Wall clock time and date at job start Mon Mar 8 2021 06:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86303 * 109.47046 * 2 1 4 4 C 1.50697 * 109.47014 * 239.99739 * 2 1 3 5 5 C 1.37983 * 120.32365 * 120.00272 * 4 2 1 6 6 N 1.32013 * 120.90063 * 179.97438 * 5 4 2 7 7 C 1.32334 * 121.64531 * 359.97438 * 6 5 4 8 8 N 1.39139 * 119.71943 * 179.97438 * 7 6 5 9 9 C 1.46504 * 120.00049 * 359.97438 * 8 7 6 10 10 H 1.09001 * 109.46891 * 325.00474 * 9 8 7 11 11 C 1.53006 * 109.46883 * 85.00040 * 9 8 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47060 * 300.00449 * 12 11 9 14 14 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 15 15 O 1.42903 * 109.46726 * 180.02562 * 13 12 11 16 16 C 1.42902 * 113.99825 * 149.99984 * 15 13 12 17 17 F 1.39900 * 109.47156 * 299.99648 * 16 15 13 18 18 F 1.39900 * 109.47303 * 59.99744 * 16 15 13 19 19 C 1.52996 * 109.47328 * 60.00126 * 13 12 11 20 20 C 1.52997 * 109.47417 * 205.00126 * 9 8 7 21 21 C 1.39348 * 120.56573 * 0.25890 * 7 6 5 22 22 F 1.35099 * 120.47342 * 179.72395 * 21 7 6 23 23 C 1.38445 * 119.05284 * 359.49137 * 21 7 6 24 24 H 0.96701 * 113.99664 * 59.99887 * 1 2 3 25 25 H 1.08996 * 109.46817 * 119.99703 * 2 1 3 26 26 H 1.48500 * 109.99902 * 298.67702 * 3 2 1 27 27 H 1.48495 * 110.00126 * 59.99886 * 3 2 1 28 28 H 1.07997 * 119.55207 * 359.97438 * 5 4 2 29 29 H 0.97003 * 120.00327 * 180.02562 * 8 7 6 30 30 H 1.08998 * 109.46505 * 59.99948 * 11 9 8 31 31 H 1.08996 * 109.46884 * 300.00829 * 11 9 8 32 32 H 1.09002 * 109.47153 * 180.02562 * 12 11 9 33 33 H 1.09001 * 109.46832 * 60.00321 * 12 11 9 34 34 H 1.09003 * 109.47326 * 180.02562 * 16 15 13 35 35 H 1.08992 * 109.47554 * 59.99639 * 19 13 12 36 36 H 1.09004 * 109.47108 * 179.97438 * 19 13 12 37 37 H 1.09002 * 109.47045 * 60.00127 * 20 9 8 38 38 H 1.09001 * 109.47375 * 300.00052 * 20 9 8 39 39 H 1.08002 * 120.75858 * 180.24228 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7251 -0.0464 -2.1431 6 7 3.1718 -0.6578 -3.2245 7 6 2.8800 -1.9236 -3.4769 8 7 3.3719 -2.5283 -4.6294 9 6 4.2086 -1.7638 -5.5577 10 1 3.8684 -0.7286 -5.5852 11 6 5.6643 -1.8100 -5.0886 12 6 6.5380 -1.0111 -6.0577 13 6 6.4338 -1.6189 -7.4579 14 1 6.7742 -2.6541 -7.4308 15 8 7.2504 -0.8731 -8.3628 16 6 7.7774 -1.6466 -9.4426 17 9 8.5670 -2.6826 -8.9323 18 9 6.7234 -2.1870 -10.1871 19 6 4.9783 -1.5727 -7.9270 20 6 4.1045 -2.3723 -6.9576 21 6 2.0794 -2.6545 -2.6012 22 9 1.7782 -3.9451 -2.8636 23 6 1.6012 -2.0406 -1.4562 24 1 -0.3933 0.4417 -0.7651 25 1 1.7923 -0.5138 0.8900 26 1 1.5880 2.4585 -1.2243 27 1 1.5615 2.4679 1.2084 28 1 2.9845 0.9877 -1.9704 29 1 3.1603 -3.4559 -4.8186 30 1 6.0044 -2.8452 -5.0610 31 1 5.7384 -1.3766 -4.0912 32 1 7.5751 -1.0443 -5.7237 33 1 6.1977 0.0241 -6.0847 34 1 8.3859 -1.0086 -10.0836 35 1 4.6379 -0.5376 -7.9540 36 1 4.9042 -2.0054 -8.9247 37 1 3.0675 -2.3394 -7.2918 38 1 4.4447 -3.4075 -6.9302 39 1 0.9817 -2.5823 -0.7567 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15100672_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:13:24 Heat of formation + Delta-G solvation = -192.250272 kcal Electronic energy + Delta-G solvation = -27128.584476 eV Core-core repulsion = 22622.493750 eV Total energy + Delta-G solvation = -4506.090725 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.118 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.06587 -49.95999 -48.18070 -41.50114 -40.33151 -38.48688 -37.72151 -35.51102 -33.25848 -31.98738 -31.79140 -29.56952 -26.71014 -26.09483 -24.95718 -23.87088 -23.17965 -22.58457 -21.27424 -19.45490 -19.26195 -18.75150 -18.64874 -18.51561 -18.35216 -17.63630 -17.02364 -16.76543 -16.17377 -15.98325 -15.96564 -15.69131 -15.48937 -15.21971 -15.05844 -14.89656 -14.57297 -14.38262 -14.31598 -14.25415 -13.93849 -13.78906 -13.50121 -13.33168 -13.21700 -12.72111 -12.65148 -12.38482 -12.27396 -12.15987 -12.05894 -11.49826 -11.34783 -10.97658 -10.76141 -10.62501 -10.52903 -8.77937 -4.88855 -0.08239 0.10620 1.32098 1.63549 1.88221 2.00199 2.08332 2.53969 2.73847 3.02049 3.27389 3.43144 3.51207 3.55031 3.60196 3.72269 3.85573 3.86459 3.94296 3.97421 4.05171 4.08725 4.19770 4.32396 4.40075 4.42166 4.52687 4.63111 4.70299 4.74472 4.84332 4.98664 4.98788 5.07153 5.09565 5.17128 5.23482 5.42446 5.61745 5.96533 6.18197 6.50027 6.95356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.068 4.068 3 Si 0.765 3.235 4 C -0.203 4.203 5 C 0.148 3.852 6 N -0.523 5.523 7 C 0.384 3.616 8 N -0.711 5.711 9 C 0.160 3.840 10 H 0.086 0.914 11 C -0.118 4.118 12 C -0.104 4.104 13 C 0.074 3.926 14 H 0.069 0.931 15 O -0.388 6.388 16 C 0.398 3.602 17 F -0.221 7.221 18 F -0.218 7.218 19 C -0.134 4.134 20 C -0.119 4.119 21 C -0.038 4.038 22 F -0.142 7.142 23 C -0.041 4.041 24 H 0.386 0.614 25 H 0.129 0.871 26 H -0.277 1.277 27 H -0.301 1.301 28 H 0.183 0.817 29 H 0.415 0.585 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.206 0.794 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.785 1.797 -0.812 3.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.177 4.177 3 Si 0.670 3.330 4 C -0.209 4.209 5 C -0.009 4.009 6 N -0.240 5.240 7 C 0.146 3.854 8 N -0.343 5.343 9 C 0.055 3.945 10 H 0.104 0.896 11 C -0.157 4.157 12 C -0.142 4.142 13 C 0.018 3.982 14 H 0.088 0.912 15 O -0.309 6.309 16 C 0.307 3.693 17 F -0.203 7.203 18 F -0.200 7.200 19 C -0.172 4.172 20 C -0.157 4.157 21 C -0.065 4.065 22 F -0.121 7.121 23 C -0.067 4.067 24 H 0.236 0.764 25 H 0.147 0.853 26 H -0.203 1.203 27 H -0.229 1.229 28 H 0.200 0.800 29 H 0.253 0.747 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.223 0.777 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.313 2.959 -0.996 4.553 hybrid contribution -1.938 -1.806 -0.077 2.650 sum 1.375 1.153 -1.073 2.091 Atomic orbital electron populations 1.86586 1.18555 1.80344 1.50217 1.25040 0.83311 1.11627 0.97732 0.94185 0.90170 0.71741 0.76928 1.20900 1.04608 0.94705 1.00660 1.22701 0.91052 0.99930 0.87232 1.67370 1.27013 1.07315 1.22308 1.18561 0.90057 0.89248 0.87580 1.44701 1.54359 1.14849 1.20408 1.20981 0.89654 0.96463 0.87383 0.89550 1.21826 0.94014 1.00670 0.99203 1.21474 1.01056 1.00557 0.91153 1.22452 0.90265 0.95671 0.89819 0.91240 1.88438 1.66812 1.37508 1.38179 1.23853 0.80179 0.81232 0.84078 1.93042 1.74877 1.63917 1.88477 1.93038 1.61120 1.88326 1.77540 1.22040 0.93596 1.02058 0.99536 1.21720 1.00978 1.00084 0.92965 1.18150 1.07829 0.80932 0.99551 1.91465 1.92276 1.34277 1.94056 1.21422 0.96094 0.94757 0.94404 0.76426 0.85340 1.20314 1.22924 0.80044 0.74725 0.91601 0.90938 0.90544 0.90298 0.77745 0.90413 0.90637 0.90279 0.90624 0.82915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.26 12.78 -148.98 -1.90 -2.17 16 2 C -0.07 0.20 2.84 71.24 0.20 0.41 16 3 Si 0.77 -3.42 29.82 68.60 2.05 -1.38 16 4 C -0.20 0.29 5.40 -19.77 -0.11 0.18 16 5 C 0.15 -0.20 9.84 84.61 0.83 0.64 16 6 N -0.52 -1.13 9.20 -193.04 -1.78 -2.91 16 7 C 0.38 1.04 7.47 133.09 0.99 2.03 16 8 N -0.71 0.19 5.23 -324.27 -1.69 -1.51 16 9 C 0.16 -0.28 2.47 44.99 0.11 -0.17 16 10 H 0.09 0.05 7.54 -2.39 -0.02 0.03 16 11 C -0.12 0.23 5.51 30.60 0.17 0.40 16 12 C -0.10 0.20 5.57 30.59 0.17 0.37 16 13 C 0.07 -0.06 2.40 30.59 0.07 0.02 16 14 H 0.07 0.01 7.20 -2.39 -0.02 -0.01 16 15 O -0.39 -0.10 10.29 -148.98 -1.53 -1.63 16 16 C 0.40 -0.95 6.26 113.37 0.71 -0.24 16 17 F -0.22 -0.40 16.63 44.97 0.75 0.35 16 18 F -0.22 -0.24 15.46 44.97 0.70 0.46 16 19 C -0.13 0.25 5.40 30.61 0.17 0.41 16 20 C -0.12 0.40 5.39 30.61 0.17 0.57 16 21 C -0.04 -0.13 7.35 22.59 0.17 0.04 16 22 F -0.14 -0.71 16.65 44.97 0.75 0.04 16 23 C -0.04 -0.04 9.75 22.48 0.22 0.17 16 24 H 0.39 -1.89 8.70 -74.06 -0.64 -2.53 16 25 H 0.13 -0.62 7.96 -2.39 -0.02 -0.63 16 26 H -0.28 0.27 7.11 99.48 0.71 0.98 16 27 H -0.30 -1.11 7.11 99.48 0.71 -0.40 16 28 H 0.18 -1.14 4.88 -2.91 -0.01 -1.15 16 29 H 0.42 -0.84 8.07 -92.71 -0.75 -1.59 16 30 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 33 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.21 -2.22 8.14 -2.39 -0.02 -2.24 16 35 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.08 -0.04 6.50 -2.38 -0.02 -0.05 16 37 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 38 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 39 H 0.15 -0.04 8.06 -2.91 -0.02 -0.07 16 Total: 0.00 -13.76 329.96 0.96 -12.80 By element: Atomic # 1 Polarization: -8.65 SS G_CDS: -0.24 Total: -8.89 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 3.87 Total: 4.83 kcal Atomic # 7 Polarization: -0.94 SS G_CDS: -3.47 Total: -4.41 kcal Atomic # 8 Polarization: -0.36 SS G_CDS: -3.44 Total: -3.80 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 2.19 Total: 0.85 kcal Atomic # 14 Polarization: -3.42 SS G_CDS: 2.05 Total: -1.38 kcal Total: -13.76 0.96 -12.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15100672_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.449 kcal (2) G-P(sol) polarization free energy of solvation -13.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds