Wall clock time and date at job start Mon Mar 8 2021 06:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33325 * 125.94967 * 2 1 4 4 C 1.50699 * 122.71256 * 0.06285 * 3 2 1 5 5 O 1.42902 * 109.46768 * 329.97879 * 4 3 2 6 6 Si 1.86304 * 109.47199 * 209.98461 * 4 3 2 7 7 N 1.32124 * 114.57827 * 180.02562 * 3 2 1 8 8 C 1.29677 * 116.86660 * 0.02562 * 7 3 2 9 9 N 1.38617 * 124.95049 * 179.97438 * 8 7 3 10 10 C 1.46500 * 120.00286 * 179.97438 * 9 8 7 11 11 H 1.08996 * 109.47060 * 34.99444 * 10 9 8 12 12 C 1.52998 * 109.47341 * 154.99972 * 10 9 8 13 13 C 1.52991 * 109.47116 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47265 * 299.99877 * 13 12 10 15 15 H 1.09002 * 109.47203 * 300.00039 * 14 13 12 16 16 O 1.42900 * 109.47361 * 180.02562 * 14 13 12 17 17 C 1.42896 * 114.00175 * 150.00163 * 16 14 13 18 18 F 1.39899 * 109.47327 * 299.99761 * 17 16 14 19 19 F 1.39897 * 109.47337 * 60.00043 * 17 16 14 20 20 C 1.52998 * 109.47088 * 60.00394 * 14 13 12 21 21 C 1.53004 * 109.47083 * 299.99654 * 20 14 13 22 22 S 1.70965 * 110.10409 * 359.97438 * 8 7 3 23 23 H 1.08995 * 109.47137 * 89.99836 * 1 2 3 24 24 H 1.08998 * 109.47148 * 209.99564 * 1 2 3 25 25 H 1.09002 * 109.47409 * 329.99525 * 1 2 3 26 26 H 1.08999 * 109.47353 * 89.98291 * 4 3 2 27 27 H 0.96700 * 114.00177 * 180.02562 * 5 4 3 28 28 H 1.48500 * 110.00205 * 59.99531 * 6 4 3 29 29 H 1.48495 * 109.99919 * 181.31584 * 6 4 3 30 30 H 0.96996 * 119.99697 * 359.97438 * 9 8 7 31 31 H 1.08998 * 109.46623 * 300.00482 * 12 10 9 32 32 H 1.08996 * 109.46749 * 59.99894 * 12 10 9 33 33 H 1.08996 * 109.47365 * 60.00312 * 13 12 10 34 34 H 1.09005 * 109.47385 * 180.02562 * 13 12 10 35 35 H 1.09007 * 109.46859 * 180.02562 * 17 16 14 36 36 H 1.08996 * 109.47710 * 60.00076 * 20 14 13 37 37 H 1.09004 * 109.47375 * 180.02562 * 20 14 13 38 38 H 1.08996 * 109.47192 * 300.00739 * 21 20 14 39 39 H 1.08996 * 109.47158 * 179.97438 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7414 2.4830 0.0014 5 8 0.4809 2.5026 -0.6716 6 14 2.9317 3.6156 -0.8768 7 7 3.5850 0.8188 -0.0005 8 6 3.9314 -0.4308 -0.0015 9 7 5.2385 -0.8925 -0.0027 10 6 5.5066 -2.3328 -0.0032 11 1 4.7450 -2.8439 -0.5919 12 6 6.8847 -2.5948 -0.6140 13 6 7.1650 -4.0988 -0.6139 14 6 7.1362 -4.6229 0.8233 15 1 7.8978 -4.1113 1.4119 16 8 7.3986 -6.0276 0.8235 17 6 8.0485 -6.4973 2.0062 18 9 9.2789 -5.8476 2.1516 19 9 7.2444 -6.2275 3.1187 20 6 5.7581 -4.3609 1.4341 21 6 5.4778 -2.8568 1.4341 22 16 2.5413 -1.4260 -0.0011 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.6098 2.8207 1.0294 27 1 0.0686 3.3765 -0.7092 28 1 3.1198 3.1659 -2.2795 29 1 2.4176 5.0085 -0.8546 30 1 5.9755 -0.2620 -0.0032 31 1 6.9053 -2.2210 -1.6377 32 1 7.6462 -2.0836 -0.0251 33 1 6.4035 -4.6104 -1.2025 34 1 8.1470 -4.2855 -1.0486 35 1 8.2126 -7.5721 1.9281 36 1 4.9965 -4.8725 0.8456 37 1 5.7377 -4.7339 2.4582 38 1 6.2393 -2.3452 2.0226 39 1 4.4958 -2.6702 1.8688 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15100672_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:13:22 Heat of formation + Delta-G solvation = -145.676395 kcal Electronic energy + Delta-G solvation = -25236.309327 eV Core-core repulsion = 21135.306800 eV Total energy + Delta-G solvation = -4101.002527 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.100 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.13002 -48.23018 -41.03443 -40.49070 -38.50646 -37.62139 -35.49535 -32.77538 -32.12651 -30.27861 -28.80515 -26.46674 -25.50158 -24.53582 -23.87341 -23.13068 -21.61813 -20.18861 -19.43554 -19.25583 -18.87783 -18.70785 -18.21479 -17.24144 -17.05604 -16.33722 -16.14748 -15.86500 -15.64975 -15.60927 -15.11258 -15.06414 -14.68430 -14.54739 -14.40480 -14.00029 -13.87607 -13.81464 -13.79407 -13.55032 -13.44899 -13.29570 -12.99782 -12.86412 -12.48842 -12.40547 -12.30369 -12.11359 -11.75381 -11.55764 -11.29487 -10.99263 -10.54356 -10.35161 -9.90789 -8.54419 -4.65660 0.12181 0.24478 0.86527 1.40190 1.73930 1.78599 1.93371 2.01857 2.18340 2.60531 3.07908 3.30149 3.33972 3.49837 3.64984 3.79324 3.83944 3.89316 3.91851 3.97074 4.09471 4.20763 4.23106 4.35482 4.43053 4.46172 4.50058 4.62774 4.80225 4.87560 4.89122 4.91525 4.92534 5.00856 5.07967 5.20238 5.39909 5.48145 5.63461 6.31296 6.48046 6.99838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.231 4.231 3 C 0.105 3.895 4 C -0.042 4.042 5 O -0.534 6.534 6 Si 0.718 3.282 7 N -0.539 5.539 8 C 0.322 3.678 9 N -0.691 5.691 10 C 0.150 3.850 11 H 0.085 0.915 12 C -0.122 4.122 13 C -0.110 4.110 14 C 0.076 3.924 15 H 0.077 0.923 16 O -0.378 6.378 17 C 0.404 3.596 18 F -0.208 7.208 19 F -0.207 7.207 20 C -0.142 4.142 21 C -0.134 4.134 22 S 0.097 5.903 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.382 0.618 28 H -0.263 1.263 29 H -0.265 1.265 30 H 0.413 0.587 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.168 0.832 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.617 -1.817 0.980 2.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.354 4.354 3 C -0.024 4.024 4 C -0.154 4.154 5 O -0.341 6.341 6 Si 0.618 3.382 7 N -0.266 5.266 8 C -0.049 4.049 9 N -0.331 5.331 10 C 0.044 3.956 11 H 0.103 0.897 12 C -0.160 4.160 13 C -0.148 4.148 14 C 0.020 3.980 15 H 0.095 0.905 16 O -0.300 6.300 17 C 0.312 3.688 18 F -0.190 7.190 19 F -0.189 7.189 20 C -0.180 4.180 21 C -0.174 4.174 22 S 0.346 5.654 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.230 0.770 28 H -0.188 1.188 29 H -0.191 1.191 30 H 0.251 0.749 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.185 0.815 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.100 -2.860 0.115 3.550 hybrid contribution -0.959 1.463 0.280 1.772 sum 1.141 -1.397 0.395 1.847 Atomic orbital electron populations 1.20085 0.86522 1.02349 1.02677 1.25112 1.01391 0.92683 1.16186 1.18746 0.86540 0.94913 1.02230 1.23986 0.92154 0.97823 1.01455 1.86579 1.33069 1.35005 1.79491 0.93694 0.87424 0.74993 0.82065 1.65596 1.16790 1.16602 1.27614 1.23174 0.91829 0.91211 0.98721 1.43979 1.01755 1.06812 1.80558 1.21215 0.98470 0.79053 0.96819 0.89697 1.21731 0.95509 0.96189 1.02536 1.21515 1.04054 0.94450 0.94808 1.22406 0.97361 0.79793 0.98478 0.90530 1.88445 1.77582 1.26061 1.37871 1.23209 0.73222 0.96832 0.75497 1.93071 1.45461 1.84966 1.95490 1.93066 1.74260 1.95624 1.55919 1.22137 0.96925 0.96128 1.02831 1.22027 1.03479 0.95264 0.96580 1.83972 0.96565 1.10587 1.74262 0.91092 0.92453 0.89618 0.90049 0.77004 1.18754 1.19077 0.74853 0.89729 0.90414 0.90134 0.89922 0.81524 0.90330 0.89975 0.90729 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.10 8.96 36.00 0.32 0.23 16 2 C -0.23 -0.74 6.50 -36.02 -0.23 -0.98 16 3 C 0.10 0.38 5.95 -84.18 -0.50 -0.12 16 4 C -0.04 -0.07 2.82 36.01 0.10 0.03 16 5 O -0.53 -0.59 9.86 -35.23 -0.35 -0.93 16 6 Si 0.72 1.12 32.08 -169.99 -5.45 -4.33 16 7 N -0.54 -1.88 8.95 -11.36 -0.10 -1.98 16 8 C 0.32 0.65 8.22 -87.68 -0.72 -0.07 16 9 N -0.69 0.47 5.23 -55.78 -0.29 0.18 16 10 C 0.15 -0.31 2.40 -67.93 -0.16 -0.47 16 11 H 0.09 -0.14 7.25 -51.93 -0.38 -0.51 16 12 C -0.12 0.40 5.39 -26.74 -0.14 0.25 16 13 C -0.11 0.28 5.57 -26.74 -0.15 0.14 16 14 C 0.08 -0.11 2.40 -26.73 -0.06 -0.17 16 15 H 0.08 -0.09 7.20 -51.93 -0.37 -0.46 16 16 O -0.38 0.20 10.29 -35.23 -0.36 -0.16 16 17 C 0.40 -0.62 6.26 101.05 0.63 0.02 16 18 F -0.21 -0.07 16.63 2.25 0.04 -0.03 16 19 F -0.21 -0.04 15.46 2.25 0.03 0.00 16 20 C -0.14 0.22 5.39 -26.73 -0.14 0.07 16 21 C -0.13 0.24 5.51 -26.73 -0.15 0.09 16 22 S 0.10 0.16 21.69 -107.50 -2.33 -2.17 16 23 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 24 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 25 H 0.09 0.12 6.61 -51.93 -0.34 -0.22 16 26 H 0.08 -0.01 7.96 -51.93 -0.41 -0.42 16 27 H 0.38 -1.13 8.74 45.56 0.40 -0.73 16 28 H -0.26 -1.45 7.11 56.52 0.40 -1.05 16 29 H -0.26 -0.66 7.11 56.52 0.40 -0.26 16 30 H 0.41 -0.71 8.73 -40.82 -0.36 -1.07 16 31 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 32 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 33 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 34 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 35 H 0.17 -0.87 8.14 -51.93 -0.42 -1.29 16 36 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 37 H 0.08 -0.05 6.50 -51.93 -0.34 -0.39 16 38 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 39 H 0.08 -0.07 8.04 -51.93 -0.42 -0.48 16 LS Contribution 334.10 15.07 5.03 5.03 Total: 0.00 -6.49 334.10 -10.21 -16.71 By element: Atomic # 1 Polarization: -6.11 SS G_CDS: -5.22 Total: -11.34 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -1.21 Total: -0.98 kcal Atomic # 7 Polarization: -1.41 SS G_CDS: -0.39 Total: -1.80 kcal Atomic # 8 Polarization: -0.39 SS G_CDS: -0.71 Total: -1.10 kcal Atomic # 9 Polarization: -0.10 SS G_CDS: 0.07 Total: -0.03 kcal Atomic # 14 Polarization: 1.12 SS G_CDS: -5.45 Total: -4.33 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.33 Total: -2.17 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -6.49 -10.21 -16.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15100672_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.971 kcal (2) G-P(sol) polarization free energy of solvation -6.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds