Wall clock time and date at job start Mon Mar 8 2021 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 117.00336 * 2 1 4 4 C 1.38735 * 120.05185 * 359.72806 * 3 2 1 5 5 C 1.38150 * 119.93781 * 179.69644 * 4 3 2 6 6 C 1.38260 * 120.05694 * 0.59747 * 5 4 3 7 7 C 1.50701 * 119.94313 * 179.70047 * 6 5 4 8 8 H 1.09001 * 112.84701 * 191.18044 * 7 6 5 9 9 C 1.53778 * 113.61477 * 322.47906 * 7 6 5 10 10 C 1.53777 * 87.08292 * 139.98229 * 9 7 6 11 11 H 1.08994 * 113.61527 * 89.11455 * 10 9 7 12 12 N 1.46501 * 113.61844 * 220.02411 * 10 9 7 13 13 C 1.38609 * 119.99899 * 252.49860 * 12 10 9 14 14 N 1.29688 * 124.94989 * 179.72125 * 13 12 10 15 15 C 1.32128 * 116.86448 * 179.81257 * 14 13 12 16 16 C 1.50695 * 122.70770 * 180.22535 * 15 14 13 17 17 O 1.42902 * 109.47013 * 210.26577 * 16 15 14 18 18 Si 1.86302 * 109.47208 * 330.26158 * 16 15 14 19 19 C 1.33324 * 114.57810 * 0.46646 * 15 14 13 20 20 C 1.50696 * 125.95241 * 179.75115 * 19 15 14 21 21 S 1.70970 * 124.94790 * 0.02562 * 13 12 10 22 22 C 1.53779 * 113.61300 * 59.97892 * 7 6 5 23 23 C 1.38268 * 120.11154 * 359.68338 * 6 5 4 24 24 C 1.38145 * 120.05618 * 0.02562 * 23 6 5 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99705 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99826 * 1 2 3 28 28 H 1.07999 * 120.03086 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.96320 * 180.27768 * 5 4 3 30 30 H 1.08999 * 113.61947 * 254.53552 * 9 7 6 31 31 H 1.09008 * 113.61300 * 25.43347 * 9 7 6 32 32 H 0.96998 * 120.00164 * 72.49683 * 12 10 9 33 33 H 1.08995 * 109.47251 * 90.26446 * 16 15 14 34 34 H 0.96704 * 114.00118 * 59.99387 * 17 16 15 35 35 H 1.48500 * 109.99818 * 180.02562 * 18 16 15 36 36 H 1.48496 * 110.00073 * 301.32403 * 18 16 15 37 37 H 1.08998 * 109.47503 * 179.97438 * 20 19 15 38 38 H 1.09005 * 109.47088 * 299.98246 * 20 19 15 39 39 H 1.09005 * 109.46621 * 59.97642 * 20 19 15 40 40 H 1.08994 * 113.61722 * 334.56847 * 22 7 6 41 41 H 1.08997 * 113.60983 * 105.47400 * 22 7 6 42 42 H 1.08001 * 119.97082 * 179.97438 * 23 6 5 43 43 H 1.08001 * 120.02745 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3751 -0.0057 5 6 1.9213 3.6047 0.0007 6 6 3.3021 3.6757 0.0002 7 6 3.9863 5.0184 0.0003 8 1 5.0564 4.9482 -0.1948 9 6 3.2699 6.0749 -0.8573 10 6 3.5931 7.0845 0.2567 11 1 4.5556 7.5802 0.1310 12 7 2.5013 8.0209 0.5350 13 6 2.6081 9.3461 0.1429 14 7 1.7012 10.2530 0.3349 15 6 1.9721 11.4702 -0.1020 16 6 1.0154 12.6238 0.0560 17 8 1.1888 13.5382 -1.0284 18 14 -0.7343 11.9841 0.0551 19 6 3.1580 11.5941 -0.6984 20 6 3.7215 12.8590 -1.2929 21 16 3.9515 10.0215 -0.6709 22 6 3.6382 5.8870 1.2207 23 6 4.0562 2.5168 0.0000 24 6 3.4314 1.2847 -0.0003 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 0.2130 2.3202 -0.0106 29 1 1.3343 4.5113 0.0008 30 1 3.7748 6.2879 -1.7996 31 1 2.2032 5.8872 -0.9805 32 1 1.7038 7.7135 0.9936 33 1 1.2150 13.1349 0.9978 34 1 1.0271 13.1506 -1.8994 35 1 -1.6876 13.1122 0.2097 36 1 -1.0088 11.2575 -1.2105 37 1 4.7081 12.6565 -1.7097 38 1 3.0598 13.2158 -2.0822 39 1 3.8042 13.6198 -0.5166 40 1 2.6724 5.6480 1.6656 41 1 4.4405 5.9484 1.9559 42 1 5.1346 2.5749 -0.0008 43 1 4.0209 0.3798 0.0000 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15100432_15704122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:11:55 Heat of formation + Delta-G solvation = 34.424797 kcal Electronic energy + Delta-G solvation = -25177.752899 eV Core-core repulsion = 21510.563535 eV Total energy + Delta-G solvation = -3667.189364 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.119 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.58066 -40.98162 -40.36113 -38.26918 -37.68950 -35.39922 -32.63176 -32.08097 -31.16143 -29.25289 -28.33972 -26.91517 -25.92863 -25.36117 -24.15399 -23.78074 -22.44279 -21.12345 -20.09223 -19.31712 -19.00953 -17.95851 -17.56482 -17.26682 -16.92187 -16.70309 -16.57044 -16.22815 -15.82570 -15.63731 -15.35559 -15.04051 -14.72699 -14.51273 -14.31522 -14.12379 -13.95216 -13.73182 -13.66158 -13.47165 -13.34293 -13.20698 -12.91490 -12.68324 -12.48729 -12.33862 -12.18452 -11.80655 -11.74550 -11.67702 -11.56018 -10.93230 -10.57062 -10.47150 -9.99175 -9.97710 -9.05302 -8.58406 -4.65953 0.04814 0.20702 0.35228 0.39258 0.80608 1.40508 1.83975 1.89986 1.98755 2.13426 2.30593 2.69056 3.24814 3.32058 3.43459 3.53468 3.55397 3.75035 3.80678 3.88713 3.96654 4.10308 4.17590 4.18888 4.28266 4.34594 4.35903 4.43906 4.52256 4.54354 4.58645 4.61448 4.69006 4.79932 4.80699 4.81232 4.91428 5.00331 5.04009 5.12674 5.29146 5.32001 5.36802 5.61369 5.66211 5.76378 6.26703 6.39757 6.40606 6.97871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.125 3.875 4 C -0.206 4.206 5 C -0.076 4.076 6 C -0.109 4.109 7 C -0.064 4.064 8 H 0.104 0.896 9 C -0.148 4.148 10 C 0.126 3.874 11 H 0.109 0.891 12 N -0.682 5.682 13 C 0.320 3.680 14 N -0.539 5.539 15 C 0.068 3.932 16 C -0.042 4.042 17 O -0.526 6.526 18 Si 0.722 3.278 19 C -0.243 4.243 20 C -0.059 4.059 21 S 0.099 5.901 22 C -0.132 4.132 23 C -0.074 4.074 24 C -0.150 4.150 25 H 0.101 0.899 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.413 0.587 33 H 0.124 0.876 34 H 0.375 0.625 35 H -0.261 1.261 36 H -0.268 1.268 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.130 0.870 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.955 -2.960 0.558 3.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.080 3.920 4 C -0.224 4.224 5 C -0.094 4.094 6 C -0.109 4.109 7 C -0.082 4.082 8 H 0.122 0.878 9 C -0.188 4.188 10 C 0.020 3.980 11 H 0.127 0.873 12 N -0.322 5.322 13 C -0.051 4.051 14 N -0.266 5.266 15 C -0.063 4.063 16 C -0.154 4.154 17 O -0.331 6.331 18 Si 0.622 3.378 19 C -0.365 4.365 20 C -0.119 4.119 21 S 0.348 5.652 22 C -0.170 4.170 23 C -0.092 4.092 24 C -0.168 4.168 25 H 0.120 0.880 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.146 0.854 29 H 0.142 0.858 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.252 0.748 33 H 0.141 0.859 34 H 0.223 0.777 35 H -0.187 1.187 36 H -0.193 1.193 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.148 0.852 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.014 -3.382 0.518 3.569 hybrid contribution -0.625 0.700 -0.715 1.180 sum 0.388 -2.682 -0.197 2.717 Atomic orbital electron populations 1.23091 0.78083 1.04247 1.01418 1.86088 1.21623 1.26893 1.88543 1.19097 0.92455 0.84268 0.96199 1.21248 1.00162 0.92317 1.08694 1.20768 0.93979 0.96963 0.97652 1.19470 0.93300 0.94184 1.03989 1.21229 0.99928 0.90406 0.96681 0.87776 1.23739 1.02109 0.94678 0.98235 1.22697 0.90080 0.87902 0.97321 0.87347 1.44000 1.21736 1.02932 1.63513 1.23335 0.93910 0.90525 0.97313 1.65739 1.31317 1.00140 1.29406 1.20067 0.94840 0.92263 0.99113 1.24465 1.08012 0.89958 0.92981 1.86623 1.91541 1.37932 1.17024 0.93638 0.73374 0.81604 0.89172 1.25122 0.98628 0.99134 1.13666 1.20138 0.99696 0.91293 1.00747 1.83954 1.20312 1.03314 1.57644 1.23464 1.03503 0.93286 0.96787 1.20880 0.99890 0.90913 0.97483 1.20469 0.91438 0.98828 1.06084 0.88017 0.92561 0.92531 0.85412 0.85827 0.90328 0.88852 0.74816 0.85866 0.77685 1.18657 1.19264 0.92307 0.90253 0.90569 0.88865 0.89914 0.85205 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 9.81 101.05 0.99 0.95 16 2 O -0.32 -0.64 10.50 -19.43 -0.20 -0.84 16 3 C 0.13 0.22 6.69 -39.22 -0.26 -0.05 16 4 C -0.21 -0.08 9.04 -39.43 -0.36 -0.43 16 5 C -0.08 0.04 8.60 -39.61 -0.34 -0.30 16 6 C -0.11 0.09 5.29 -104.60 -0.55 -0.47 16 7 C -0.06 0.17 3.98 -90.96 -0.36 -0.19 16 8 H 0.10 -0.36 8.09 -51.93 -0.42 -0.78 16 9 C -0.15 0.37 7.25 -25.92 -0.19 0.18 16 10 C 0.13 -0.32 4.23 -67.11 -0.28 -0.60 16 11 H 0.11 -0.28 7.06 -51.93 -0.37 -0.65 16 12 N -0.68 0.72 5.51 -54.99 -0.30 0.41 16 13 C 0.32 0.45 8.24 -87.68 -0.72 -0.28 16 14 N -0.54 -1.45 8.94 -11.36 -0.10 -1.55 16 15 C 0.07 0.16 5.92 -84.18 -0.50 -0.33 16 16 C -0.04 -0.06 2.94 36.00 0.11 0.05 16 17 O -0.53 -0.68 10.17 -35.23 -0.36 -1.04 16 18 Si 0.72 1.00 32.08 -169.99 -5.45 -4.45 16 19 C -0.24 -0.46 6.50 -36.03 -0.23 -0.70 16 20 C -0.06 -0.02 8.91 36.00 0.32 0.30 16 21 S 0.10 0.08 21.69 -107.50 -2.33 -2.25 16 22 C -0.13 0.41 7.30 -25.92 -0.19 0.22 16 23 C -0.07 0.02 9.70 -39.60 -0.38 -0.36 16 24 C -0.15 -0.16 9.99 -39.44 -0.39 -0.55 16 25 H 0.10 -0.29 8.14 -51.93 -0.42 -0.72 16 26 H 0.06 -0.12 7.65 -51.93 -0.40 -0.52 16 27 H 0.06 -0.13 7.67 -51.93 -0.40 -0.53 16 28 H 0.13 -0.15 6.30 -52.49 -0.33 -0.48 16 29 H 0.12 -0.26 6.65 -52.48 -0.35 -0.61 16 30 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 31 H 0.09 -0.20 6.31 -51.92 -0.33 -0.53 16 32 H 0.41 -0.80 8.85 -40.82 -0.36 -1.16 16 33 H 0.12 0.08 7.96 -51.93 -0.41 -0.33 16 34 H 0.38 -0.41 8.13 45.56 0.37 -0.04 16 35 H -0.26 -0.95 7.11 56.52 0.40 -0.55 16 36 H -0.27 -1.10 7.11 56.52 0.40 -0.70 16 37 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 38 H 0.08 -0.02 6.40 -51.93 -0.33 -0.36 16 39 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 40 H 0.09 -0.29 7.70 -51.93 -0.40 -0.69 16 41 H 0.08 -0.27 8.14 -51.93 -0.42 -0.70 16 42 H 0.13 -0.29 8.05 -52.49 -0.42 -0.72 16 43 H 0.13 0.02 8.06 -52.49 -0.42 -0.40 16 LS Contribution 363.07 15.07 5.47 5.47 Total: 0.00 -6.15 363.07 -12.51 -18.67 By element: Atomic # 1 Polarization: -5.98 SS G_CDS: -5.88 Total: -11.86 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -3.35 Total: -2.56 kcal Atomic # 7 Polarization: -0.73 SS G_CDS: -0.40 Total: -1.13 kcal Atomic # 8 Polarization: -1.32 SS G_CDS: -0.56 Total: -1.88 kcal Atomic # 14 Polarization: 1.00 SS G_CDS: -5.45 Total: -4.45 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.33 Total: -2.25 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -6.15 -12.51 -18.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15100432_15704122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.091 kcal (2) G-P(sol) polarization free energy of solvation -6.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds