 H 1.09002 * 113.61330 * 270.80374 * 22 10 9 42 42 H 1.08001 * 119.97443 * 179.70735 * 23 6 5 43 43 H 1.08003 * 120.02833 * 180.30058 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2850 -0.0005 5 6 4.0559 2.5171 0.0000 6 6 3.3018 3.6759 0.0016 7 6 3.9858 5.0187 0.0028 8 1 5.0557 4.9499 -0.1936 9 6 3.2690 6.0760 -0.8535 10 6 3.5925 7.0845 0.2614 11 1 4.5547 7.5813 0.1369 12 7 2.5008 8.0205 0.5410 13 6 2.6077 9.3499 0.1491 14 7 1.6173 10.1907 0.4043 15 6 1.6812 11.4616 0.0544 16 6 2.7866 11.9595 -0.6054 17 6 2.8445 13.4114 -1.0047 18 8 2.8685 13.5129 -2.4300 19 14 1.3445 14.2975 -0.3444 20 6 3.8473 11.1102 -0.8923 21 6 3.7543 9.7850 -0.5080 22 6 3.6382 5.8861 1.2242 23 6 1.9210 3.6049 0.0079 24 6 1.2914 2.3751 0.0012 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 4.0208 0.3801 -0.0016 29 1 5.1344 2.5752 0.0000 30 1 2.2024 5.8883 -0.9764 31 1 3.7736 6.2901 -1.7957 32 1 1.7035 7.7126 0.9996 33 1 0.8558 12.1196 0.2831 34 1 3.7455 13.8659 -0.5929 35 1 2.9062 14.4213 -2.7591 36 1 0.1093 13.6873 -0.8985 37 1 1.3249 14.2267 1.1387 38 1 4.7251 11.4766 -1.4037 39 1 4.5608 9.0972 -0.7150 40 1 4.4408 5.9469 1.9592 41 1 2.6728 5.6474 1.6703 42 1 1.3340 4.5114 0.0139 43 1 0.2128 2.3201 0.0012 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15100432_13915762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:11:47 Heat of formation + Delta-G solvation = 36.599269 kcal Electronic energy + Delta-G solvation = -24522.421242 eV Core-core repulsion = 20921.711543 eV Total energy + Delta-G solvation = -3600.709700 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.72858 -41.25416 -40.22461 -38.20850 -37.66562 -35.48692 -33.56852 -32.09032 -31.80821 -30.79114 -28.33127 -26.73616 -26.68402 -25.19139 -24.90779 -23.72936 -22.78524 -21.89141 -20.44252 -19.23598 -18.82521 -18.44954 -18.11529 -17.35049 -16.82022 -16.71107 -16.61808 -16.22941 -15.77620 -15.66499 -15.42930 -15.12304 -14.87066 -14.65923 -14.43509 -14.31053 -14.08177 -13.92124 -13.86731 -13.45772 -13.38103 -13.00704 -12.78599 -12.52493 -12.30322 -12.15884 -12.04504 -11.65149 -11.59599 -11.43928 -11.06957 -10.85900 -10.70188 -10.18176 -10.00311 -9.07180 -8.76279 -4.96076 0.06257 0.30126 0.34155 0.37972 1.32782 1.64326 1.97967 2.04098 2.33935 2.65791 2.70572 3.35597 3.48534 3.51190 3.65637 3.68623 3.78754 3.83641 3.91417 3.92338 3.98216 4.05474 4.13802 4.21899 4.28811 4.29714 4.37423 4.42025 4.47114 4.57655 4.65708 4.66135 4.70287 4.74242 4.80866 4.90082 4.97841 5.02366 5.08700 5.14831 5.23521 5.32167 5.36876 5.46247 5.69044 5.79687 5.97144 6.39097 6.44140 6.95479 7.01659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.103 3.897 4 C -0.167 4.167 5 C -0.078 4.078 6 C -0.110 4.110 7 C -0.058 4.058 8 H 0.120 0.880 9 C -0.148 4.148 10 C 0.130 3.870 11 H 0.125 0.875 12 N -0.708 5.708 13 C 0.393 3.607 14 N -0.572 5.572 15 C 0.125 3.875 16 C -0.203 4.203 17 C -0.058 4.058 18 O -0.565 6.565 19 Si 0.767 3.233 20 C -0.009 4.009 21 C -0.236 4.236 22 C -0.130 4.130 23 C -0.083 4.083 24 C -0.215 4.215 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.115 0.885 28 H 0.134 0.866 29 H 0.151 0.849 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.405 0.595 33 H 0.139 0.861 34 H 0.097 0.903 35 H 0.403 0.597 36 H -0.300 1.300 37 H -0.291 1.291 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.133 0.867 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.454 2.829 -0.825 4.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.058 3.942 4 C -0.185 4.185 5 C -0.096 4.096 6 C -0.111 4.111 7 C -0.076 4.076 8 H 0.138 0.862 9 C -0.187 4.187 10 C 0.025 3.975 11 H 0.143 0.857 12 N -0.338 5.338 13 C 0.157 3.843 14 N -0.290 5.290 15 C -0.032 4.032 16 C -0.209 4.209 17 C -0.169 4.169 18 O -0.375 6.375 19 Si 0.675 3.325 20 C -0.034 4.034 21 C -0.260 4.260 22 C -0.169 4.169 23 C -0.101 4.101 24 C -0.233 4.233 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.134 0.866 28 H 0.152 0.848 29 H 0.168 0.832 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.241 0.759 33 H 0.155 0.845 34 H 0.115 0.885 35 H 0.254 0.746 36 H -0.229 1.229 37 H -0.219 1.219 38 H 0.177 0.823 39 H 0.179 0.821 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.151 0.849 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.200 1.506 0.066 2.666 hybrid contribution -0.147 -0.447 -0.076 0.476 sum 2.052 1.059 -0.010 2.310 Atomic orbital electron populations 1.23285 0.76736 1.05393 1.02010 1.86046 1.23213 1.27334 1.88828 1.19344 0.93011 0.84567 0.97295 1.20701 0.91511 0.99624 1.06700 1.21155 1.01012 0.90477 0.96916 1.19739 0.93258 0.95122 1.02950 1.21264 1.00483 0.89128 0.96752 0.86221 1.23686 1.01406 0.95073 0.98490 1.22753 0.90838 0.87343 0.96588 0.85740 1.44679 1.21780 1.04356 1.63023 1.18737 0.89458 0.86341 0.89798 1.67066 1.30608 1.04441 1.26871 1.22120 0.96048 0.90736 0.94266 1.20353 0.96906 0.97493 1.06122 1.24484 1.11349 0.94750 0.86326 1.86443 1.97627 1.34895 1.18540 0.94524 0.74279 0.87127 0.76596 1.21511 0.97726 0.91859 0.92336 1.21793 0.99690 0.97976 1.06545 1.23432 1.03218 0.93417 0.96796 1.20985 0.94599 0.97069 0.97458 1.21430 1.00791 0.92343 1.08761 0.91936 0.91973 0.86626 0.84845 0.83165 0.90092 0.90238 0.75948 0.84470 0.88499 0.74579 1.22854 1.21873 0.82302 0.82136 0.89414 0.89772 0.84928 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.34 -2.17 10.50 -92.43 -0.97 -3.14 16 3 C 0.10 0.61 6.69 22.51 0.15 0.76 16 4 C -0.17 -0.70 9.99 22.37 0.22 -0.48 16 5 C -0.08 -0.05 9.70 22.25 0.22 0.17 16 6 C -0.11 0.01 5.29 -19.86 -0.11 -0.10 16 7 C -0.06 0.26 3.98 -11.01 -0.04 0.22 16 8 H 0.12 -0.91 8.09 -2.39 -0.02 -0.93 16 9 C -0.15 0.52 7.25 31.12 0.23 0.75 16 10 C 0.13 -0.50 4.03 45.52 0.18 -0.32 16 11 H 0.12 -0.80 6.10 -2.38 -0.01 -0.81 16 12 N -0.71 -1.04 5.53 -322.05 -1.78 -2.82 16 13 C 0.39 2.63 7.65 133.06 1.02 3.65 16 14 N -0.57 -6.69 10.39 -193.26 -2.01 -8.70 16 15 C 0.12 1.29 9.84 84.62 0.83 2.12 16 16 C -0.20 -1.25 5.39 -19.76 -0.11 -1.36 16 17 C -0.06 0.01 2.81 71.24 0.20 0.21 16 18 O -0.57 0.18 12.82 -148.98 -1.91 -1.73 16 19 Si 0.77 -0.54 29.87 68.60 2.05 1.51 16 20 C -0.01 -0.03 9.84 22.44 0.22 0.19 16 21 C -0.24 -0.70 9.29 22.50 0.21 -0.49 16 22 C -0.13 0.62 7.29 31.12 0.23 0.85 16 23 C -0.08 -0.11 8.59 22.26 0.19 0.08 16 24 C -0.21 -0.70 9.04 22.37 0.20 -0.50 16 25 H 0.06 -0.17 7.66 -2.39 -0.02 -0.18 16 26 H 0.06 -0.16 7.66 -2.39 -0.02 -0.18 16 27 H 0.12 -0.52 8.14 -2.39 -0.02 -0.54 16 28 H 0.13 0.34 8.06 -2.91 -0.02 0.32 16 29 H 0.15 -0.65 8.05 -2.91 -0.02 -0.67 16 30 H 0.08 -0.11 6.32 -2.39 -0.02 -0.13 16 31 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.40 0.57 8.85 -92.71 -0.82 -0.25 16 33 H 0.14 1.34 4.87 -2.91 -0.01 1.33 16 34 H 0.10 -0.49 7.96 -2.39 -0.02 -0.51 16 35 H 0.40 -4.43 8.74 -74.06 -0.65 -5.07 16 36 H -0.30 -2.26 7.06 99.48 0.70 -1.56 16 37 H -0.29 -1.53 7.11 99.48 0.71 -0.83 16 38 H 0.16 -0.25 8.06 -2.91 -0.02 -0.28 16 39 H 0.16 -0.49 6.03 -2.91 -0.02 -0.50 16 40 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.08 -0.28 7.69 -2.39 -0.02 -0.30 16 42 H 0.13 -0.17 6.67 -2.91 -0.02 -0.19 16 43 H 0.14 0.01 6.30 -2.91 -0.02 -0.01 16 Total: 0.00 -20.12 351.29 -0.04 -20.17 By element: Atomic # 1 Polarization: -11.76 SS G_CDS: -0.38 Total: -12.14 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 4.96 Total: 6.84 kcal Atomic # 7 Polarization: -7.73 SS G_CDS: -3.79 Total: -11.51 kcal Atomic # 8 Polarization: -1.99 SS G_CDS: -2.88 Total: -4.87 kcal Atomic # 14 Polarization: -0.54 SS G_CDS: 2.05 Total: 1.51 kcal Total: -20.12 -0.04 -20.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15100432_13915762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.767 kcal (2) G-P(sol) polarization free energy of solvation -20.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds