Wall clock time and date at job start Mon Mar 8 2021 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35905 * 116.99491 * 2 1 4 4 C 1.38738 * 120.05284 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94426 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.05441 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94669 * 179.97438 * 6 5 4 8 8 H 1.09004 * 112.84345 * 348.80862 * 7 6 5 9 9 C 1.53781 * 113.61238 * 119.99577 * 7 6 5 10 10 C 1.53788 * 87.07979 * 140.07153 * 9 7 6 11 11 H 1.08994 * 113.61222 * 89.19687 * 10 9 7 12 12 N 1.46495 * 113.61425 * 220.02137 * 10 9 7 13 13 C 1.39140 * 120.00119 * 204.99962 * 12 10 9 14 14 N 1.32341 * 119.71829 * 0.26510 * 13 12 10 15 15 C 1.32007 * 121.64629 * 180.27154 * 14 13 12 16 16 C 1.37982 * 120.90207 * 359.72225 * 15 14 13 17 17 C 1.50697 * 120.32613 * 180.02562 * 16 15 14 18 18 O 1.42897 * 109.47579 * 244.98123 * 17 16 15 19 19 Si 1.86299 * 109.47243 * 4.98144 * 17 16 15 20 20 C 1.38904 * 119.34805 * 0.02562 * 16 15 14 21 21 C 1.38439 * 118.48364 * 0.02562 * 20 16 15 22 22 F 1.35104 * 120.47218 * 179.97438 * 21 20 16 23 23 C 1.53777 * 113.69571 * 217.53584 * 7 6 5 24 24 C 1.38268 * 120.11380 * 0.25150 * 6 5 4 25 25 C 1.38153 * 120.05265 * 359.45257 * 24 6 5 26 26 H 1.08995 * 109.46524 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46731 * 299.99369 * 1 2 3 28 28 H 1.08998 * 109.47114 * 60.00167 * 1 2 3 29 29 H 1.08000 * 120.02729 * 0.03912 * 4 3 2 30 30 H 1.07994 * 119.97274 * 179.97438 * 5 4 3 31 31 H 1.09001 * 113.61522 * 25.52116 * 9 7 6 32 32 H 1.08996 * 113.61766 * 254.61847 * 9 7 6 33 33 H 0.97006 * 120.00385 * 24.99810 * 12 10 9 34 34 H 1.08006 * 119.54802 * 179.70621 * 15 14 13 35 35 H 1.09007 * 109.47134 * 124.98088 * 17 16 15 36 36 H 0.96699 * 113.99821 * 59.99352 * 18 17 16 37 37 H 1.48500 * 110.00140 * 179.97438 * 19 17 16 38 38 H 1.48494 * 109.99976 * 301.31813 * 19 17 16 39 39 H 1.07997 * 120.75505 * 179.97438 * 20 16 15 40 40 H 1.08994 * 113.61456 * 105.45758 * 23 7 6 41 41 H 1.09001 * 113.61291 * 334.55507 * 23 7 6 42 42 H 1.08005 * 119.97560 * 179.70709 * 24 6 5 43 43 H 1.08000 * 120.02602 * 180.29831 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2850 -0.0005 5 6 4.0561 2.5171 0.0000 6 6 3.3018 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 1 5.0561 4.9483 0.1972 9 6 3.6372 5.8887 -1.2165 10 6 3.5947 7.0854 -0.2516 11 1 4.5576 7.5808 -0.1277 12 7 2.5036 8.0232 -0.5275 13 6 2.6127 9.3531 -0.1331 14 7 3.7069 9.7660 0.4863 15 6 3.8485 11.0174 0.8818 16 6 2.8553 11.9484 0.6566 17 6 3.0308 13.3738 1.1131 18 8 2.0650 13.6731 2.1229 19 14 4.7449 13.5968 1.8079 20 6 1.6920 11.5589 0.0050 21 6 1.5708 10.2398 -0.3973 22 9 0.4564 9.8173 -1.0338 23 6 3.2718 6.0753 0.8622 24 6 1.9210 3.6048 0.0079 25 6 1.2915 2.3751 0.0012 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 4.0209 0.3801 -0.0016 30 1 5.1344 2.5753 0.0000 31 1 2.6705 5.6510 -1.6603 32 1 4.4386 5.9498 -1.9528 33 1 1.7050 7.7171 -0.9853 34 1 4.7540 11.3166 1.3887 35 1 2.8916 14.0462 0.2665 36 1 2.1299 13.1120 2.9077 37 1 4.9309 14.9987 2.2611 38 1 4.9584 12.6631 2.9426 39 1 0.8999 12.2686 -0.1826 40 1 3.7781 6.2870 1.8038 41 1 2.2051 5.8886 0.9866 42 1 1.3340 4.5114 0.0140 43 1 0.2129 2.3201 0.0013 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15100432_17656566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:11:58 Heat of formation + Delta-G solvation = -8.257196 kcal Electronic energy + Delta-G solvation = -27049.085787 eV Core-core repulsion = 22976.976989 eV Total energy + Delta-G solvation = -4072.108798 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.137 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.95378 -41.61770 -41.22481 -40.19658 -38.29633 -37.79003 -35.49432 -33.22990 -32.07102 -31.76124 -30.68845 -28.30679 -26.78848 -26.61551 -25.68272 -24.54454 -23.62431 -22.97359 -22.06532 -20.52590 -19.21617 -19.18670 -18.62458 -18.34600 -17.65620 -17.28411 -17.01696 -16.73896 -16.68563 -16.27518 -16.07969 -15.79096 -15.72486 -15.49267 -14.97778 -14.85988 -14.62422 -14.35914 -14.33135 -14.14875 -13.95170 -13.44339 -13.44030 -13.31888 -13.00014 -12.78439 -12.65030 -12.36361 -12.16391 -12.02750 -11.63534 -11.58487 -11.38716 -11.10918 -10.73770 -10.64084 -10.52473 -9.97993 -9.04725 -8.74020 -4.87737 -0.07677 0.10985 0.36471 0.40218 1.32675 1.63467 2.00217 2.01564 2.36158 2.53446 2.71968 3.03342 3.28535 3.44591 3.54860 3.61256 3.73592 3.77330 3.85895 3.87100 3.94470 4.01232 4.03367 4.20434 4.25696 4.32231 4.40004 4.45214 4.48842 4.53609 4.64916 4.70212 4.73335 4.74789 4.77565 4.86460 4.98843 5.00956 5.06996 5.12257 5.20350 5.32795 5.38749 5.49682 5.71449 5.81755 6.01256 6.21199 6.41609 6.50832 6.96435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.103 3.897 4 C -0.167 4.167 5 C -0.079 4.079 6 C -0.110 4.110 7 C -0.059 4.059 8 H 0.114 0.886 9 C -0.131 4.131 10 C 0.137 3.863 11 H 0.118 0.882 12 N -0.703 5.703 13 C 0.383 3.617 14 N -0.525 5.525 15 C 0.147 3.853 16 C -0.204 4.204 17 C -0.068 4.068 18 O -0.549 6.549 19 Si 0.766 3.234 20 C -0.040 4.040 21 C -0.040 4.040 22 F -0.142 7.142 23 C -0.145 4.145 24 C -0.082 4.082 25 C -0.213 4.213 26 H 0.115 0.885 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.133 0.867 30 H 0.148 0.852 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.415 0.585 34 H 0.182 0.818 35 H 0.128 0.872 36 H 0.386 0.614 37 H -0.302 1.302 38 H -0.275 1.275 39 H 0.154 0.846 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.136 0.864 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.737 -0.144 -1.177 2.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.058 3.942 4 C -0.185 4.185 5 C -0.097 4.097 6 C -0.110 4.110 7 C -0.077 4.077 8 H 0.132 0.868 9 C -0.169 4.169 10 C 0.032 3.968 11 H 0.135 0.865 12 N -0.335 5.335 13 C 0.145 3.855 14 N -0.242 5.242 15 C -0.011 4.011 16 C -0.209 4.209 17 C -0.178 4.178 18 O -0.357 6.357 19 Si 0.671 3.329 20 C -0.066 4.066 21 C -0.066 4.066 22 F -0.121 7.121 23 C -0.183 4.183 24 C -0.100 4.100 25 C -0.232 4.232 26 H 0.133 0.867 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.151 0.849 30 H 0.166 0.834 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.253 0.747 34 H 0.199 0.801 35 H 0.146 0.854 36 H 0.236 0.764 37 H -0.230 1.230 38 H -0.201 1.201 39 H 0.171 0.829 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.153 0.847 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.872 -0.445 -0.763 3.004 hybrid contribution -2.620 0.044 0.408 2.652 sum 0.252 -0.401 -0.355 0.592 Atomic orbital electron populations 1.23286 0.76714 1.05377 1.02053 1.86047 1.23239 1.27348 1.88840 1.19338 0.92958 0.84617 0.97323 1.20685 0.91584 0.99528 1.06749 1.21141 1.00947 0.90567 0.97049 1.19738 0.93376 0.94968 1.02907 1.21234 1.00267 0.89236 0.96992 0.86839 1.23450 1.03184 0.93591 0.96711 1.22541 0.91222 0.87112 0.95887 0.86463 1.44698 1.21824 1.04466 1.62478 1.18621 0.88927 0.86647 0.91330 1.67346 1.21784 1.18782 1.16323 1.22742 0.98158 0.86603 0.93549 1.20886 0.95763 0.98522 1.05751 1.25048 1.04486 0.93135 0.95098 1.86587 1.55935 1.62542 1.30679 0.94114 0.77196 0.77059 0.84543 1.21443 0.98476 0.93365 0.93352 1.18163 0.86171 0.94570 1.07711 1.91464 1.49996 1.90384 1.80222 1.23625 1.01219 0.95134 0.98369 1.20991 0.94447 0.97164 0.97402 1.21434 1.00826 0.92260 1.08657 0.86693 0.91937 0.91854 0.84935 0.83408 0.89419 0.89702 0.74718 0.80129 0.85382 0.76435 1.22954 1.20125 0.82855 0.91075 0.89838 0.84659 0.84303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.34 -2.05 10.50 -92.48 -0.97 -3.02 16 3 C 0.10 0.57 6.69 22.51 0.15 0.72 16 4 C -0.17 -0.71 9.99 22.37 0.22 -0.49 16 5 C -0.08 -0.08 9.70 22.25 0.22 0.14 16 6 C -0.11 -0.01 5.29 -19.85 -0.11 -0.12 16 7 C -0.06 0.20 3.97 -11.01 -0.04 0.16 16 8 H 0.11 -0.62 8.09 -2.39 -0.02 -0.64 16 9 C -0.13 0.56 7.30 31.12 0.23 0.79 16 10 C 0.14 -0.34 4.27 45.52 0.19 -0.14 16 11 H 0.12 -0.14 7.40 -2.39 -0.02 -0.15 16 12 N -0.70 0.31 5.51 -321.78 -1.77 -1.46 16 13 C 0.38 1.07 7.49 133.09 1.00 2.07 16 14 N -0.53 -1.28 9.13 -193.03 -1.76 -3.04 16 15 C 0.15 -0.16 9.83 84.61 0.83 0.67 16 16 C -0.20 0.26 5.36 -19.77 -0.11 0.16 16 17 C -0.07 0.20 2.82 71.23 0.20 0.40 16 18 O -0.55 -0.32 12.84 -148.98 -1.91 -2.23 16 19 Si 0.77 -3.47 29.91 68.60 2.05 -1.42 16 20 C -0.04 -0.04 9.82 22.48 0.22 0.18 16 21 C -0.04 -0.13 7.35 22.58 0.17 0.03 16 22 F -0.14 -0.69 16.65 44.97 0.75 0.06 16 23 C -0.14 0.35 7.25 31.12 0.23 0.58 16 24 C -0.08 -0.06 8.62 22.26 0.19 0.13 16 25 C -0.21 -0.55 9.04 22.37 0.20 -0.34 16 26 H 0.11 -0.57 8.14 -2.39 -0.02 -0.59 16 27 H 0.06 -0.20 7.66 -2.39 -0.02 -0.22 16 28 H 0.06 -0.21 7.66 -2.39 -0.02 -0.23 16 29 H 0.13 0.36 8.06 -2.91 -0.02 0.34 16 30 H 0.15 -0.52 8.05 -2.91 -0.02 -0.54 16 31 H 0.09 -0.36 7.71 -2.39 -0.02 -0.38 16 32 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 33 H 0.41 -0.92 8.20 -92.70 -0.76 -1.68 16 34 H 0.18 -1.05 4.84 -2.91 -0.01 -1.06 16 35 H 0.13 -0.61 7.96 -2.38 -0.02 -0.63 16 36 H 0.39 -1.87 8.70 -74.06 -0.64 -2.52 16 37 H -0.30 -1.09 7.11 99.48 0.71 -0.39 16 38 H -0.27 0.38 7.01 99.48 0.70 1.08 16 39 H 0.15 -0.08 8.06 -2.91 -0.02 -0.10 16 40 H 0.07 -0.09 8.14 -2.39 -0.02 -0.10 16 41 H 0.08 -0.15 6.30 -2.39 -0.02 -0.16 16 42 H 0.14 -0.34 6.64 -2.91 -0.02 -0.36 16 43 H 0.14 -0.13 6.30 -2.91 -0.02 -0.15 16 Total: 0.00 -14.98 359.31 0.98 -14.00 By element: Atomic # 1 Polarization: -8.61 SS G_CDS: -0.31 Total: -8.92 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 4.90 Total: 6.02 kcal Atomic # 7 Polarization: -0.96 SS G_CDS: -3.53 Total: -4.50 kcal Atomic # 8 Polarization: -2.36 SS G_CDS: -2.88 Total: -5.25 kcal Atomic # 9 Polarization: -0.69 SS G_CDS: 0.75 Total: 0.06 kcal Atomic # 14 Polarization: -3.47 SS G_CDS: 2.05 Total: -1.42 kcal Total: -14.98 0.98 -14.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15100432_17656566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.743 kcal (2) G-P(sol) polarization free energy of solvation -14.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds