Wall clock time and date at job start Mon Mar 8 2021 06:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33325 * 125.94967 * 2 1 4 4 C 1.50699 * 122.71256 * 0.06285 * 3 2 1 5 5 O 1.42902 * 109.46768 * 329.97879 * 4 3 2 6 6 Si 1.86304 * 109.47199 * 209.98461 * 4 3 2 7 7 N 1.32124 * 114.57827 * 180.02562 * 3 2 1 8 8 C 1.29677 * 116.86660 * 0.02562 * 7 3 2 9 9 N 1.38617 * 124.95049 * 179.97438 * 8 7 3 10 10 C 1.46500 * 120.00286 * 179.97438 * 9 8 7 11 11 H 1.08996 * 109.47060 * 34.99444 * 10 9 8 12 12 C 1.52998 * 109.47341 * 154.99972 * 10 9 8 13 13 C 1.52991 * 109.47116 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47265 * 299.99877 * 13 12 10 15 15 H 1.09002 * 109.47203 * 300.00039 * 14 13 12 16 16 O 1.42900 * 109.47361 * 180.02562 * 14 13 12 17 17 C 1.42896 * 114.00175 * 150.00163 * 16 14 13 18 18 F 1.39899 * 109.47327 * 299.99761 * 17 16 14 19 19 F 1.39897 * 109.47337 * 60.00043 * 17 16 14 20 20 C 1.52998 * 109.47088 * 60.00394 * 14 13 12 21 21 C 1.53004 * 109.47083 * 299.99654 * 20 14 13 22 22 S 1.70965 * 110.10409 * 359.97438 * 8 7 3 23 23 H 1.08995 * 109.47137 * 89.99836 * 1 2 3 24 24 H 1.08998 * 109.47148 * 209.99564 * 1 2 3 25 25 H 1.09002 * 109.47409 * 329.99525 * 1 2 3 26 26 H 1.08999 * 109.47353 * 89.98291 * 4 3 2 27 27 H 0.96700 * 114.00177 * 180.02562 * 5 4 3 28 28 H 1.48500 * 110.00205 * 59.99531 * 6 4 3 29 29 H 1.48495 * 109.99919 * 181.31584 * 6 4 3 30 30 H 0.96996 * 119.99697 * 359.97438 * 9 8 7 31 31 H 1.08998 * 109.46623 * 300.00482 * 12 10 9 32 32 H 1.08996 * 109.46749 * 59.99894 * 12 10 9 33 33 H 1.08996 * 109.47365 * 60.00312 * 13 12 10 34 34 H 1.09005 * 109.47385 * 180.02562 * 13 12 10 35 35 H 1.09007 * 109.46859 * 180.02562 * 17 16 14 36 36 H 1.08996 * 109.47710 * 60.00076 * 20 14 13 37 37 H 1.09004 * 109.47375 * 180.02562 * 20 14 13 38 38 H 1.08996 * 109.47192 * 300.00739 * 21 20 14 39 39 H 1.08996 * 109.47158 * 179.97438 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7414 2.4830 0.0014 5 8 0.4809 2.5026 -0.6716 6 14 2.9317 3.6156 -0.8768 7 7 3.5850 0.8188 -0.0005 8 6 3.9314 -0.4308 -0.0015 9 7 5.2385 -0.8925 -0.0027 10 6 5.5066 -2.3328 -0.0032 11 1 4.7450 -2.8439 -0.5919 12 6 6.8847 -2.5948 -0.6140 13 6 7.1650 -4.0988 -0.6139 14 6 7.1362 -4.6229 0.8233 15 1 7.8978 -4.1113 1.4119 16 8 7.3986 -6.0276 0.8235 17 6 8.0485 -6.4973 2.0062 18 9 9.2789 -5.8476 2.1516 19 9 7.2444 -6.2275 3.1187 20 6 5.7581 -4.3609 1.4341 21 6 5.4778 -2.8568 1.4341 22 16 2.5413 -1.4260 -0.0011 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.6098 2.8207 1.0294 27 1 0.0686 3.3765 -0.7092 28 1 3.1198 3.1659 -2.2795 29 1 2.4176 5.0085 -0.8546 30 1 5.9755 -0.2620 -0.0032 31 1 6.9053 -2.2210 -1.6377 32 1 7.6462 -2.0836 -0.0251 33 1 6.4035 -4.6104 -1.2025 34 1 8.1470 -4.2855 -1.0486 35 1 8.2126 -7.5721 1.9281 36 1 4.9965 -4.8725 0.8456 37 1 5.7377 -4.7339 2.4582 38 1 6.2393 -2.3452 2.0226 39 1 4.4958 -2.6702 1.8688 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15100672_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:13:21 Heat of formation + Delta-G solvation = -142.277272 kcal Electronic energy + Delta-G solvation = -25236.161930 eV Core-core repulsion = 21135.306800 eV Total energy + Delta-G solvation = -4100.855130 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.100 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.05942 -48.17420 -41.10444 -40.43025 -38.45793 -37.65636 -35.47462 -32.85812 -31.97252 -30.26155 -28.83750 -26.35122 -25.61309 -24.55027 -23.76617 -23.05936 -21.52678 -20.23502 -19.40931 -19.28028 -18.74921 -18.63375 -18.25973 -17.32768 -16.99007 -16.42222 -16.11738 -15.80993 -15.69399 -15.56397 -15.14389 -15.01196 -14.61936 -14.49921 -14.31962 -14.15986 -13.92674 -13.88706 -13.76053 -13.50793 -13.34830 -13.26192 -12.99774 -12.90920 -12.44554 -12.36059 -12.25090 -12.08188 -11.76040 -11.57682 -11.25048 -10.95181 -10.70176 -10.42636 -10.02280 -8.63355 -4.79578 -0.02578 0.13333 0.72650 1.26867 1.60098 1.79157 1.83936 2.00881 2.07025 2.74711 3.07233 3.44693 3.51409 3.70576 3.78803 3.87870 3.92919 3.97644 4.02579 4.07334 4.14225 4.25429 4.34063 4.37758 4.39642 4.46367 4.65485 4.77154 4.80749 4.87144 4.99270 5.01693 5.04200 5.06430 5.14068 5.21600 5.29543 5.61061 5.63441 6.33747 6.61894 6.88222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.255 4.255 3 C 0.088 3.912 4 C -0.043 4.043 5 O -0.546 6.546 6 Si 0.775 3.225 7 N -0.559 5.559 8 C 0.315 3.685 9 N -0.681 5.681 10 C 0.151 3.849 11 H 0.082 0.918 12 C -0.114 4.114 13 C -0.106 4.106 14 C 0.073 3.927 15 H 0.073 0.927 16 O -0.387 6.387 17 C 0.398 3.602 18 F -0.220 7.220 19 F -0.219 7.219 20 C -0.137 4.137 21 C -0.128 4.128 22 S 0.111 5.889 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.398 0.602 28 H -0.321 1.321 29 H -0.274 1.274 30 H 0.419 0.581 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.205 0.795 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.911 -2.105 1.253 3.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.378 4.378 3 C -0.041 4.041 4 C -0.155 4.155 5 O -0.356 6.356 6 Si 0.681 3.319 7 N -0.286 5.286 8 C -0.056 4.056 9 N -0.321 5.321 10 C 0.046 3.954 11 H 0.100 0.900 12 C -0.152 4.152 13 C -0.144 4.144 14 C 0.016 3.984 15 H 0.091 0.909 16 O -0.309 6.309 17 C 0.307 3.693 18 F -0.202 7.202 19 F -0.201 7.201 20 C -0.175 4.175 21 C -0.167 4.167 22 S 0.360 5.640 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.106 0.894 26 H 0.119 0.881 27 H 0.250 0.750 28 H -0.249 1.249 29 H -0.200 1.200 30 H 0.258 0.742 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.222 0.778 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.403 -3.140 0.414 3.975 hybrid contribution -1.025 1.510 0.145 1.831 sum 1.378 -1.630 0.559 2.206 Atomic orbital electron populations 1.20063 0.85827 1.02878 1.02418 1.25389 1.02225 0.93277 1.16862 1.19126 0.86818 0.95937 1.02259 1.24030 0.92146 0.96780 1.02533 1.86544 1.32839 1.36668 1.79521 0.93040 0.86632 0.73722 0.78542 1.65641 1.16939 1.17275 1.28791 1.23445 0.92800 0.91177 0.98191 1.44096 1.01040 1.07502 1.79489 1.21280 0.99222 0.78175 0.96705 0.89960 1.21687 0.94761 0.95876 1.02918 1.21496 1.04248 0.94680 0.94012 1.22475 0.97088 0.79658 0.99155 0.90899 1.88436 1.77702 1.26386 1.38362 1.23838 0.72419 0.98319 0.74753 1.93044 1.46230 1.85430 1.95528 1.93041 1.74622 1.95804 1.56605 1.22067 0.97032 0.96150 1.02248 1.21952 1.03001 0.95135 0.96659 1.83829 0.96102 1.09903 1.74193 0.91675 0.91650 0.89362 0.88052 0.75047 1.24934 1.20017 0.74169 0.89118 0.89549 0.90153 0.89578 0.77842 0.90366 0.90913 0.90584 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.19 8.96 71.24 0.64 0.44 16 2 C -0.25 -1.76 6.50 24.57 0.16 -1.60 16 3 C 0.09 0.67 5.95 41.40 0.25 0.92 16 4 C -0.04 -0.14 2.82 71.24 0.20 0.07 16 5 O -0.55 -1.20 9.86 -148.98 -1.47 -2.67 16 6 Si 0.77 2.92 32.08 68.60 2.20 5.12 16 7 N -0.56 -4.17 8.95 -189.86 -1.70 -5.87 16 8 C 0.32 1.39 8.22 179.32 1.47 2.86 16 9 N -0.68 0.94 5.23 -330.40 -1.73 -0.78 16 10 C 0.15 -0.65 2.40 44.99 0.11 -0.54 16 11 H 0.08 -0.27 7.25 -2.39 -0.02 -0.29 16 12 C -0.11 0.82 5.39 30.59 0.16 0.98 16 13 C -0.11 0.59 5.57 30.59 0.17 0.76 16 14 C 0.07 -0.21 2.40 30.59 0.07 -0.13 16 15 H 0.07 -0.16 7.20 -2.39 -0.02 -0.18 16 16 O -0.39 0.49 10.29 -148.98 -1.53 -1.04 16 17 C 0.40 -1.34 6.26 113.37 0.71 -0.63 16 18 F -0.22 -0.14 16.63 44.97 0.75 0.61 16 19 F -0.22 -0.12 15.46 44.97 0.70 0.58 16 20 C -0.14 0.38 5.39 30.59 0.17 0.54 16 21 C -0.13 0.44 5.51 30.60 0.17 0.61 16 22 S 0.11 0.42 21.69 -56.49 -1.23 -0.80 16 23 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 24 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 25 H 0.09 0.25 6.61 -2.39 -0.02 0.24 16 26 H 0.10 -0.10 7.96 -2.39 -0.02 -0.12 16 27 H 0.40 -2.51 8.74 -74.06 -0.65 -3.15 16 28 H -0.32 -4.35 7.11 99.48 0.71 -3.65 16 29 H -0.27 -1.34 7.11 99.48 0.71 -0.63 16 30 H 0.42 -1.55 8.73 -92.71 -0.81 -2.36 16 31 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 32 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 33 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 34 H 0.09 -0.50 8.14 -2.38 -0.02 -0.52 16 35 H 0.21 -2.36 8.14 -2.38 -0.02 -2.38 16 36 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.07 -0.05 6.50 -2.39 -0.02 -0.06 16 38 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.07 -0.09 8.04 -2.39 -0.02 -0.11 16 Total: 0.00 -15.81 334.10 -0.05 -15.86 By element: Atomic # 1 Polarization: -14.97 SS G_CDS: -0.32 Total: -15.29 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 4.28 Total: 4.29 kcal Atomic # 7 Polarization: -3.23 SS G_CDS: -3.43 Total: -6.66 kcal Atomic # 8 Polarization: -0.71 SS G_CDS: -3.00 Total: -3.71 kcal Atomic # 9 Polarization: -0.26 SS G_CDS: 1.44 Total: 1.18 kcal Atomic # 14 Polarization: 2.92 SS G_CDS: 2.20 Total: 5.12 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -1.23 Total: -0.80 kcal Total: -15.81 -0.05 -15.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15100672_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.418 kcal (2) G-P(sol) polarization free energy of solvation -15.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds