Wall clock time and date at job start Mon Mar 8 2021 06:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00346 * 2 1 4 4 C 1.38730 * 120.05559 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.94323 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05983 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94708 * 180.02562 * 6 5 4 8 8 H 1.08999 * 112.84856 * 11.20138 * 7 6 5 9 9 C 1.53954 * 113.73916 * 142.40089 * 7 6 5 10 10 C 1.53789 * 87.01747 * 139.94644 * 9 7 6 11 11 H 1.08998 * 113.61798 * 89.23029 * 10 9 7 12 12 N 1.46506 * 113.61209 * 220.05156 * 10 9 7 13 13 C 1.38613 * 119.99612 * 254.13039 * 12 10 9 14 14 N 1.29688 * 124.94885 * 359.97438 * 13 12 10 15 15 C 1.32123 * 116.86649 * 180.02562 * 14 13 12 16 16 C 1.33323 * 114.57621 * 0.02562 * 15 14 13 17 17 C 1.50707 * 125.95082 * 179.97438 * 16 15 14 18 18 O 1.42903 * 109.46442 * 65.00428 * 17 16 15 19 19 Si 1.86293 * 109.47256 * 184.99995 * 17 16 15 20 20 S 1.70962 * 124.95125 * 180.33188 * 13 12 10 21 21 C 1.53780 * 113.61495 * 239.99831 * 7 6 5 22 22 C 1.38270 * 120.10866 * 0.27729 * 6 5 4 23 23 C 1.38149 * 120.05329 * 359.45023 * 22 6 5 24 24 H 1.09003 * 109.47611 * 300.00614 * 1 2 3 25 25 H 1.08997 * 109.46779 * 60.00311 * 1 2 3 26 26 H 1.08998 * 109.47491 * 180.02562 * 1 2 3 27 27 H 1.08008 * 120.02950 * 359.94429 * 4 3 2 28 28 H 1.08004 * 119.97025 * 180.02562 * 5 4 3 29 29 H 1.08999 * 113.61428 * 25.42833 * 9 7 6 30 30 H 1.08998 * 113.66838 * 254.46563 * 9 7 6 31 31 H 0.96999 * 120.00266 * 74.13405 * 12 10 9 32 32 H 1.07999 * 122.70914 * 180.02562 * 15 14 13 33 33 H 1.08999 * 109.47345 * 305.00498 * 17 16 15 34 34 H 0.96700 * 114.00311 * 60.00230 * 18 17 16 35 35 H 1.48506 * 109.99973 * 180.02562 * 19 17 16 36 36 H 1.48493 * 110.00375 * 301.32185 * 19 17 16 37 37 H 1.09003 * 113.61187 * 105.38820 * 21 7 6 38 38 H 1.08999 * 113.61576 * 334.48414 * 21 7 6 39 39 H 1.07993 * 119.97167 * 179.73133 * 22 6 5 40 40 H 1.08003 * 120.02647 * 180.27709 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 -0.0005 5 6 4.0561 2.5167 -0.0011 6 6 3.3021 3.6756 -0.0016 7 6 3.9864 5.0183 -0.0028 8 1 5.0564 4.9479 -0.1982 9 6 3.2726 6.0769 -0.8631 10 6 3.5955 7.0849 0.2526 11 1 4.5584 7.5805 0.1281 12 7 2.5047 8.0228 0.5298 13 6 2.5997 9.3402 0.1093 14 7 3.6067 9.8438 -0.5342 15 6 3.5295 11.1225 -0.8575 16 6 2.4060 11.7259 -0.4688 17 6 2.0524 13.1724 -0.7013 18 8 1.9089 13.4080 -2.1035 19 14 0.4491 13.5662 0.1618 20 16 1.4101 10.5399 0.3708 21 6 3.6388 5.8879 1.2170 22 6 1.9212 3.6047 0.0042 23 6 1.2916 2.3751 -0.0010 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 4.0209 0.3797 0.0000 28 1 5.1346 2.5747 -0.0019 29 1 2.2059 5.8910 -0.9882 30 1 3.7795 6.2902 -1.8042 31 1 1.7160 7.7219 1.0077 32 1 4.3132 11.6373 -1.3935 33 1 2.8441 13.8082 -0.3051 34 1 1.2202 12.8748 -2.5235 35 1 0.0891 14.9897 -0.0604 36 1 -0.6317 12.6841 -0.3469 37 1 4.4408 5.9487 1.9527 38 1 2.6723 5.6502 1.6615 39 1 1.3345 4.5113 0.0081 40 1 0.2130 2.3202 -0.0010 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15100432_15704118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:11:51 Heat of formation + Delta-G solvation = 42.421643 kcal Electronic energy + Delta-G solvation = -23075.932779 eV Core-core repulsion = 19564.627803 eV Total energy + Delta-G solvation = -3511.304976 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.48133 -40.78637 -40.07171 -38.21580 -37.80114 -35.28295 -32.05158 -31.59453 -30.86471 -28.31889 -26.88261 -26.62098 -25.65565 -24.34223 -23.67527 -22.45374 -20.76796 -20.66189 -19.42086 -19.16459 -18.31072 -17.37009 -17.07412 -16.81175 -16.67431 -16.46213 -15.99609 -15.96752 -15.68987 -15.46120 -15.09633 -14.78326 -14.63969 -14.38921 -14.10953 -13.92737 -13.44479 -13.33127 -13.02561 -12.92087 -12.77230 -12.47672 -12.38346 -12.15999 -11.99707 -11.62677 -11.58056 -11.40509 -11.03111 -10.88437 -10.27621 -10.20505 -9.96896 -9.03658 -8.70371 -5.02191 -0.04807 0.04313 0.37633 0.41083 0.67950 1.26477 1.54781 1.88922 1.97994 2.22148 2.37410 2.72682 3.39830 3.50253 3.61773 3.72988 3.79263 3.88583 3.94316 3.96131 4.02063 4.18200 4.26090 4.33927 4.41035 4.49426 4.58001 4.61894 4.69791 4.71899 4.73961 4.76632 4.85255 4.98539 5.02280 5.06584 5.12500 5.27622 5.37440 5.42376 5.70412 5.82619 5.90506 6.18495 6.43076 6.44198 7.02908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.103 3.897 4 C -0.168 4.168 5 C -0.081 4.081 6 C -0.109 4.109 7 C -0.060 4.060 8 H 0.108 0.892 9 C -0.143 4.143 10 C 0.140 3.860 11 H 0.104 0.896 12 N -0.674 5.674 13 C 0.317 3.683 14 N -0.578 5.578 15 C 0.105 3.895 16 C -0.307 4.307 17 C -0.023 4.023 18 O -0.543 6.543 19 Si 0.723 3.277 20 S 0.109 5.891 21 C -0.126 4.126 22 C -0.080 4.080 23 C -0.212 4.212 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.114 0.886 27 H 0.131 0.869 28 H 0.145 0.855 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.424 0.576 32 H 0.178 0.822 33 H 0.135 0.865 34 H 0.385 0.615 35 H -0.276 1.276 36 H -0.265 1.265 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.141 0.859 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.700 -1.358 3.610 4.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.058 3.942 4 C -0.186 4.186 5 C -0.099 4.099 6 C -0.110 4.110 7 C -0.079 4.079 8 H 0.126 0.874 9 C -0.182 4.182 10 C 0.033 3.967 11 H 0.122 0.878 12 N -0.313 5.313 13 C -0.054 4.054 14 N -0.305 5.305 15 C -0.046 4.046 16 C -0.430 4.430 17 C -0.135 4.135 18 O -0.351 6.351 19 Si 0.626 3.374 20 S 0.359 5.641 21 C -0.164 4.164 22 C -0.098 4.098 23 C -0.231 4.231 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.132 0.868 27 H 0.149 0.851 28 H 0.163 0.837 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.264 0.736 32 H 0.195 0.805 33 H 0.153 0.847 34 H 0.235 0.765 35 H -0.202 1.202 36 H -0.191 1.191 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.159 0.841 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.373 -1.299 3.978 5.375 hybrid contribution 0.101 -0.152 -1.624 1.635 sum -3.272 -1.451 2.353 4.284 Atomic orbital electron populations 1.23289 0.76669 1.05358 1.02125 1.86045 1.23284 1.27402 1.88829 1.19339 0.92901 0.84704 0.97288 1.20665 0.91683 0.99440 1.06862 1.21124 1.00862 0.90702 0.97181 1.19704 0.93507 0.94714 1.03031 1.21241 1.00075 0.89408 0.97153 0.87390 1.23667 1.01552 0.94951 0.98078 1.22538 0.90706 0.87101 0.96358 0.87819 1.44177 1.22759 1.03387 1.60961 1.23999 0.93579 0.92290 0.95483 1.66474 1.27675 1.13744 1.22571 1.21466 0.97313 0.87938 0.97877 1.25596 1.00233 1.01940 1.15205 1.24276 1.12256 0.90953 0.86053 1.86590 1.60598 1.67321 1.20626 0.94365 0.74270 0.79475 0.89329 1.83875 1.21576 1.01373 1.57313 1.23440 1.03656 0.92834 0.96473 1.21005 0.94251 0.97310 0.97192 1.21452 1.00892 0.92188 1.08534 0.91716 0.91893 0.86798 0.85112 0.83721 0.89101 0.91685 0.73638 0.80501 0.84750 0.76525 1.20165 1.19107 0.89732 0.88437 0.84139 0.84088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.34 -1.83 10.50 -92.40 -0.97 -2.80 16 3 C 0.10 0.49 6.69 22.50 0.15 0.65 16 4 C -0.17 -0.66 9.99 22.36 0.22 -0.43 16 5 C -0.08 -0.06 9.70 22.25 0.22 0.15 16 6 C -0.11 0.08 5.29 -19.85 -0.11 -0.03 16 7 C -0.06 0.23 3.97 -10.96 -0.04 0.19 16 8 H 0.11 -0.51 8.09 -2.39 -0.02 -0.53 16 9 C -0.14 0.40 7.27 31.18 0.23 0.63 16 10 C 0.14 -0.40 4.34 45.52 0.20 -0.20 16 11 H 0.10 0.08 7.70 -2.39 -0.02 0.06 16 12 N -0.67 1.89 5.52 -327.87 -1.81 0.08 16 13 C 0.32 0.63 8.09 179.32 1.45 2.08 16 14 N -0.58 -3.48 9.85 -202.03 -1.99 -5.47 16 15 C 0.10 0.44 11.24 83.54 0.94 1.38 16 16 C -0.31 -0.43 5.73 24.58 0.14 -0.29 16 17 C -0.02 0.01 2.99 71.24 0.21 0.22 16 18 O -0.54 -1.43 12.88 -148.98 -1.92 -3.35 16 19 Si 0.72 -0.96 31.06 68.60 2.13 1.17 16 20 S 0.11 -0.07 20.59 -56.49 -1.16 -1.23 16 21 C -0.13 0.71 7.29 31.12 0.23 0.94 16 22 C -0.08 0.07 8.59 22.26 0.19 0.27 16 23 C -0.21 -0.25 9.04 22.37 0.20 -0.05 16 24 H 0.06 -0.29 7.66 -2.39 -0.02 -0.31 16 25 H 0.06 -0.26 7.66 -2.39 -0.02 -0.28 16 26 H 0.11 -0.63 8.14 -2.39 -0.02 -0.65 16 27 H 0.13 0.35 8.06 -2.91 -0.02 0.33 16 28 H 0.15 -0.46 8.05 -2.91 -0.02 -0.49 16 29 H 0.09 -0.32 6.34 -2.39 -0.02 -0.33 16 30 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.42 -3.20 8.84 -92.71 -0.82 -4.02 16 32 H 0.18 0.42 8.06 -2.91 -0.02 0.39 16 33 H 0.13 -0.33 7.96 -2.39 -0.02 -0.35 16 34 H 0.39 -0.95 8.70 -74.06 -0.64 -1.60 16 35 H -0.28 -1.36 7.11 99.48 0.71 -0.66 16 36 H -0.27 -0.60 7.11 99.48 0.71 0.11 16 37 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 38 H 0.10 -0.70 7.68 -2.39 -0.02 -0.72 16 39 H 0.14 -0.73 6.68 -2.91 -0.02 -0.75 16 40 H 0.14 -0.37 6.30 -2.91 -0.02 -0.39 16 Total: 0.00 -15.03 346.84 -0.72 -15.76 By element: Atomic # 1 Polarization: -10.38 SS G_CDS: -0.34 Total: -10.73 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 5.34 Total: 6.56 kcal Atomic # 7 Polarization: -1.59 SS G_CDS: -3.80 Total: -5.39 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: -2.89 Total: -6.14 kcal Atomic # 14 Polarization: -0.96 SS G_CDS: 2.13 Total: 1.17 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -1.16 Total: -1.23 kcal Total: -15.03 -0.72 -15.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15100432_15704118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.178 kcal (2) G-P(sol) polarization free energy of solvation -15.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds