Wall clock time and date at job start Mon Mar 8 2021 06:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 117.00336 * 2 1 4 4 C 1.38735 * 120.05185 * 359.72806 * 3 2 1 5 5 C 1.38150 * 119.93781 * 179.69644 * 4 3 2 6 6 C 1.38260 * 120.05694 * 0.59747 * 5 4 3 7 7 C 1.50701 * 119.94313 * 179.70047 * 6 5 4 8 8 H 1.09001 * 112.84701 * 191.18044 * 7 6 5 9 9 C 1.53778 * 113.61477 * 322.47906 * 7 6 5 10 10 C 1.53777 * 87.08292 * 139.98229 * 9 7 6 11 11 H 1.08994 * 113.61527 * 89.11455 * 10 9 7 12 12 N 1.46501 * 113.61844 * 220.02411 * 10 9 7 13 13 C 1.38609 * 119.99899 * 252.49860 * 12 10 9 14 14 N 1.29688 * 124.94989 * 179.72125 * 13 12 10 15 15 C 1.32128 * 116.86448 * 179.81257 * 14 13 12 16 16 C 1.50695 * 122.70770 * 180.22535 * 15 14 13 17 17 O 1.42902 * 109.47013 * 210.26577 * 16 15 14 18 18 Si 1.86302 * 109.47208 * 330.26158 * 16 15 14 19 19 C 1.33324 * 114.57810 * 0.46646 * 15 14 13 20 20 C 1.50696 * 125.95241 * 179.75115 * 19 15 14 21 21 S 1.70970 * 124.94790 * 0.02562 * 13 12 10 22 22 C 1.53779 * 113.61300 * 59.97892 * 7 6 5 23 23 C 1.38268 * 120.11154 * 359.68338 * 6 5 4 24 24 C 1.38145 * 120.05618 * 0.02562 * 23 6 5 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99705 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99826 * 1 2 3 28 28 H 1.07999 * 120.03086 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.96320 * 180.27768 * 5 4 3 30 30 H 1.08999 * 113.61947 * 254.53552 * 9 7 6 31 31 H 1.09008 * 113.61300 * 25.43347 * 9 7 6 32 32 H 0.96998 * 120.00164 * 72.49683 * 12 10 9 33 33 H 1.08995 * 109.47251 * 90.26446 * 16 15 14 34 34 H 0.96704 * 114.00118 * 59.99387 * 17 16 15 35 35 H 1.48500 * 109.99818 * 180.02562 * 18 16 15 36 36 H 1.48496 * 110.00073 * 301.32403 * 18 16 15 37 37 H 1.08998 * 109.47503 * 179.97438 * 20 19 15 38 38 H 1.09005 * 109.47088 * 299.98246 * 20 19 15 39 39 H 1.09005 * 109.46621 * 59.97642 * 20 19 15 40 40 H 1.08994 * 113.61722 * 334.56847 * 22 7 6 41 41 H 1.08997 * 113.60983 * 105.47400 * 22 7 6 42 42 H 1.08001 * 119.97082 * 179.97438 * 23 6 5 43 43 H 1.08001 * 120.02745 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3751 -0.0057 5 6 1.9213 3.6047 0.0007 6 6 3.3021 3.6757 0.0002 7 6 3.9863 5.0184 0.0003 8 1 5.0564 4.9482 -0.1948 9 6 3.2699 6.0749 -0.8573 10 6 3.5931 7.0845 0.2567 11 1 4.5556 7.5802 0.1310 12 7 2.5013 8.0209 0.5350 13 6 2.6081 9.3461 0.1429 14 7 1.7012 10.2530 0.3349 15 6 1.9721 11.4702 -0.1020 16 6 1.0154 12.6238 0.0560 17 8 1.1888 13.5382 -1.0284 18 14 -0.7343 11.9841 0.0551 19 6 3.1580 11.5941 -0.6984 20 6 3.7215 12.8590 -1.2929 21 16 3.9515 10.0215 -0.6709 22 6 3.6382 5.8870 1.2207 23 6 4.0562 2.5168 0.0000 24 6 3.4314 1.2847 -0.0003 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 0.2130 2.3202 -0.0106 29 1 1.3343 4.5113 0.0008 30 1 3.7748 6.2879 -1.7996 31 1 2.2032 5.8872 -0.9805 32 1 1.7038 7.7135 0.9936 33 1 1.2150 13.1349 0.9978 34 1 1.0271 13.1506 -1.8994 35 1 -1.6876 13.1122 0.2097 36 1 -1.0088 11.2575 -1.2105 37 1 4.7081 12.6565 -1.7097 38 1 3.0598 13.2158 -2.0822 39 1 3.8042 13.6198 -0.5166 40 1 2.6724 5.6480 1.6656 41 1 4.4405 5.9484 1.9559 42 1 5.1346 2.5749 -0.0008 43 1 4.0209 0.3798 0.0000 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15100432_15704122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:11:54 Heat of formation + Delta-G solvation = 40.536663 kcal Electronic energy + Delta-G solvation = -25177.487869 eV Core-core repulsion = 21510.563535 eV Total energy + Delta-G solvation = -3666.924334 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.119 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.48977 -41.03500 -40.28669 -38.25582 -37.72344 -35.36262 -32.64812 -32.03248 -31.10798 -29.30142 -28.24510 -26.69509 -25.90490 -25.35938 -24.16821 -23.71624 -22.37001 -21.09520 -20.01279 -19.29185 -19.01402 -18.02070 -17.52558 -17.24348 -16.85814 -16.67508 -16.63018 -16.08849 -15.79907 -15.70019 -15.37738 -14.95029 -14.65225 -14.45007 -14.27564 -14.23038 -13.93971 -13.81432 -13.48973 -13.45079 -13.27751 -13.08114 -12.84264 -12.69605 -12.49396 -12.30284 -12.13569 -11.94577 -11.62709 -11.57209 -11.42335 -10.90052 -10.65175 -10.54090 -10.03842 -9.95977 -9.02862 -8.59488 -4.79676 -0.02122 0.16738 0.38527 0.41700 0.73828 1.29125 1.66171 1.82419 1.97123 1.99876 2.37749 2.73168 3.28566 3.44836 3.51470 3.63075 3.71468 3.87723 3.95019 3.99602 4.09076 4.17023 4.25148 4.32544 4.33541 4.41598 4.47135 4.52488 4.56885 4.68803 4.72982 4.77219 4.80278 4.83322 4.86941 4.97773 5.03977 5.05240 5.12047 5.21017 5.29562 5.36561 5.41029 5.67675 5.76392 5.84037 6.31571 6.43203 6.43994 6.93315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.102 3.898 4 C -0.214 4.214 5 C -0.080 4.080 6 C -0.109 4.109 7 C -0.059 4.059 8 H 0.116 0.884 9 C -0.146 4.146 10 C 0.126 3.874 11 H 0.112 0.888 12 N -0.675 5.675 13 C 0.312 3.688 14 N -0.560 5.560 15 C 0.056 3.944 16 C -0.041 4.041 17 O -0.533 6.533 18 Si 0.782 3.218 19 C -0.258 4.258 20 C -0.057 4.057 21 S 0.116 5.884 22 C -0.125 4.125 23 C -0.079 4.079 24 C -0.169 4.169 25 H 0.114 0.886 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.417 0.583 33 H 0.131 0.869 34 H 0.384 0.616 35 H -0.292 1.292 36 H -0.305 1.305 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.148 0.852 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.615 -2.717 0.745 3.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.057 3.943 4 C -0.232 4.232 5 C -0.098 4.098 6 C -0.110 4.110 7 C -0.078 4.078 8 H 0.134 0.866 9 C -0.185 4.185 10 C 0.021 3.979 11 H 0.130 0.870 12 N -0.314 5.314 13 C -0.059 4.059 14 N -0.287 5.287 15 C -0.075 4.075 16 C -0.154 4.154 17 O -0.340 6.340 18 Si 0.688 3.312 19 C -0.381 4.381 20 C -0.117 4.117 21 S 0.366 5.634 22 C -0.163 4.163 23 C -0.097 4.097 24 C -0.187 4.187 25 H 0.132 0.868 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.257 0.743 33 H 0.149 0.851 34 H 0.234 0.766 35 H -0.220 1.220 36 H -0.233 1.233 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.166 0.834 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.686 -3.161 0.716 3.654 hybrid contribution -0.846 0.588 -0.816 1.315 sum 0.839 -2.573 -0.101 2.709 Atomic orbital electron populations 1.23284 0.76714 1.05336 1.02082 1.86045 1.23236 1.27453 1.88835 1.19358 0.92971 0.84645 0.97295 1.21450 1.00838 0.92310 1.08652 1.21013 0.94437 0.97201 0.97173 1.19700 0.93333 0.94874 1.03061 1.21253 1.00411 0.89271 0.96875 0.86561 1.23714 1.01986 0.94613 0.98234 1.22787 0.89763 0.87721 0.97655 0.87009 1.44140 1.22242 1.02232 1.62809 1.23589 0.94013 0.91156 0.97185 1.65742 1.32099 1.00483 1.30412 1.20201 0.95288 0.92473 0.99512 1.24485 1.07559 0.89927 0.93387 1.86598 1.91491 1.38229 1.17646 0.92895 0.72188 0.79094 0.87053 1.25365 0.98830 1.00123 1.13805 1.20147 1.00135 0.90662 1.00708 1.83811 1.19697 1.02569 1.57370 1.23427 1.03838 0.92426 0.96619 1.21142 1.00946 0.90575 0.96991 1.20682 0.91587 0.99575 1.06883 0.86794 0.91925 0.91797 0.84335 0.84320 0.90340 0.89123 0.74331 0.85144 0.76610 1.22016 1.23257 0.91617 0.89701 0.90985 0.88723 0.89272 0.83414 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.07 16 2 O -0.34 -1.78 10.50 -92.43 -0.97 -2.75 16 3 C 0.10 0.46 6.69 22.51 0.15 0.61 16 4 C -0.21 -0.23 9.04 22.37 0.20 -0.03 16 5 C -0.08 0.11 8.60 22.25 0.19 0.31 16 6 C -0.11 0.25 5.29 -19.85 -0.11 0.14 16 7 C -0.06 0.39 3.98 -11.02 -0.04 0.35 16 8 H 0.12 -1.02 8.09 -2.39 -0.02 -1.04 16 9 C -0.15 0.89 7.25 31.12 0.23 1.12 16 10 C 0.13 -0.78 4.23 45.52 0.19 -0.59 16 11 H 0.11 -0.73 7.06 -2.39 -0.02 -0.75 16 12 N -0.67 1.94 5.51 -327.89 -1.81 0.13 16 13 C 0.31 0.73 8.24 179.32 1.48 2.21 16 14 N -0.56 -2.97 8.94 -189.86 -1.70 -4.66 16 15 C 0.06 0.27 5.92 41.40 0.25 0.52 16 16 C -0.04 -0.12 2.94 71.23 0.21 0.09 16 17 O -0.53 -1.40 10.17 -148.98 -1.52 -2.92 16 18 Si 0.78 2.74 32.08 68.60 2.20 4.94 16 19 C -0.26 -0.93 6.50 24.57 0.16 -0.77 16 20 C -0.06 -0.03 8.91 71.23 0.63 0.60 16 21 S 0.12 0.13 21.69 -56.49 -1.23 -1.10 16 22 C -0.12 0.95 7.30 31.12 0.23 1.18 16 23 C -0.08 0.06 9.70 22.25 0.22 0.27 16 24 C -0.17 -0.51 9.99 22.36 0.22 -0.29 16 25 H 0.11 -0.62 8.14 -2.39 -0.02 -0.64 16 26 H 0.06 -0.25 7.65 -2.39 -0.02 -0.27 16 27 H 0.06 -0.27 7.67 -2.38 -0.02 -0.28 16 28 H 0.14 -0.31 6.30 -2.91 -0.02 -0.32 16 29 H 0.14 -0.71 6.65 -2.91 -0.02 -0.73 16 30 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H 0.09 -0.48 6.31 -2.38 -0.02 -0.49 16 32 H 0.42 -1.92 8.85 -92.71 -0.82 -2.74 16 33 H 0.13 0.16 7.96 -2.39 -0.02 0.14 16 34 H 0.38 -0.77 8.13 -74.05 -0.60 -1.37 16 35 H -0.29 -2.48 7.11 99.48 0.71 -1.77 16 36 H -0.31 -2.96 7.11 99.48 0.71 -2.25 16 37 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.08 -0.08 6.40 -2.38 -0.02 -0.09 16 39 H 0.07 0.10 8.14 -2.38 -0.02 0.08 16 40 H 0.09 -0.71 7.70 -2.39 -0.02 -0.73 16 41 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 42 H 0.15 -0.78 8.05 -2.91 -0.02 -0.80 16 43 H 0.13 0.24 8.06 -2.91 -0.02 0.22 16 Total: 0.00 -14.71 363.07 -0.03 -14.74 By element: Atomic # 1 Polarization: -14.82 SS G_CDS: -0.33 Total: -15.15 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 5.32 Total: 6.78 kcal Atomic # 7 Polarization: -1.03 SS G_CDS: -3.50 Total: -4.53 kcal Atomic # 8 Polarization: -3.18 SS G_CDS: -2.49 Total: -5.67 kcal Atomic # 14 Polarization: 2.74 SS G_CDS: 2.20 Total: 4.94 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -1.23 Total: -1.10 kcal Total: -14.71 -0.03 -14.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15100432_15704122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.273 kcal (2) G-P(sol) polarization free energy of solvation -14.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds