Wall clock time and date at job start Mon Mar 8 2021 06:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99717 * 2 1 4 4 O 1.20822 * 120.00250 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99923 * 180.02562 * 3 2 1 6 6 H 1.09001 * 112.85073 * 48.79873 * 5 3 2 7 7 C 1.53774 * 113.61812 * 180.02562 * 5 3 2 8 8 C 1.53778 * 87.08550 * 140.06457 * 7 5 3 9 9 C 1.53001 * 113.61366 * 89.11346 * 8 7 5 10 10 N 1.46495 * 109.46922 * 71.56140 * 9 8 7 11 11 C 1.38612 * 120.00119 * 184.79288 * 10 9 8 12 12 N 1.29682 * 124.94867 * 180.27949 * 11 10 9 13 13 C 1.32119 * 116.86508 * 180.22159 * 12 11 10 14 14 C 1.50700 * 122.71128 * 179.75200 * 13 12 11 15 15 O 1.42898 * 109.47292 * 292.79097 * 14 13 12 16 16 Si 1.86295 * 109.47180 * 52.79345 * 14 13 12 17 17 C 1.33334 * 114.57920 * 359.48758 * 13 12 11 18 18 C 1.50700 * 125.95240 * 180.28663 * 17 13 12 19 19 S 1.70958 * 124.94622 * 359.97094 * 11 10 9 20 20 O 1.42900 * 113.61741 * 219.94072 * 8 7 5 21 21 C 1.42898 * 114.00195 * 163.43062 * 20 8 7 22 22 C 1.53783 * 87.16969 * 334.52628 * 8 7 5 23 23 H 1.09003 * 109.46835 * 299.99713 * 1 2 3 24 24 H 1.08997 * 109.47532 * 59.99192 * 1 2 3 25 25 H 1.08992 * 109.47393 * 179.97438 * 1 2 3 26 26 H 1.09004 * 113.60988 * 25.51452 * 7 5 3 27 27 H 1.08994 * 113.68957 * 254.62551 * 7 5 3 28 28 H 1.08997 * 109.47492 * 311.55851 * 9 8 7 29 29 H 1.09000 * 109.46865 * 191.55520 * 9 8 7 30 30 H 0.97009 * 119.99965 * 4.79430 * 10 9 8 31 31 H 1.09002 * 109.46990 * 172.79034 * 14 13 12 32 32 H 0.96700 * 113.99882 * 179.97438 * 15 14 13 33 33 H 1.48498 * 110.00154 * 178.67883 * 16 14 13 34 34 H 1.48502 * 110.00155 * 299.99921 * 16 14 13 35 35 H 1.09004 * 109.46843 * 90.17241 * 18 17 13 36 36 H 1.09001 * 109.47117 * 210.17348 * 18 17 13 37 37 H 1.08997 * 109.47251 * 330.17210 * 18 17 13 38 38 H 1.08995 * 109.47245 * 185.86608 * 21 20 8 39 39 H 1.09001 * 109.47239 * 305.86735 * 21 20 8 40 40 H 1.09004 * 109.47225 * 65.86837 * 21 20 8 41 41 H 1.09004 * 113.61527 * 140.02676 * 22 8 7 42 42 H 1.08997 * 113.61555 * 270.92142 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 4.0233 0.6366 -0.7567 7 6 4.1077 2.7143 0.0001 8 6 5.1828 2.2258 0.9852 9 6 6.4446 1.6950 0.3017 10 7 7.1921 2.8129 -0.2793 11 6 8.3254 2.5684 -1.0391 12 7 9.0603 3.4825 -1.5924 13 6 10.1049 3.0688 -2.2876 14 6 11.0433 4.0166 -2.9891 15 8 10.3546 4.6615 -4.0624 16 14 11.6491 5.2986 -1.7808 17 6 10.2650 1.7454 -2.3136 18 6 11.3683 1.0014 -3.0208 19 16 8.9623 1.0182 -1.3768 20 8 5.4679 3.1581 2.0300 21 6 6.1653 2.5909 3.1408 22 6 4.1948 1.1218 1.3975 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 3.4179 3.4400 0.4311 27 1 4.5092 3.0316 -0.9622 28 1 6.1643 0.9965 -0.4866 29 1 7.0676 1.1838 1.0356 30 1 6.8940 3.7243 -0.1324 31 1 11.8929 3.4601 -3.3849 32 1 10.8989 5.2876 -4.5592 33 1 12.6001 6.2203 -2.4525 34 1 10.5002 6.0643 -1.2340 35 1 12.2122 0.8727 -2.3430 36 1 11.0033 0.0240 -3.3363 37 1 11.6875 1.5694 -3.8947 38 1 6.2521 3.3341 3.9333 39 1 5.6150 1.7263 3.5123 40 1 7.1607 2.2794 2.8243 41 1 4.6664 0.1530 1.5621 42 1 3.5289 1.4129 2.2098 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15102700_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:39:52 Heat of formation + Delta-G solvation = -75.058934 kcal Electronic energy + Delta-G solvation = -26173.714543 eV Core-core repulsion = 22249.091646 eV Total energy + Delta-G solvation = -3924.622898 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.24353 -41.03070 -40.65135 -37.90079 -37.73898 -36.91725 -36.48584 -33.20222 -30.08346 -29.21458 -28.14863 -28.04757 -26.74411 -25.79793 -25.35351 -24.04860 -22.18567 -20.77285 -19.77326 -19.33573 -19.02475 -18.53886 -18.12854 -17.58119 -17.49729 -16.94351 -16.71245 -16.27648 -16.13611 -15.77402 -15.63678 -15.45435 -15.38596 -14.61648 -14.39541 -14.25697 -14.02264 -13.99905 -13.71981 -13.54418 -13.41619 -13.28894 -13.11519 -12.98100 -12.74148 -12.65191 -12.40113 -12.13318 -11.88697 -11.77733 -11.63799 -11.46541 -11.12585 -10.71175 -10.58025 -10.46945 -9.98157 -8.63479 -4.97564 -0.01712 0.16823 0.72902 1.00131 1.25138 1.57851 1.60643 1.78257 1.85838 2.15290 2.71088 3.09443 3.13821 3.25493 3.37659 3.46997 3.66442 3.85449 4.05882 4.07655 4.18845 4.23841 4.24745 4.26156 4.27554 4.44890 4.46277 4.49279 4.53841 4.60457 4.67082 4.76875 4.79703 4.85188 4.88063 4.94005 5.00113 5.03400 5.28466 5.32013 5.57663 6.08515 6.25481 6.58263 6.59678 6.99688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.471 3.529 4 O -0.540 6.540 5 C -0.104 4.104 6 H 0.159 0.841 7 C -0.107 4.107 8 C 0.086 3.914 9 C 0.117 3.883 10 N -0.689 5.689 11 C 0.301 3.699 12 N -0.578 5.578 13 C 0.090 3.910 14 C -0.044 4.044 15 O -0.554 6.554 16 Si 0.765 3.235 17 C -0.249 4.249 18 C -0.073 4.073 19 S 0.143 5.857 20 O -0.385 6.385 21 C 0.021 3.979 22 C -0.123 4.123 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.131 0.869 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.411 0.589 31 H 0.113 0.887 32 H 0.395 0.605 33 H -0.272 1.272 34 H -0.316 1.316 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.123 0.877 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.842 -8.806 2.190 9.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.315 3.685 4 O -0.430 6.430 5 C -0.123 4.123 6 H 0.176 0.824 7 C -0.145 4.145 8 C 0.046 3.954 9 C -0.007 4.007 10 N -0.329 5.329 11 C -0.070 4.070 12 N -0.305 5.305 13 C -0.040 4.040 14 C -0.155 4.155 15 O -0.364 6.364 16 Si 0.670 3.330 17 C -0.372 4.372 18 C -0.132 4.132 19 S 0.392 5.608 20 O -0.304 6.304 21 C -0.075 4.075 22 C -0.161 4.161 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.149 0.851 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.119 0.881 29 H 0.110 0.890 30 H 0.249 0.751 31 H 0.130 0.870 32 H 0.246 0.754 33 H -0.198 1.198 34 H -0.244 1.244 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.141 0.859 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.566 -8.496 3.028 9.378 hybrid contribution -0.485 1.893 -1.359 2.380 sum 2.081 -6.603 1.669 7.122 Atomic orbital electron populations 1.23538 0.75025 1.05724 1.02363 1.86508 1.24708 1.32730 1.83437 1.23918 0.92449 0.81094 0.71033 1.90691 1.67939 1.37674 1.46655 1.22512 0.86331 1.00598 1.02833 0.82356 1.23028 0.96200 0.95443 0.99788 1.22910 0.92043 0.91333 0.89122 1.21938 0.91815 0.88320 0.98627 1.43818 1.24500 1.10512 1.54086 1.23520 0.93267 0.94086 0.96158 1.66062 1.09619 1.36421 1.18397 1.19061 0.94339 0.91881 0.98674 1.24441 0.95551 1.00690 0.94851 1.86589 1.43011 1.61224 1.45545 0.94078 0.78397 0.78230 0.82269 1.25465 1.05507 0.95467 1.10788 1.20332 0.93880 0.99251 0.99696 1.83547 1.21325 1.05972 1.49959 1.88003 1.77351 1.36026 1.29048 1.22932 0.96010 1.00267 0.88254 1.23523 0.96942 1.01112 0.94549 0.92117 0.92230 0.85064 0.89293 0.89309 0.88136 0.89021 0.75144 0.86974 0.75447 1.19797 1.24450 0.88707 0.90506 0.89852 0.89265 0.91933 0.93159 0.85899 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.55 10.57 -51.45 -0.54 -1.10 16 3 C 0.47 1.64 7.49 71.24 0.53 2.18 16 4 O -0.54 -6.00 15.65 21.98 0.34 -5.66 16 5 C -0.10 0.36 3.91 -10.92 -0.04 0.32 16 6 H 0.16 -1.43 7.59 -2.39 -0.02 -1.45 16 7 C -0.11 0.01 6.80 31.12 0.21 0.22 16 8 C 0.09 -0.29 0.80 -10.27 -0.01 -0.30 16 9 C 0.12 -0.60 4.60 86.38 0.40 -0.20 16 10 N -0.69 -1.12 5.64 -351.03 -1.98 -3.10 16 11 C 0.30 1.66 8.24 179.32 1.48 3.14 16 12 N -0.58 -6.42 9.74 -189.86 -1.85 -8.27 16 13 C 0.09 0.65 5.24 41.41 0.22 0.87 16 14 C -0.04 -0.15 2.82 71.24 0.20 0.05 16 15 O -0.55 -3.76 12.86 -148.98 -1.92 -5.67 16 16 Si 0.77 2.91 32.60 68.60 2.24 5.15 16 17 C -0.25 -0.61 6.57 24.58 0.16 -0.45 16 18 C -0.07 0.31 9.85 71.24 0.70 1.01 16 19 S 0.14 0.03 22.28 -56.49 -1.26 -1.23 16 20 O -0.39 -0.39 10.46 -148.98 -1.56 -1.95 16 21 C 0.02 -0.08 10.55 113.37 1.20 1.11 16 22 C -0.12 0.78 6.11 31.21 0.19 0.97 16 23 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 24 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 25 H 0.13 -0.98 8.14 -2.39 -0.02 -1.00 16 26 H 0.09 0.47 7.44 -2.38 -0.02 0.45 16 27 H 0.09 0.00 8.10 -2.39 -0.02 -0.02 16 28 H 0.10 -0.85 7.24 -2.39 -0.02 -0.86 16 29 H 0.09 -0.71 7.14 -2.39 -0.02 -0.72 16 30 H 0.41 1.77 8.50 -92.70 -0.79 0.99 16 31 H 0.11 -0.39 6.22 -2.39 -0.01 -0.40 16 32 H 0.40 -0.97 8.74 -74.06 -0.65 -1.62 16 33 H -0.27 -1.37 7.11 99.48 0.71 -0.66 16 34 H -0.32 -4.91 7.11 99.48 0.71 -4.21 16 35 H 0.09 -0.73 8.14 -2.38 -0.02 -0.75 16 36 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H 0.08 -0.43 6.91 -2.39 -0.02 -0.44 16 38 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.06 -0.45 7.40 -2.39 -0.02 -0.46 16 40 H 0.05 -0.25 7.13 -2.38 -0.02 -0.27 16 41 H 0.12 -1.47 8.10 -2.38 -0.02 -1.49 16 42 H 0.10 -0.38 8.10 -2.39 -0.02 -0.39 16 Total: 0.00 -25.56 364.98 -0.42 -25.99 By element: Atomic # 1 Polarization: -13.89 SS G_CDS: -0.33 Total: -14.22 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 6.43 Total: 10.07 kcal Atomic # 7 Polarization: -7.54 SS G_CDS: -3.83 Total: -11.37 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -3.67 Total: -14.38 kcal Atomic # 14 Polarization: 2.91 SS G_CDS: 2.24 Total: 5.15 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -1.26 Total: -1.23 kcal Total: -25.56 -0.42 -25.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15102700_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.074 kcal (2) G-P(sol) polarization free energy of solvation -25.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds