Wall clock time and date at job start Mon Mar 8 2021 06:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34223 * 117.00032 * 2 1 4 4 O 1.20826 * 120.00045 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99830 * 180.02562 * 3 2 1 6 6 H 1.09003 * 112.84685 * 311.19559 * 5 3 2 7 7 C 1.53781 * 113.61491 * 82.50039 * 5 3 2 8 8 C 1.53782 * 87.08083 * 139.98274 * 7 5 3 9 9 C 1.52996 * 113.61479 * 89.11650 * 8 7 5 10 10 N 1.46496 * 109.47286 * 77.50517 * 9 8 7 11 11 C 1.38607 * 120.00024 * 175.28279 * 10 9 8 12 12 N 1.29691 * 124.94892 * 0.02562 * 11 10 9 13 13 C 1.32119 * 116.86311 * 179.97438 * 12 11 10 14 14 C 1.33324 * 114.58401 * 0.02562 * 13 12 11 15 15 C 1.50699 * 125.95438 * 180.02562 * 14 13 12 16 16 O 1.42901 * 109.47172 * 299.99372 * 15 14 13 17 17 Si 1.86301 * 109.47380 * 179.97438 * 15 14 13 18 18 S 1.70964 * 124.95043 * 179.97438 * 11 10 9 19 19 O 1.42902 * 113.68954 * 220.01314 * 8 7 5 20 20 C 1.42901 * 113.99975 * 164.92538 * 19 8 7 21 21 C 1.53777 * 113.61368 * 180.02562 * 5 3 2 22 22 H 1.09004 * 109.46990 * 59.99943 * 1 2 3 23 23 H 1.08996 * 109.47468 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47190 * 300.00396 * 1 2 3 25 25 H 1.08996 * 113.61278 * 25.43516 * 7 5 3 26 26 H 1.09002 * 113.61379 * 254.53197 * 7 5 3 27 27 H 1.08999 * 109.47430 * 317.50058 * 9 8 7 28 28 H 1.09001 * 109.47057 * 197.50582 * 9 8 7 29 29 H 0.96996 * 119.99781 * 355.28452 * 10 9 8 30 30 H 1.08000 * 122.70896 * 179.97438 * 13 12 11 31 31 H 1.08997 * 109.47013 * 59.99278 * 15 14 13 32 32 H 0.96698 * 113.99815 * 300.00498 * 16 15 14 33 33 H 1.48495 * 110.00197 * 179.97438 * 17 15 14 34 34 H 1.48507 * 109.99778 * 301.31807 * 17 15 14 35 35 H 1.08996 * 109.47114 * 184.19919 * 20 19 8 36 36 H 1.08999 * 109.46857 * 304.19521 * 20 19 8 37 37 H 1.08993 * 109.47507 * 64.19257 * 20 19 8 38 38 H 1.08998 * 113.61956 * 105.46990 * 21 5 3 39 39 H 1.09006 * 113.68804 * 334.57282 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0240 0.6360 0.7550 7 6 4.1907 1.1236 -1.3978 8 6 5.1808 2.2268 -0.9886 9 6 6.4440 1.6951 -0.3086 10 7 7.3505 1.1482 -1.3213 11 6 8.6077 0.6950 -0.9537 12 7 9.0787 0.7092 0.2546 13 6 10.3004 0.2361 0.4247 14 6 10.8879 -0.1968 -0.6911 15 6 12.2723 -0.7838 -0.7917 16 8 13.2306 0.1763 -0.3423 17 14 12.6284 -1.2348 -2.5639 18 16 9.7632 0.0347 -2.0270 19 8 5.4637 3.1606 -2.0327 20 6 6.0968 4.3604 -1.5836 21 6 4.1079 2.7141 0.0001 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 3.5227 1.4151 -2.2083 26 1 4.6609 0.1543 -1.5634 27 1 6.1735 0.9109 0.3984 28 1 6.9402 2.5075 0.2224 29 1 7.0707 1.1033 -2.2489 30 1 10.7845 0.2034 1.3896 31 1 12.3341 -1.6772 -0.1703 32 1 13.2316 0.9986 -0.8510 33 1 13.9910 -1.8142 -2.6766 34 1 11.6196 -2.2090 -3.0526 35 1 6.2102 5.0472 -2.4224 36 1 5.4846 4.8273 -0.8120 37 1 7.0782 4.1220 -1.1739 38 1 4.5114 3.0284 0.9626 39 1 3.4181 3.4417 -0.4277 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15102700_15704118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:39:48 Heat of formation + Delta-G solvation = -71.599076 kcal Electronic energy + Delta-G solvation = -24054.513814 eV Core-core repulsion = 20285.578566 eV Total energy + Delta-G solvation = -3768.935248 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.22114 -40.91952 -40.43112 -37.95650 -37.72304 -36.87673 -36.24363 -31.55878 -29.90441 -28.58867 -28.14430 -26.86988 -26.30947 -25.61702 -24.17274 -22.16263 -20.87715 -20.44124 -19.54262 -19.07317 -18.20386 -18.07044 -17.51805 -17.25494 -16.75042 -16.59143 -16.28511 -16.12091 -15.87296 -15.73263 -15.50662 -15.29020 -14.81718 -14.52985 -14.33303 -14.10357 -13.95413 -13.53496 -13.26681 -12.97457 -12.83904 -12.74062 -12.64972 -12.44803 -12.07964 -12.00769 -11.87988 -11.59237 -11.45989 -11.25134 -10.82412 -10.67542 -10.27873 -10.15220 -8.73864 -5.09318 -0.04644 0.02728 0.68758 1.01208 1.28609 1.59045 1.64787 1.89927 1.98711 2.04978 2.70455 3.12762 3.22896 3.35200 3.37344 3.54137 3.74649 3.87815 3.95317 4.09682 4.24012 4.26528 4.31936 4.42278 4.49104 4.50439 4.55667 4.60251 4.63131 4.67111 4.73005 4.76636 4.84803 4.90037 5.01184 5.06948 5.29805 5.76999 6.04546 6.15832 6.60654 6.74114 6.99518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.471 3.529 4 O -0.537 6.537 5 C -0.106 4.106 6 H 0.154 0.846 7 C -0.097 4.097 8 C 0.084 3.916 9 C 0.136 3.864 10 N -0.679 5.679 11 C 0.317 3.683 12 N -0.576 5.576 13 C 0.105 3.895 14 C -0.309 4.309 15 C -0.012 4.012 16 O -0.550 6.550 17 Si 0.727 3.273 18 S 0.115 5.885 19 O -0.377 6.377 20 C 0.025 3.975 21 C -0.133 4.133 22 H 0.061 0.939 23 H 0.129 0.871 24 H 0.061 0.939 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.425 0.575 30 H 0.178 0.822 31 H 0.119 0.881 32 H 0.395 0.605 33 H -0.273 1.273 34 H -0.268 1.268 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.099 0.901 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.265 0.031 -2.175 2.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.316 3.684 4 O -0.427 6.427 5 C -0.124 4.124 6 H 0.171 0.829 7 C -0.134 4.134 8 C 0.044 3.956 9 C 0.010 3.990 10 N -0.319 5.319 11 C -0.053 4.053 12 N -0.303 5.303 13 C -0.045 4.045 14 C -0.432 4.432 15 C -0.126 4.126 16 O -0.358 6.358 17 Si 0.631 3.369 18 S 0.364 5.636 19 O -0.296 6.296 20 C -0.071 4.071 21 C -0.171 4.171 22 H 0.080 0.920 23 H 0.147 0.853 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.127 0.873 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.265 0.735 30 H 0.195 0.805 31 H 0.136 0.864 32 H 0.245 0.755 33 H -0.199 1.199 34 H -0.194 1.194 35 H 0.113 0.887 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.117 0.883 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.658 -0.727 -3.031 3.186 hybrid contribution -0.308 0.102 1.452 1.488 sum -0.966 -0.624 -1.579 1.953 Atomic orbital electron populations 1.23536 0.74992 1.05646 1.02461 1.86515 1.24780 1.32989 1.83446 1.23913 0.92430 0.81056 0.71024 1.90678 1.67866 1.37496 1.46634 1.22469 0.86266 1.01283 1.02418 0.82875 1.23010 0.96333 0.99378 0.94672 1.23012 0.92162 0.91127 0.89318 1.21586 0.87991 0.99101 0.90351 1.43800 1.10122 1.66342 1.11681 1.23865 0.92509 0.96439 0.92532 1.66491 1.15309 1.28614 1.19877 1.21421 0.88236 0.95115 0.99763 1.25690 1.03758 1.18725 0.95004 1.24191 0.82968 0.94129 1.11286 1.86478 1.56800 1.30581 1.61942 0.94115 0.79191 0.87074 0.76540 1.83906 1.07795 1.60875 1.11044 1.87948 1.80191 1.28945 1.32536 1.22852 0.96500 0.86168 1.01543 1.23529 0.97060 0.95109 1.01440 0.92039 0.85303 0.92033 0.88738 0.87314 0.89407 0.90841 0.73535 0.80482 0.86402 0.75510 1.19859 1.19361 0.88655 0.93150 0.93631 0.88250 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.76 10.57 -51.35 -0.54 -1.30 16 3 C 0.47 1.52 7.48 71.24 0.53 2.06 16 4 O -0.54 -5.30 15.65 21.96 0.34 -4.96 16 5 C -0.11 0.36 3.91 -11.01 -0.04 0.32 16 6 H 0.15 -1.20 7.62 -2.39 -0.02 -1.22 16 7 C -0.10 0.45 7.05 31.12 0.22 0.67 16 8 C 0.08 -0.34 0.84 -10.25 -0.01 -0.35 16 9 C 0.14 -0.53 4.83 86.38 0.42 -0.12 16 10 N -0.68 1.92 5.60 -351.03 -1.96 -0.05 16 11 C 0.32 0.36 8.09 179.32 1.45 1.81 16 12 N -0.58 -2.67 10.14 -202.03 -2.05 -4.72 16 13 C 0.11 0.33 11.22 83.54 0.94 1.27 16 14 C -0.31 -0.21 5.74 24.57 0.14 -0.07 16 15 C -0.01 0.01 2.99 71.24 0.21 0.22 16 16 O -0.55 0.15 12.87 -148.98 -1.92 -1.77 16 17 Si 0.73 -1.21 31.05 68.60 2.13 0.92 16 18 S 0.11 -0.12 20.57 -56.49 -1.16 -1.28 16 19 O -0.38 0.37 10.34 -148.98 -1.54 -1.17 16 20 C 0.03 -0.08 10.56 113.37 1.20 1.11 16 21 C -0.13 0.38 5.96 31.13 0.19 0.57 16 22 H 0.06 -0.05 8.13 -2.38 -0.02 -0.07 16 23 H 0.13 -0.90 8.14 -2.39 -0.02 -0.92 16 24 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 25 H 0.09 -0.23 8.09 -2.39 -0.02 -0.25 16 26 H 0.11 -0.82 8.10 -2.39 -0.02 -0.84 16 27 H 0.09 -0.41 7.31 -2.39 -0.02 -0.43 16 28 H 0.07 -0.15 7.35 -2.39 -0.02 -0.17 16 29 H 0.43 -2.20 8.45 -92.71 -0.78 -2.98 16 30 H 0.18 0.26 8.06 -2.91 -0.02 0.24 16 31 H 0.12 -0.04 7.96 -2.39 -0.02 -0.05 16 32 H 0.39 -3.05 8.70 -74.06 -0.64 -3.69 16 33 H -0.27 -1.21 7.11 99.48 0.71 -0.51 16 34 H -0.27 -0.75 7.11 99.48 0.71 -0.05 16 35 H 0.10 -0.43 8.14 -2.39 -0.02 -0.45 16 36 H 0.05 -0.20 7.49 -2.39 -0.02 -0.22 16 37 H 0.05 -0.15 7.15 -2.39 -0.02 -0.17 16 38 H 0.10 -0.53 8.10 -2.39 -0.02 -0.55 16 39 H 0.10 0.14 7.44 -2.38 -0.02 0.12 16 Total: 0.00 -17.38 344.60 -0.56 -17.94 By element: Atomic # 1 Polarization: -11.96 SS G_CDS: -0.30 Total: -12.26 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 6.44 Total: 8.65 kcal Atomic # 7 Polarization: -0.76 SS G_CDS: -4.01 Total: -4.77 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -3.66 Total: -9.19 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: 2.13 Total: 0.92 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -1.16 Total: -1.28 kcal Total: -17.38 -0.56 -17.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15102700_15704118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.663 kcal (2) G-P(sol) polarization free energy of solvation -17.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds