Wall clock time and date at job start Mon Mar 8 2021 06:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00346 * 2 1 4 4 C 1.38730 * 120.05559 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.94323 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05983 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94708 * 180.02562 * 6 5 4 8 8 H 1.08999 * 112.84856 * 11.20138 * 7 6 5 9 9 C 1.53954 * 113.73916 * 142.40089 * 7 6 5 10 10 C 1.53789 * 87.01747 * 139.94644 * 9 7 6 11 11 H 1.08998 * 113.61798 * 89.23029 * 10 9 7 12 12 N 1.46506 * 113.61209 * 220.05156 * 10 9 7 13 13 C 1.38613 * 119.99612 * 254.13039 * 12 10 9 14 14 N 1.29688 * 124.94885 * 359.97438 * 13 12 10 15 15 C 1.32123 * 116.86649 * 180.02562 * 14 13 12 16 16 C 1.33323 * 114.57621 * 0.02562 * 15 14 13 17 17 C 1.50707 * 125.95082 * 179.97438 * 16 15 14 18 18 O 1.42903 * 109.46442 * 65.00428 * 17 16 15 19 19 Si 1.86293 * 109.47256 * 184.99995 * 17 16 15 20 20 S 1.70962 * 124.95125 * 180.33188 * 13 12 10 21 21 C 1.53780 * 113.61495 * 239.99831 * 7 6 5 22 22 C 1.38270 * 120.10866 * 0.27729 * 6 5 4 23 23 C 1.38149 * 120.05329 * 359.45023 * 22 6 5 24 24 H 1.09003 * 109.47611 * 300.00614 * 1 2 3 25 25 H 1.08997 * 109.46779 * 60.00311 * 1 2 3 26 26 H 1.08998 * 109.47491 * 180.02562 * 1 2 3 27 27 H 1.08008 * 120.02950 * 359.94429 * 4 3 2 28 28 H 1.08004 * 119.97025 * 180.02562 * 5 4 3 29 29 H 1.08999 * 113.61428 * 25.42833 * 9 7 6 30 30 H 1.08998 * 113.66838 * 254.46563 * 9 7 6 31 31 H 0.96999 * 120.00266 * 74.13405 * 12 10 9 32 32 H 1.07999 * 122.70914 * 180.02562 * 15 14 13 33 33 H 1.08999 * 109.47345 * 305.00498 * 17 16 15 34 34 H 0.96700 * 114.00311 * 60.00230 * 18 17 16 35 35 H 1.48506 * 109.99973 * 180.02562 * 19 17 16 36 36 H 1.48493 * 110.00375 * 301.32185 * 19 17 16 37 37 H 1.09003 * 113.61187 * 105.38820 * 21 7 6 38 38 H 1.08999 * 113.61576 * 334.48414 * 21 7 6 39 39 H 1.07993 * 119.97167 * 179.73133 * 22 6 5 40 40 H 1.08003 * 120.02647 * 180.27709 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 -0.0005 5 6 4.0561 2.5167 -0.0011 6 6 3.3021 3.6756 -0.0016 7 6 3.9864 5.0183 -0.0028 8 1 5.0564 4.9479 -0.1982 9 6 3.2726 6.0769 -0.8631 10 6 3.5955 7.0849 0.2526 11 1 4.5584 7.5805 0.1281 12 7 2.5047 8.0228 0.5298 13 6 2.5997 9.3402 0.1093 14 7 3.6067 9.8438 -0.5342 15 6 3.5295 11.1225 -0.8575 16 6 2.4060 11.7259 -0.4688 17 6 2.0524 13.1724 -0.7013 18 8 1.9089 13.4080 -2.1035 19 14 0.4491 13.5662 0.1618 20 16 1.4101 10.5399 0.3708 21 6 3.6388 5.8879 1.2170 22 6 1.9212 3.6047 0.0042 23 6 1.2916 2.3751 -0.0010 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 4.0209 0.3797 0.0000 28 1 5.1346 2.5747 -0.0019 29 1 2.2059 5.8910 -0.9882 30 1 3.7795 6.2902 -1.8042 31 1 1.7160 7.7219 1.0077 32 1 4.3132 11.6373 -1.3935 33 1 2.8441 13.8082 -0.3051 34 1 1.2202 12.8748 -2.5235 35 1 0.0891 14.9897 -0.0604 36 1 -0.6317 12.6841 -0.3469 37 1 4.4408 5.9487 1.9527 38 1 2.6723 5.6502 1.6615 39 1 1.3345 4.5113 0.0081 40 1 0.2130 2.3202 -0.0010 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15100432_15704118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:11:51 Heat of formation + Delta-G solvation = 37.853810 kcal Electronic energy + Delta-G solvation = -23076.130855 eV Core-core repulsion = 19564.627803 eV Total energy + Delta-G solvation = -3511.503052 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.52261 -40.76279 -40.08567 -38.20916 -37.78351 -35.31433 -32.06826 -31.58445 -30.86371 -28.40612 -26.90240 -26.71942 -25.67100 -24.33841 -23.69580 -22.47239 -20.79410 -20.67883 -19.44768 -19.17106 -18.28543 -17.39612 -17.10006 -16.82567 -16.69088 -16.45296 -16.02535 -15.95715 -15.72287 -15.44923 -15.09173 -14.78187 -14.68857 -14.41083 -14.16446 -13.84698 -13.58574 -13.39457 -13.11334 -12.90169 -12.84220 -12.46484 -12.35971 -12.23248 -11.98045 -11.68926 -11.64964 -11.47042 -11.05862 -10.86929 -10.22376 -10.17720 -9.96863 -9.02761 -8.71363 -5.04263 -0.00939 0.05692 0.37505 0.42266 0.71117 1.26061 1.55863 1.91191 2.05106 2.14898 2.32062 2.72459 3.35974 3.39443 3.57314 3.62674 3.74905 3.82469 3.88074 3.92799 3.96421 4.08731 4.14704 4.17966 4.35654 4.44149 4.51045 4.54834 4.58721 4.60899 4.65818 4.75073 4.76724 4.90548 4.95401 5.01727 5.07344 5.25761 5.35247 5.39619 5.67707 5.78772 5.87359 6.06265 6.36952 6.42429 7.03014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.124 3.876 4 C -0.149 4.149 5 C -0.074 4.074 6 C -0.107 4.107 7 C -0.064 4.064 8 H 0.103 0.897 9 C -0.146 4.146 10 C 0.139 3.861 11 H 0.119 0.881 12 N -0.682 5.682 13 C 0.327 3.673 14 N -0.551 5.551 15 C 0.121 3.879 16 C -0.306 4.306 17 C -0.017 4.017 18 O -0.526 6.526 19 Si 0.653 3.347 20 S 0.083 5.917 21 C -0.137 4.137 22 C -0.076 4.076 23 C -0.206 4.206 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.101 0.899 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.413 0.587 32 H 0.176 0.824 33 H 0.125 0.875 34 H 0.376 0.624 35 H -0.238 1.238 36 H -0.244 1.244 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.123 0.877 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.107 -1.551 2.964 3.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.079 3.921 4 C -0.168 4.168 5 C -0.092 4.092 6 C -0.107 4.107 7 C -0.083 4.083 8 H 0.121 0.879 9 C -0.186 4.186 10 C 0.032 3.968 11 H 0.137 0.863 12 N -0.320 5.320 13 C -0.043 4.043 14 N -0.276 5.276 15 C -0.031 4.031 16 C -0.428 4.428 17 C -0.130 4.130 18 O -0.333 6.333 19 Si 0.553 3.447 20 S 0.333 5.667 21 C -0.176 4.176 22 C -0.094 4.094 23 C -0.225 4.225 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.120 0.880 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.251 0.749 32 H 0.193 0.807 33 H 0.143 0.857 34 H 0.224 0.776 35 H -0.161 1.161 36 H -0.168 1.168 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.141 0.859 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.777 -1.465 3.321 4.570 hybrid contribution -0.052 -0.100 -1.393 1.398 sum -2.829 -1.565 1.927 3.764 Atomic orbital electron populations 1.23082 0.78138 1.04218 1.01379 1.86085 1.21578 1.26909 1.88585 1.19085 0.92451 0.84243 0.96356 1.20470 0.91429 0.98821 1.06049 1.20889 0.99927 0.90914 0.97494 1.19515 0.93301 0.94312 1.03611 1.21252 0.99937 0.90231 0.96856 0.87895 1.23699 1.01442 0.94835 0.98585 1.22625 0.91320 0.87080 0.95779 0.86328 1.44128 1.22351 1.04101 1.61443 1.23783 0.93482 0.91437 0.95610 1.66477 1.26518 1.13157 1.21424 1.21341 0.96644 0.87855 0.97224 1.25493 1.00355 1.01553 1.15439 1.24071 1.11363 0.91139 0.86463 1.86617 1.59931 1.66857 1.19880 0.95173 0.76178 0.82959 0.90433 1.84026 1.22583 1.02260 1.57853 1.23498 1.03034 0.94147 0.96896 1.20750 0.94000 0.96878 0.97820 1.21234 1.00098 0.92333 1.08785 0.92582 0.92581 0.88034 0.85080 0.85197 0.89480 0.90520 0.74904 0.80737 0.85712 0.77593 1.16134 1.16766 0.90123 0.89362 0.85944 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 9.81 101.05 0.99 0.96 16 2 O -0.32 -0.71 10.50 -19.42 -0.20 -0.92 16 3 C 0.12 0.25 6.69 -39.22 -0.26 -0.01 16 4 C -0.15 -0.22 9.99 -39.44 -0.39 -0.62 16 5 C -0.07 -0.02 9.70 -39.61 -0.38 -0.41 16 6 C -0.11 0.01 5.29 -104.60 -0.55 -0.54 16 7 C -0.06 0.10 3.97 -90.87 -0.36 -0.26 16 8 H 0.10 -0.22 8.09 -51.93 -0.42 -0.64 16 9 C -0.15 0.18 7.27 -25.82 -0.19 -0.01 16 10 C 0.14 -0.17 4.34 -67.11 -0.29 -0.46 16 11 H 0.12 0.02 7.70 -51.93 -0.40 -0.38 16 12 N -0.68 0.73 5.52 -54.98 -0.30 0.43 16 13 C 0.33 0.37 8.09 -87.68 -0.71 -0.34 16 14 N -0.55 -1.55 9.85 -15.21 -0.15 -1.70 16 15 C 0.12 0.23 11.24 -19.14 -0.22 0.01 16 16 C -0.31 -0.23 5.73 -36.02 -0.21 -0.44 16 17 C -0.02 0.00 2.99 36.01 0.11 0.11 16 18 O -0.53 -0.68 12.88 -35.23 -0.45 -1.13 16 19 Si 0.65 -0.36 31.06 -169.99 -5.28 -5.64 16 20 S 0.08 0.00 20.59 -107.50 -2.21 -2.21 16 21 C -0.14 0.32 7.29 -25.92 -0.19 0.13 16 22 C -0.08 0.01 8.59 -39.60 -0.34 -0.33 16 23 C -0.21 -0.14 9.04 -39.43 -0.36 -0.49 16 24 H 0.06 -0.12 7.66 -51.93 -0.40 -0.52 16 25 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16 26 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 27 H 0.13 0.07 8.06 -52.48 -0.42 -0.35 16 28 H 0.13 -0.20 8.05 -52.48 -0.42 -0.63 16 29 H 0.09 -0.11 6.34 -51.93 -0.33 -0.44 16 30 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 31 H 0.41 -1.30 8.84 -40.82 -0.36 -1.66 16 32 H 0.18 0.13 8.06 -52.49 -0.42 -0.30 16 33 H 0.13 -0.13 7.96 -51.93 -0.41 -0.54 16 34 H 0.38 -0.49 8.70 45.56 0.40 -0.09 16 35 H -0.24 -0.51 7.11 56.52 0.40 -0.11 16 36 H -0.24 -0.32 7.11 56.52 0.40 0.09 16 37 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 38 H 0.09 -0.24 7.68 -51.93 -0.40 -0.64 16 39 H 0.12 -0.22 6.68 -52.49 -0.35 -0.58 16 40 H 0.13 -0.13 6.30 -52.48 -0.33 -0.46 16 LS Contribution 346.84 15.07 5.23 5.23 Total: 0.00 -6.29 346.84 -11.87 -18.16 By element: Atomic # 1 Polarization: -4.37 SS G_CDS: -5.14 Total: -9.50 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -3.35 Total: -2.70 kcal Atomic # 7 Polarization: -0.82 SS G_CDS: -0.45 Total: -1.28 kcal Atomic # 8 Polarization: -1.39 SS G_CDS: -0.66 Total: -2.05 kcal Atomic # 14 Polarization: -0.36 SS G_CDS: -5.28 Total: -5.64 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.21 Total: -2.21 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -6.29 -11.87 -18.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15100432_15704118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.009 kcal (2) G-P(sol) polarization free energy of solvation -6.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds