Wall clock time and date at job start Mon Mar 8 2021 06:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 116.99456 * 2 1 4 4 O 1.20825 * 120.00394 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99750 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.85116 * 311.19838 * 5 3 2 7 7 C 1.53778 * 113.69164 * 82.46649 * 5 3 2 8 8 C 1.53784 * 87.08221 * 139.99283 * 7 5 3 9 9 C 1.53002 * 113.69088 * 89.12893 * 8 7 5 10 10 N 1.46496 * 109.47316 * 69.94110 * 9 8 7 11 11 C 1.38406 * 119.99951 * 178.38257 * 10 9 8 12 12 N 1.32491 * 119.21926 * 359.72766 * 11 10 9 13 13 C 1.32275 * 120.74357 * 179.72173 * 12 11 10 14 14 C 1.38610 * 119.19369 * 0.54437 * 13 12 11 15 15 C 1.50692 * 120.71955 * 179.75378 * 14 13 12 16 16 O 1.42900 * 109.47323 * 244.97539 * 15 14 13 17 17 Si 1.86300 * 109.47257 * 4.97727 * 15 14 13 18 18 C 1.38604 * 118.55826 * 359.73094 * 14 13 12 19 19 N 1.32275 * 119.19691 * 359.97438 * 18 14 13 20 20 O 1.42904 * 113.61117 * 220.01800 * 8 7 5 21 21 C 1.42902 * 113.99826 * 160.40752 * 20 8 7 22 22 C 1.53777 * 87.07907 * 334.56369 * 8 7 5 23 23 H 1.09000 * 109.46534 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46980 * 299.99480 * 1 2 3 25 25 H 1.08989 * 109.46947 * 60.00189 * 1 2 3 26 26 H 1.08999 * 113.61735 * 25.44529 * 7 5 3 27 27 H 1.09005 * 113.61251 * 254.54174 * 7 5 3 28 28 H 1.09004 * 109.46591 * 189.93930 * 9 8 7 29 29 H 1.08994 * 109.47232 * 309.93964 * 9 8 7 30 30 H 0.97004 * 120.00020 * 358.38038 * 10 9 8 31 31 H 1.07996 * 120.40600 * 180.25201 * 13 12 11 32 32 H 1.09009 * 109.47329 * 124.97390 * 15 14 13 33 33 H 0.96695 * 113.99767 * 59.99927 * 16 15 14 34 34 H 1.48497 * 110.00365 * 58.68016 * 17 15 14 35 35 H 1.48503 * 110.00395 * 180.02562 * 17 15 14 36 36 H 1.07999 * 120.39712 * 180.02562 * 18 14 13 37 37 H 1.08999 * 109.46821 * 185.03003 * 21 20 8 38 38 H 1.09001 * 109.46910 * 305.02890 * 21 20 8 39 39 H 1.08999 * 109.47076 * 65.02983 * 21 20 8 40 40 H 1.09008 * 113.60963 * 139.98128 * 22 8 7 41 41 H 1.08991 * 113.61879 * 270.88425 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 4.0239 0.6363 0.7549 7 6 4.1924 1.1233 -1.3969 8 6 5.1819 2.2268 -0.9868 9 6 6.4452 1.6974 -0.3049 10 7 7.2709 0.9909 -1.2873 11 6 8.4875 0.4506 -0.9082 12 7 8.8926 0.5862 0.3459 13 6 10.0474 0.0772 0.7423 14 6 10.8406 -0.5942 -0.1749 15 6 12.1650 -1.1828 0.2380 16 8 13.2209 -0.5092 -0.4500 17 14 12.3904 -0.9765 2.0757 18 6 10.3891 -0.7129 -1.4800 19 7 9.2215 -0.1856 -1.8092 20 8 5.4649 3.1592 -2.0322 21 6 6.0033 4.4009 -1.5734 22 6 4.1076 2.7144 -0.0005 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 3.5256 1.4144 -2.2085 27 1 4.6630 0.1539 -1.5614 28 1 7.0098 2.5315 0.1117 29 1 6.1660 1.0119 0.4952 30 1 6.9650 0.9017 -2.2036 31 1 10.3704 0.1874 1.7669 32 1 12.1857 -2.2433 -0.0138 33 1 13.2630 0.4404 -0.2726 34 1 11.2812 -1.6455 2.8018 35 1 13.6932 -1.5524 2.4956 36 1 10.9830 -1.2303 -2.2188 37 1 6.1069 5.0851 -2.4155 38 1 5.3328 4.8358 -0.8322 39 1 6.9806 4.2287 -1.1227 40 1 4.5098 3.0296 0.9624 41 1 3.4176 3.4404 -0.4303 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15102700_12175864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:39:41 Heat of formation + Delta-G solvation = -62.048661 kcal Electronic energy + Delta-G solvation = -25704.276679 eV Core-core repulsion = 21781.177410 eV Total energy + Delta-G solvation = -3923.099269 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.31225 -41.97605 -40.67352 -38.10302 -37.72598 -36.89348 -36.37111 -34.72823 -32.60238 -29.84590 -28.51231 -28.15468 -26.85594 -26.20267 -25.94118 -25.09781 -23.07207 -22.10428 -20.25807 -19.37597 -19.17233 -18.61678 -18.18329 -17.96776 -17.51827 -16.85339 -16.71332 -16.53661 -16.31667 -15.99003 -15.83363 -15.54587 -15.39839 -15.25411 -14.57144 -14.48509 -14.34709 -14.11074 -14.00135 -13.57747 -13.26020 -13.14351 -12.89817 -12.74302 -12.68412 -12.24589 -12.10132 -11.89834 -11.88281 -11.76533 -11.59389 -11.45867 -11.33651 -10.67423 -10.52966 -10.03337 -9.11144 -4.97326 0.06505 0.14634 1.00651 1.34402 1.64477 1.66679 1.72356 2.01742 2.67078 2.80646 3.09156 3.14067 3.27826 3.37072 3.42386 3.57841 3.68675 3.73383 3.83123 3.90192 4.09984 4.23533 4.25819 4.26343 4.31706 4.41687 4.49231 4.55506 4.58208 4.61123 4.63533 4.66888 4.75040 4.77357 4.86289 4.89648 5.03738 5.22051 5.29450 5.73132 5.98776 6.12330 6.37923 6.60291 6.80690 7.25977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.472 3.528 4 O -0.536 6.536 5 C -0.104 4.104 6 H 0.155 0.845 7 C -0.100 4.100 8 C 0.082 3.918 9 C 0.140 3.860 10 N -0.686 5.686 11 C 0.554 3.446 12 N -0.575 5.575 13 C 0.197 3.803 14 C -0.288 4.288 15 C -0.048 4.048 16 O -0.555 6.555 17 Si 0.769 3.231 18 C 0.212 3.788 19 N -0.591 5.591 20 O -0.382 6.382 21 C 0.024 3.976 22 C -0.130 4.130 23 H 0.128 0.872 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.419 0.581 31 H 0.191 0.809 32 H 0.113 0.887 33 H 0.395 0.605 34 H -0.282 1.282 35 H -0.298 1.298 36 H 0.180 0.820 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.106 0.894 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.040 0.709 3.117 3.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.316 3.684 4 O -0.426 6.426 5 C -0.123 4.123 6 H 0.172 0.828 7 C -0.137 4.137 8 C 0.042 3.958 9 C 0.015 3.985 10 N -0.323 5.323 11 C 0.197 3.803 12 N -0.298 5.298 13 C 0.030 3.970 14 C -0.296 4.296 15 C -0.160 4.160 16 O -0.363 6.363 17 Si 0.675 3.325 18 C 0.045 3.955 19 N -0.314 5.314 20 O -0.301 6.301 21 C -0.071 4.071 22 C -0.168 4.168 23 H 0.147 0.853 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.121 0.879 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.257 0.743 31 H 0.207 0.793 32 H 0.130 0.870 33 H 0.244 0.756 34 H -0.209 1.209 35 H -0.226 1.226 36 H 0.197 0.803 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.124 0.876 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.057 0.494 3.309 3.347 hybrid contribution 0.138 -0.598 -0.508 0.796 sum 0.081 -0.104 2.802 2.805 Atomic orbital electron populations 1.23536 0.74979 1.05633 1.02487 1.86519 1.24805 1.33029 1.83457 1.23903 0.92415 0.81057 0.71037 1.90676 1.67845 1.37447 1.46598 1.22462 0.86262 1.01428 1.02129 0.82761 1.22996 0.96457 0.99348 0.94918 1.23034 0.92293 0.91149 0.89349 1.21553 0.89323 0.96948 0.90657 1.43968 1.15923 1.58350 1.14053 1.19557 0.87577 0.87660 0.85488 1.67951 1.18671 1.26721 1.16435 1.23188 0.87027 0.86929 0.99858 1.21765 1.01804 1.09119 0.96936 1.24822 0.83354 0.98251 1.09549 1.86483 1.50373 1.27245 1.72189 0.93980 0.76747 0.89779 0.71995 1.23122 0.88539 0.88869 0.94988 1.67982 1.09166 1.16877 1.37340 1.87958 1.83955 1.26131 1.32096 1.22870 0.97800 0.85001 1.01462 1.23501 0.96772 0.94967 1.01561 0.85349 0.91904 0.92099 0.88958 0.87915 0.90345 0.88957 0.74329 0.79261 0.86984 0.75560 1.20863 1.22577 0.80317 0.89007 0.92657 0.93511 0.87601 0.88609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.36 -0.94 10.57 -51.42 -0.54 -1.48 16 3 C 0.47 1.69 7.49 71.24 0.53 2.23 16 4 O -0.54 -5.36 15.65 21.97 0.34 -5.01 16 5 C -0.10 0.31 3.91 -11.01 -0.04 0.27 16 6 H 0.15 -1.18 7.60 -2.39 -0.02 -1.20 16 7 C -0.10 0.29 7.00 31.12 0.22 0.51 16 8 C 0.08 -0.23 0.77 -10.27 -0.01 -0.24 16 9 C 0.14 -0.45 4.80 86.38 0.41 -0.03 16 10 N -0.69 -0.35 5.62 -351.05 -1.97 -2.32 16 11 C 0.55 2.27 8.43 261.49 2.20 4.47 16 12 N -0.57 -1.41 9.59 -197.99 -1.90 -3.30 16 13 C 0.20 -0.31 9.92 84.72 0.84 0.54 16 14 C -0.29 0.43 5.36 -19.69 -0.11 0.33 16 15 C -0.05 0.18 2.83 71.23 0.20 0.38 16 16 O -0.56 1.45 12.85 -148.98 -1.91 -0.46 16 17 Si 0.77 -3.97 29.88 68.60 2.05 -1.92 16 18 C 0.21 0.35 10.99 84.71 0.93 1.28 16 19 N -0.59 -3.21 10.46 -197.99 -2.07 -5.28 16 20 O -0.38 -0.41 10.60 -148.98 -1.58 -1.99 16 21 C 0.02 -0.06 10.60 113.37 1.20 1.15 16 22 C -0.13 0.38 5.73 31.12 0.18 0.56 16 23 H 0.13 -0.84 8.14 -2.39 -0.02 -0.86 16 24 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 25 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 26 H 0.09 -0.03 8.10 -2.39 -0.02 -0.05 16 27 H 0.10 -0.48 8.10 -2.38 -0.02 -0.50 16 28 H 0.08 -0.21 7.12 -2.38 -0.02 -0.23 16 29 H 0.09 -0.45 7.30 -2.39 -0.02 -0.47 16 30 H 0.42 0.29 8.59 -92.71 -0.80 -0.51 16 31 H 0.19 -1.45 5.07 -2.91 -0.01 -1.47 16 32 H 0.11 -0.34 7.96 -2.38 -0.02 -0.36 16 33 H 0.39 -4.01 8.70 -74.06 -0.64 -4.66 16 34 H -0.28 0.16 7.11 99.48 0.71 0.86 16 35 H -0.30 -0.86 7.11 99.48 0.71 -0.15 16 36 H 0.18 -0.28 8.06 -2.91 -0.02 -0.30 16 37 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.05 -0.22 7.32 -2.39 -0.02 -0.23 16 39 H 0.05 -0.13 7.13 -2.39 -0.02 -0.15 16 40 H 0.11 -0.68 8.10 -2.38 -0.02 -0.70 16 41 H 0.10 0.13 7.44 -2.39 -0.02 0.11 16 Total: 0.00 -20.32 346.95 -0.15 -20.47 By element: Atomic # 1 Polarization: -10.96 SS G_CDS: -0.32 Total: -11.28 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 7.76 Total: 12.60 kcal Atomic # 7 Polarization: -4.97 SS G_CDS: -5.94 Total: -10.91 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -3.69 Total: -8.95 kcal Atomic # 14 Polarization: -3.97 SS G_CDS: 2.05 Total: -1.92 kcal Total: -20.32 -0.15 -20.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15102700_12175864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.584 kcal (2) G-P(sol) polarization free energy of solvation -20.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds