Wall clock time and date at job start Mon Mar 8 2021 06:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 117.00371 * 2 1 4 4 O 1.20830 * 119.99797 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00391 * 180.02562 * 3 2 1 6 6 H 1.09002 * 112.85620 * 48.79736 * 5 3 2 7 7 C 1.53782 * 113.61762 * 179.97438 * 5 3 2 8 8 C 1.53780 * 87.08200 * 139.97823 * 7 5 3 9 9 C 1.53001 * 113.61401 * 89.12100 * 8 7 5 10 10 N 1.46495 * 109.47616 * 70.64627 * 9 8 7 11 11 C 1.38995 * 120.00057 * 175.92845 * 10 9 8 12 12 N 1.32399 * 119.70611 * 179.72295 * 11 10 9 13 13 C 1.31978 * 121.62157 * 179.97438 * 12 11 10 14 14 C 1.38022 * 120.85939 * 359.97438 * 13 12 11 15 15 C 1.50694 * 120.33543 * 180.02562 * 14 13 12 16 16 O 1.42900 * 109.46866 * 120.00301 * 15 14 13 17 17 Si 1.86305 * 109.47244 * 0.02562 * 15 14 13 18 18 C 1.38884 * 119.32619 * 0.02562 * 14 13 12 19 19 C 1.38297 * 118.50982 * 359.72996 * 18 14 13 20 20 O 1.42898 * 113.61210 * 219.93321 * 8 7 5 21 21 C 1.42899 * 114.00012 * 163.33033 * 20 8 7 22 22 C 1.53780 * 87.17588 * 334.52467 * 8 7 5 23 23 H 1.09004 * 109.47182 * 299.99980 * 1 2 3 24 24 H 1.08999 * 109.47233 * 60.00397 * 1 2 3 25 25 H 1.09006 * 109.47214 * 180.02562 * 1 2 3 26 26 H 1.09000 * 113.61541 * 25.42566 * 7 5 3 27 27 H 1.08997 * 113.69113 * 254.53644 * 7 5 3 28 28 H 1.09003 * 109.46360 * 310.64090 * 9 8 7 29 29 H 1.09002 * 109.46614 * 190.65142 * 9 8 7 30 30 H 0.97004 * 119.99815 * 355.64379 * 10 9 8 31 31 H 1.08001 * 119.56864 * 179.97438 * 13 12 11 32 32 H 1.09000 * 109.47265 * 240.00439 * 15 14 13 33 33 H 0.96701 * 113.99699 * 179.97438 * 16 15 14 34 34 H 1.48505 * 109.99648 * 60.00018 * 17 15 14 35 35 H 1.48494 * 109.99871 * 181.31749 * 17 15 14 36 36 H 1.08001 * 120.74640 * 179.97438 * 18 14 13 37 37 H 1.07997 * 120.45858 * 180.28659 * 19 18 14 38 38 H 1.09001 * 109.47431 * 176.44398 * 21 20 8 39 39 H 1.09001 * 109.47585 * 296.44771 * 21 20 8 40 40 H 1.09005 * 109.47049 * 56.44700 * 21 20 8 41 41 H 1.08997 * 113.61312 * 140.02631 * 22 8 7 42 42 H 1.08996 * 113.61174 * 270.93106 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0234 0.6363 -0.7566 7 6 4.1078 2.7141 -0.0011 8 6 5.1814 2.2269 0.9862 9 6 6.4442 1.6953 0.3053 10 7 7.1815 2.8098 -0.2949 11 6 8.4124 2.5833 -0.8997 12 7 9.0712 3.5939 -1.4452 13 6 10.2425 3.4219 -2.0287 14 6 10.8260 2.1726 -2.0904 15 6 12.1641 1.9898 -2.7589 16 8 13.1025 1.4733 -1.8131 17 14 12.7681 3.6319 -3.3989 18 6 10.1675 1.0858 -1.5300 19 6 8.9441 1.2976 -0.9209 20 8 5.4651 3.1608 2.0300 21 6 6.1587 2.5947 3.1437 22 6 4.1928 1.1236 1.3987 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.4175 3.4405 0.4277 27 1 4.5107 3.0301 -0.9633 28 1 6.1656 0.9834 -0.4716 29 1 7.0737 1.1990 1.0440 30 1 6.8089 3.7051 -0.2740 31 1 10.7509 4.2697 -2.4635 32 1 12.0630 1.2909 -3.5892 33 1 13.9876 1.3299 -2.1753 34 1 12.9103 4.5933 -2.2760 35 1 14.0720 3.4598 -4.0883 36 1 10.6029 0.0981 -1.5656 37 1 8.4069 0.4758 -0.4710 38 1 6.3921 3.3793 3.8635 39 1 5.5302 1.8413 3.6185 40 1 7.0832 2.1315 2.7987 41 1 4.6642 0.1550 1.5654 42 1 3.5257 1.4159 2.2096 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15102700_13915762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:39:45 Heat of formation + Delta-G solvation = -78.270565 kcal Electronic energy + Delta-G solvation = -25513.832103 eV Core-core repulsion = 21655.455311 eV Total energy + Delta-G solvation = -3858.376792 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.21922 -41.34176 -40.58727 -38.05417 -37.72096 -36.86538 -36.31469 -33.50242 -31.82201 -29.73382 -28.40833 -28.09210 -26.85272 -26.03399 -25.24149 -24.63273 -22.37469 -22.01289 -20.08853 -19.22733 -18.72356 -18.49475 -18.24349 -17.86424 -17.51528 -16.71628 -16.65878 -16.51623 -16.16941 -15.91957 -15.63610 -15.43437 -15.18427 -14.92406 -14.45101 -14.34356 -14.09002 -13.97473 -13.91521 -13.75553 -13.57785 -13.24853 -12.99567 -12.70127 -12.59779 -12.37264 -12.07593 -12.01110 -11.86308 -11.59291 -11.38960 -11.17869 -10.73276 -10.65742 -10.56647 -10.28653 -8.67561 -4.91130 0.24863 0.43646 1.03563 1.33970 1.60243 1.64561 1.96969 1.99523 2.76551 2.81984 3.15873 3.21217 3.35969 3.46109 3.46607 3.63692 3.86599 3.89416 4.06053 4.12491 4.13613 4.25651 4.27784 4.29782 4.34369 4.40132 4.48987 4.51853 4.55712 4.58760 4.64826 4.69181 4.78748 4.83009 4.85395 4.89331 5.03652 5.07268 5.30973 5.31620 5.53126 6.00190 6.15245 6.51467 6.62847 6.64283 7.16096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.470 3.530 4 O -0.540 6.540 5 C -0.102 4.102 6 H 0.161 0.839 7 C -0.105 4.105 8 C 0.083 3.917 9 C 0.123 3.877 10 N -0.716 5.716 11 C 0.395 3.605 12 N -0.567 5.567 13 C 0.144 3.856 14 C -0.200 4.200 15 C -0.062 4.062 16 O -0.559 6.559 17 Si 0.747 3.253 18 C -0.012 4.012 19 C -0.239 4.239 20 O -0.386 6.386 21 C 0.024 3.976 22 C -0.127 4.127 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.130 0.870 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.406 0.594 31 H 0.162 0.838 32 H 0.098 0.902 33 H 0.394 0.606 34 H -0.304 1.304 35 H -0.282 1.282 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.119 0.881 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.061 -6.973 -1.616 7.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.314 3.686 4 O -0.430 6.430 5 C -0.121 4.121 6 H 0.179 0.821 7 C -0.143 4.143 8 C 0.043 3.957 9 C -0.001 4.001 10 N -0.348 5.348 11 C 0.159 3.841 12 N -0.285 5.285 13 C -0.013 4.013 14 C -0.205 4.205 15 C -0.173 4.173 16 O -0.369 6.369 17 Si 0.653 3.347 18 C -0.037 4.037 19 C -0.264 4.264 20 O -0.305 6.305 21 C -0.072 4.072 22 C -0.165 4.165 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.149 0.851 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.103 0.897 30 H 0.241 0.759 31 H 0.179 0.821 32 H 0.116 0.884 33 H 0.245 0.755 34 H -0.232 1.232 35 H -0.209 1.209 36 H 0.167 0.833 37 H 0.174 0.826 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.138 0.862 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.723 -5.223 -1.080 5.382 hybrid contribution 0.873 -0.882 0.587 1.373 sum 0.150 -6.105 -0.494 6.127 Atomic orbital electron populations 1.23533 0.75079 1.05677 1.02361 1.86507 1.24675 1.32859 1.83461 1.23978 0.92553 0.81050 0.71008 1.90691 1.67966 1.37648 1.46663 1.22519 0.86110 1.00822 1.02619 0.82147 1.23021 0.96081 0.95224 0.99942 1.23018 0.92572 0.91068 0.89077 1.21796 0.91329 0.89020 0.97997 1.44335 1.17551 1.11841 1.61034 1.18597 0.86674 0.89584 0.89247 1.67128 1.10784 1.34376 1.16175 1.22349 0.90082 0.95884 0.92970 1.20123 0.97858 0.94891 1.07616 1.24611 0.88581 1.09735 0.94324 1.86540 1.24587 1.85798 1.39972 0.94376 0.83493 0.75050 0.81735 1.21419 0.92242 0.99430 0.90643 1.21658 0.99221 0.96755 1.08717 1.87991 1.77450 1.36070 1.28974 1.22875 0.96045 1.00099 0.88211 1.23522 0.97178 1.01181 0.94600 0.92217 0.92122 0.85145 0.89535 0.88678 0.88008 0.89743 0.75856 0.82106 0.88396 0.75527 1.23167 1.20921 0.83328 0.82585 0.89576 0.92430 0.93132 0.86241 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.43 10.56 -51.35 -0.54 -0.97 16 3 C 0.47 1.36 7.49 71.23 0.53 1.90 16 4 O -0.54 -5.65 15.65 21.95 0.34 -5.30 16 5 C -0.10 0.44 3.91 -10.92 -0.04 0.40 16 6 H 0.16 -1.65 7.60 -2.39 -0.02 -1.66 16 7 C -0.11 0.15 6.78 31.12 0.21 0.36 16 8 C 0.08 -0.32 0.77 -10.27 -0.01 -0.33 16 9 C 0.12 -0.75 4.00 86.38 0.35 -0.41 16 10 N -0.72 0.07 5.64 -345.07 -1.95 -1.88 16 11 C 0.40 1.49 7.65 133.07 1.02 2.51 16 12 N -0.57 -4.37 10.39 -193.26 -2.01 -6.38 16 13 C 0.14 0.73 9.84 84.62 0.83 1.56 16 14 C -0.20 -0.59 5.43 -19.76 -0.11 -0.69 16 15 C -0.06 0.05 2.83 71.23 0.20 0.25 16 16 O -0.56 -0.88 12.75 -148.98 -1.90 -2.78 16 17 Si 0.75 -0.78 29.82 68.60 2.05 1.26 16 18 C -0.01 -0.01 9.77 22.44 0.22 0.20 16 19 C -0.24 -0.06 9.31 22.50 0.21 0.15 16 20 O -0.39 -0.52 10.59 -148.98 -1.58 -2.09 16 21 C 0.02 -0.07 10.62 113.37 1.20 1.14 16 22 C -0.13 0.80 6.25 31.22 0.20 0.99 16 23 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 24 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 25 H 0.13 -1.00 8.14 -2.38 -0.02 -1.02 16 26 H 0.09 0.37 7.44 -2.39 -0.02 0.35 16 27 H 0.09 -0.24 8.10 -2.39 -0.02 -0.26 16 28 H 0.10 -1.06 7.26 -2.39 -0.02 -1.08 16 29 H 0.08 -0.65 6.43 -2.39 -0.02 -0.67 16 30 H 0.41 0.84 8.59 -92.71 -0.80 0.04 16 31 H 0.16 0.27 4.88 -2.91 -0.01 0.26 16 32 H 0.10 -0.53 7.96 -2.39 -0.02 -0.55 16 33 H 0.39 -2.52 8.74 -74.06 -0.65 -3.16 16 34 H -0.30 -2.21 7.11 99.48 0.71 -1.50 16 35 H -0.28 -0.71 7.11 99.48 0.71 -0.01 16 36 H 0.15 -0.34 8.06 -2.91 -0.02 -0.36 16 37 H 0.16 -0.88 6.70 -2.91 -0.02 -0.90 16 38 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.06 -0.31 7.66 -2.39 -0.02 -0.33 16 40 H 0.05 -0.21 6.68 -2.38 -0.02 -0.22 16 41 H 0.12 -1.38 8.10 -2.39 -0.02 -1.40 16 42 H 0.09 -0.30 8.10 -2.39 -0.02 -0.32 16 Total: 0.00 -22.22 349.68 0.08 -22.14 By element: Atomic # 1 Polarization: -12.83 SS G_CDS: -0.34 Total: -13.18 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 6.01 Total: 9.17 kcal Atomic # 7 Polarization: -4.30 SS G_CDS: -3.96 Total: -8.26 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -3.68 Total: -11.15 kcal Atomic # 14 Polarization: -0.78 SS G_CDS: 2.05 Total: 1.26 kcal Total: -22.22 0.08 -22.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15102700_13915762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.128 kcal (2) G-P(sol) polarization free energy of solvation -22.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds