Wall clock time and date at job start Mon Mar 8 2021 06:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99717 * 2 1 4 4 O 1.20822 * 120.00250 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99923 * 180.02562 * 3 2 1 6 6 H 1.09001 * 112.85073 * 48.79873 * 5 3 2 7 7 C 1.53774 * 113.61812 * 180.02562 * 5 3 2 8 8 C 1.53778 * 87.08550 * 140.06457 * 7 5 3 9 9 C 1.53001 * 113.61366 * 89.11346 * 8 7 5 10 10 N 1.46495 * 109.46922 * 71.56140 * 9 8 7 11 11 C 1.38612 * 120.00119 * 184.79288 * 10 9 8 12 12 N 1.29682 * 124.94867 * 180.27949 * 11 10 9 13 13 C 1.32119 * 116.86508 * 180.22159 * 12 11 10 14 14 C 1.50700 * 122.71128 * 179.75200 * 13 12 11 15 15 O 1.42898 * 109.47292 * 292.79097 * 14 13 12 16 16 Si 1.86295 * 109.47180 * 52.79345 * 14 13 12 17 17 C 1.33334 * 114.57920 * 359.48758 * 13 12 11 18 18 C 1.50700 * 125.95240 * 180.28663 * 17 13 12 19 19 S 1.70958 * 124.94622 * 359.97094 * 11 10 9 20 20 O 1.42900 * 113.61741 * 219.94072 * 8 7 5 21 21 C 1.42898 * 114.00195 * 163.43062 * 20 8 7 22 22 C 1.53783 * 87.16969 * 334.52628 * 8 7 5 23 23 H 1.09003 * 109.46835 * 299.99713 * 1 2 3 24 24 H 1.08997 * 109.47532 * 59.99192 * 1 2 3 25 25 H 1.08992 * 109.47393 * 179.97438 * 1 2 3 26 26 H 1.09004 * 113.60988 * 25.51452 * 7 5 3 27 27 H 1.08994 * 113.68957 * 254.62551 * 7 5 3 28 28 H 1.08997 * 109.47492 * 311.55851 * 9 8 7 29 29 H 1.09000 * 109.46865 * 191.55520 * 9 8 7 30 30 H 0.97009 * 119.99965 * 4.79430 * 10 9 8 31 31 H 1.09002 * 109.46990 * 172.79034 * 14 13 12 32 32 H 0.96700 * 113.99882 * 179.97438 * 15 14 13 33 33 H 1.48498 * 110.00154 * 178.67883 * 16 14 13 34 34 H 1.48502 * 110.00155 * 299.99921 * 16 14 13 35 35 H 1.09004 * 109.46843 * 90.17241 * 18 17 13 36 36 H 1.09001 * 109.47117 * 210.17348 * 18 17 13 37 37 H 1.08997 * 109.47251 * 330.17210 * 18 17 13 38 38 H 1.08995 * 109.47245 * 185.86608 * 21 20 8 39 39 H 1.09001 * 109.47239 * 305.86735 * 21 20 8 40 40 H 1.09004 * 109.47225 * 65.86837 * 21 20 8 41 41 H 1.09004 * 113.61527 * 140.02676 * 22 8 7 42 42 H 1.08997 * 113.61555 * 270.92142 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 4.0233 0.6366 -0.7567 7 6 4.1077 2.7143 0.0001 8 6 5.1828 2.2258 0.9852 9 6 6.4446 1.6950 0.3017 10 7 7.1921 2.8129 -0.2793 11 6 8.3254 2.5684 -1.0391 12 7 9.0603 3.4825 -1.5924 13 6 10.1049 3.0688 -2.2876 14 6 11.0433 4.0166 -2.9891 15 8 10.3546 4.6615 -4.0624 16 14 11.6491 5.2986 -1.7808 17 6 10.2650 1.7454 -2.3136 18 6 11.3683 1.0014 -3.0208 19 16 8.9623 1.0182 -1.3768 20 8 5.4679 3.1581 2.0300 21 6 6.1653 2.5909 3.1408 22 6 4.1948 1.1218 1.3975 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 3.4179 3.4400 0.4311 27 1 4.5092 3.0316 -0.9622 28 1 6.1643 0.9965 -0.4866 29 1 7.0676 1.1838 1.0356 30 1 6.8940 3.7243 -0.1324 31 1 11.8929 3.4601 -3.3849 32 1 10.8989 5.2876 -4.5592 33 1 12.6001 6.2203 -2.4525 34 1 10.5002 6.0643 -1.2340 35 1 12.2122 0.8727 -2.3430 36 1 11.0033 0.0240 -3.3363 37 1 11.6875 1.5694 -3.8947 38 1 6.2521 3.3341 3.9333 39 1 5.6150 1.7263 3.5123 40 1 7.1607 2.2794 2.8243 41 1 4.6664 0.1530 1.5621 42 1 3.5289 1.4129 2.2098 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15102700_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:39:52 Heat of formation + Delta-G solvation = -73.887064 kcal Electronic energy + Delta-G solvation = -26173.663727 eV Core-core repulsion = 22249.091646 eV Total energy + Delta-G solvation = -3924.572082 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.25937 -40.95660 -40.62771 -37.80685 -37.67422 -36.92666 -36.46185 -33.21145 -30.12803 -29.21723 -28.26621 -28.10565 -26.86653 -25.82101 -25.37910 -24.00698 -22.18620 -20.76616 -19.80007 -19.31915 -18.98469 -18.42656 -18.07616 -17.53970 -17.49123 -16.97906 -16.77191 -16.33538 -16.16835 -15.82547 -15.56683 -15.50952 -15.30989 -14.64628 -14.43844 -14.26958 -14.04511 -13.83729 -13.83012 -13.64925 -13.42172 -13.34655 -13.16352 -12.98788 -12.77892 -12.74239 -12.24645 -12.18597 -11.82947 -11.69843 -11.65262 -11.49605 -11.12373 -10.82434 -10.49519 -10.37443 -9.91420 -8.60291 -4.83860 0.05365 0.21696 0.79313 1.08614 1.36564 1.57479 1.74439 1.79492 1.94050 2.30010 2.57986 2.99894 3.02508 3.12767 3.24822 3.46861 3.69716 3.79622 3.89864 4.00792 4.05732 4.09799 4.12806 4.20798 4.21480 4.26271 4.29586 4.36341 4.39611 4.42778 4.56196 4.60426 4.66514 4.70638 4.71413 4.91152 4.94076 4.95755 5.23050 5.32761 5.54798 5.94352 6.33527 6.50982 6.67360 7.06511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.472 3.528 4 O -0.499 6.499 5 C -0.110 4.110 6 H 0.131 0.869 7 C -0.100 4.100 8 C 0.080 3.920 9 C 0.118 3.882 10 N -0.688 5.688 11 C 0.318 3.682 12 N -0.534 5.534 13 C 0.121 3.879 14 C -0.039 4.039 15 O -0.529 6.529 16 Si 0.694 3.306 17 C -0.246 4.246 18 C -0.070 4.070 19 S 0.101 5.899 20 O -0.360 6.360 21 C 0.025 3.975 22 C -0.134 4.134 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.418 0.582 31 H 0.081 0.919 32 H 0.379 0.621 33 H -0.261 1.261 34 H -0.246 1.246 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.093 0.907 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.588 -6.201 2.345 7.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.314 3.686 4 O -0.386 6.386 5 C -0.129 4.129 6 H 0.149 0.851 7 C -0.137 4.137 8 C 0.039 3.961 9 C -0.008 4.008 10 N -0.330 5.330 11 C -0.053 4.053 12 N -0.259 5.259 13 C -0.010 4.010 14 C -0.151 4.151 15 O -0.335 6.335 16 Si 0.593 3.407 17 C -0.369 4.369 18 C -0.130 4.130 19 S 0.349 5.651 20 O -0.279 6.279 21 C -0.071 4.071 22 C -0.172 4.172 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.122 0.878 26 H 0.132 0.868 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.258 0.742 31 H 0.099 0.901 32 H 0.227 0.773 33 H -0.186 1.186 34 H -0.169 1.169 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.286 -5.849 3.186 6.784 hybrid contribution 0.004 1.046 -1.434 1.775 sum 1.291 -4.803 1.752 5.273 Atomic orbital electron populations 1.23338 0.75768 1.04076 1.02803 1.86506 1.23842 1.33132 1.83831 1.23313 0.91348 0.81541 0.72365 1.90707 1.66846 1.36405 1.44638 1.22369 0.88294 1.01027 1.01207 0.85075 1.23070 0.95925 0.95096 0.99615 1.22949 0.91981 0.91407 0.89736 1.21751 0.92206 0.88877 0.97921 1.43644 1.24804 1.10134 1.54410 1.23247 0.92984 0.93088 0.96015 1.66056 1.08318 1.34547 1.16975 1.18788 0.93817 0.90748 0.97637 1.24273 0.95048 1.00545 0.95208 1.86634 1.41427 1.60480 1.44989 0.94809 0.81778 0.79708 0.84393 1.25006 1.04915 0.95625 1.11375 1.20188 0.94190 0.99262 0.99326 1.83831 1.22317 1.08090 1.50829 1.88031 1.76946 1.34728 1.28157 1.22828 0.95718 0.99798 0.88788 1.23550 0.97775 1.00172 0.95700 0.91697 0.91672 0.87761 0.86760 0.89039 0.89846 0.90515 0.74242 0.90144 0.77299 1.18634 1.16949 0.90563 0.91257 0.90409 0.89066 0.93427 0.93623 0.88866 0.87618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.30 10.57 -39.27 -0.41 -0.72 16 3 C 0.47 0.67 7.49 36.01 0.27 0.94 16 4 O -0.50 -2.29 15.65 -18.75 -0.29 -2.59 16 5 C -0.11 0.18 3.91 -90.82 -0.36 -0.18 16 6 H 0.13 -0.47 7.59 -51.93 -0.39 -0.87 16 7 C -0.10 0.07 6.80 -25.92 -0.18 -0.11 16 8 C 0.08 -0.14 0.80 -89.81 -0.07 -0.21 16 9 C 0.12 -0.25 4.60 -4.04 -0.02 -0.27 16 10 N -0.69 -0.35 5.64 -62.30 -0.35 -0.70 16 11 C 0.32 0.81 8.24 -87.68 -0.72 0.09 16 12 N -0.53 -2.62 9.74 -11.36 -0.11 -2.73 16 13 C 0.12 0.42 5.24 -84.18 -0.44 -0.02 16 14 C -0.04 -0.07 2.82 36.01 0.10 0.03 16 15 O -0.53 -1.65 12.86 -35.23 -0.45 -2.10 16 16 Si 0.69 0.94 32.60 -169.99 -5.54 -4.61 16 17 C -0.25 -0.42 6.57 -36.02 -0.24 -0.66 16 18 C -0.07 0.08 9.85 36.01 0.35 0.43 16 19 S 0.10 0.07 22.28 -107.50 -2.40 -2.32 16 20 O -0.36 -0.03 10.46 -35.23 -0.37 -0.40 16 21 C 0.02 -0.05 10.55 101.05 1.07 1.02 16 22 C -0.13 0.36 6.11 -25.78 -0.16 0.20 16 23 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 24 H 0.06 -0.04 8.13 -51.93 -0.42 -0.46 16 25 H 0.10 -0.34 8.14 -51.93 -0.42 -0.76 16 26 H 0.11 0.14 7.44 -51.93 -0.39 -0.25 16 27 H 0.09 -0.07 8.10 -51.93 -0.42 -0.49 16 28 H 0.08 -0.27 7.24 -51.93 -0.38 -0.65 16 29 H 0.08 -0.23 7.14 -51.93 -0.37 -0.60 16 30 H 0.42 0.52 8.50 -40.82 -0.35 0.17 16 31 H 0.08 -0.08 6.22 -51.93 -0.32 -0.40 16 32 H 0.38 -0.53 8.74 45.56 0.40 -0.13 16 33 H -0.26 -0.62 7.11 56.52 0.40 -0.21 16 34 H -0.25 -1.43 7.11 56.52 0.40 -1.03 16 35 H 0.08 -0.19 8.14 -51.93 -0.42 -0.62 16 36 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 37 H 0.08 -0.12 6.91 -51.93 -0.36 -0.48 16 38 H 0.09 -0.20 8.14 -51.93 -0.42 -0.63 16 39 H 0.05 -0.15 7.40 -51.93 -0.38 -0.53 16 40 H 0.05 -0.10 7.13 -51.93 -0.37 -0.47 16 41 H 0.09 -0.42 8.10 -51.93 -0.42 -0.85 16 42 H 0.11 -0.20 8.10 -51.93 -0.42 -0.62 16 LS Contribution 364.98 15.07 5.50 5.50 Total: 0.00 -9.58 364.98 -9.66 -19.24 By element: Atomic # 1 Polarization: -4.97 SS G_CDS: -5.91 Total: -10.88 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 0.68 Total: 2.31 kcal Atomic # 7 Polarization: -2.97 SS G_CDS: -0.46 Total: -3.43 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -1.53 Total: -5.80 kcal Atomic # 14 Polarization: 0.94 SS G_CDS: -5.54 Total: -4.61 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -2.40 Total: -2.32 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -9.58 -9.66 -19.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15102700_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.649 kcal (2) G-P(sol) polarization free energy of solvation -9.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds