Wall clock time and date at job start Mon Mar 8 2021 06:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34233 * 116.99898 * 2 1 4 4 O 1.20828 * 119.99775 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99921 * 179.97438 * 3 2 1 6 6 H 1.08996 * 112.85323 * 309.66858 * 5 3 2 7 7 C 1.53777 * 113.61153 * 80.86594 * 5 3 2 8 8 C 1.54051 * 86.98684 * 140.01785 * 7 5 3 9 9 C 1.52992 * 113.61434 * 89.11299 * 8 7 5 10 10 N 1.46498 * 109.47198 * 202.31002 * 9 8 7 11 11 C 1.39148 * 120.00225 * 184.95485 * 10 9 8 12 12 N 1.32342 * 119.71583 * 359.97438 * 11 10 9 13 13 C 1.32007 * 121.64335 * 179.97438 * 12 11 10 14 14 C 1.37977 * 120.90762 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.33179 * 179.97438 * 14 13 12 16 16 O 1.42901 * 109.46791 * 119.99919 * 15 14 13 17 17 Si 1.86302 * 109.46700 * 0.02562 * 15 14 13 18 18 C 1.38912 * 119.34415 * 0.02562 * 14 13 12 19 19 C 1.38440 * 118.48335 * 359.74310 * 18 14 13 20 20 F 1.35105 * 120.47205 * 180.26908 * 19 18 14 21 21 O 1.42899 * 113.69758 * 220.01296 * 8 7 5 22 22 C 1.42906 * 113.99743 * 283.03488 * 21 8 7 23 23 C 1.53780 * 113.61102 * 178.47051 * 5 3 2 24 24 H 1.08999 * 109.47438 * 299.99997 * 1 2 3 25 25 H 1.09001 * 109.47286 * 60.00412 * 1 2 3 26 26 H 1.09003 * 109.46637 * 180.02562 * 1 2 3 27 27 H 1.08996 * 113.61581 * 254.60672 * 7 5 3 28 28 H 1.09000 * 113.61854 * 25.51400 * 7 5 3 29 29 H 1.09005 * 109.47445 * 322.30636 * 9 8 7 30 30 H 1.09002 * 109.47202 * 82.31010 * 9 8 7 31 31 H 0.97002 * 120.00364 * 4.95646 * 10 9 8 32 32 H 1.08006 * 119.54226 * 179.97438 * 13 12 11 33 33 H 1.08996 * 109.47114 * 240.00250 * 15 14 13 34 34 H 0.96696 * 114.00438 * 300.00048 * 16 15 14 35 35 H 1.48503 * 109.99487 * 179.97438 * 17 15 14 36 36 H 1.48495 * 109.99862 * 301.31712 * 17 15 14 37 37 H 1.08005 * 120.75478 * 180.02562 * 18 14 13 38 38 H 1.09000 * 109.46878 * 294.74470 * 22 21 8 39 39 H 1.08998 * 109.46868 * 54.74849 * 22 21 8 40 40 H 1.08996 * 109.46877 * 174.75089 * 22 21 8 41 41 H 1.08999 * 113.62066 * 334.48640 * 23 5 3 42 42 H 1.09003 * 113.61730 * 105.39062 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0223 0.6569 0.7740 7 6 4.1937 1.0835 -1.3903 8 6 5.1841 2.1996 -1.0076 9 6 6.4449 1.6871 -0.3088 10 7 7.0466 2.7719 0.4704 11 6 8.2644 2.5740 1.1138 12 7 8.8740 1.4032 1.0184 13 6 10.0303 1.1740 1.6126 14 6 10.6499 2.1546 2.3597 15 6 11.9696 1.8787 3.0331 16 8 12.9552 2.7883 2.5398 17 14 12.4999 0.1307 2.6669 18 6 10.0446 3.3985 2.4861 19 6 8.8346 3.6119 1.8481 20 9 8.2134 4.8082 1.9396 21 8 5.4706 3.1043 -2.0760 22 6 6.3772 2.5843 -3.0506 23 6 4.1077 2.7138 -0.0371 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 4.6631 0.1094 -1.5272 28 1 3.5280 1.3527 -2.2104 29 1 6.1827 0.8642 0.3563 30 1 7.1577 1.3376 -1.0558 31 1 6.5961 3.6283 0.5379 32 1 10.4978 0.2055 1.5124 33 1 11.8621 2.0082 4.1099 34 1 13.1035 2.7285 1.5862 35 1 13.8005 -0.1537 3.3249 36 1 11.4682 -0.8239 3.1460 37 1 10.5096 4.1828 3.0652 38 1 7.3538 2.4291 -2.5921 39 1 5.9984 1.6349 -3.4290 40 1 6.4708 3.2923 -3.8740 41 1 3.4186 3.4280 -0.4878 42 1 4.5078 3.0550 0.9177 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15102700_17656566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:39:55 Heat of formation + Delta-G solvation = -122.007956 kcal Electronic energy + Delta-G solvation = -28180.829522 eV Core-core repulsion = 23851.102159 eV Total energy + Delta-G solvation = -4329.727363 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.136 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.95775 -42.23536 -41.40051 -40.62936 -38.07116 -37.74487 -36.91037 -36.28515 -33.25414 -31.89179 -29.73499 -28.48073 -28.07015 -26.97562 -26.14926 -25.63070 -24.35256 -22.87243 -22.06873 -20.20880 -19.49032 -19.03642 -18.53066 -18.34644 -18.09768 -17.55522 -17.52575 -17.07184 -16.75698 -16.65685 -16.20683 -16.02244 -15.88114 -15.74091 -15.40021 -15.22741 -14.92719 -14.49881 -14.34944 -14.33458 -14.02574 -13.75915 -13.64004 -13.43907 -13.26755 -13.02058 -12.73253 -12.57177 -12.54674 -12.11314 -12.09239 -11.88284 -11.64297 -11.43705 -11.34361 -10.74090 -10.71408 -10.60699 -10.39734 -8.77799 -4.94914 -0.08414 0.10170 1.01217 1.34019 1.61821 1.68262 1.86506 2.02741 2.54410 2.72778 3.01996 3.10490 3.19611 3.22509 3.42545 3.47023 3.54088 3.67890 3.85743 3.86877 4.01429 4.08591 4.24004 4.26028 4.30337 4.41834 4.45217 4.49034 4.51416 4.55551 4.60857 4.64381 4.68103 4.72654 4.79317 4.86126 4.90681 4.98879 5.04260 5.28890 5.33977 5.89922 6.08978 6.16744 6.60176 6.80528 6.91039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.471 3.529 4 O -0.539 6.539 5 C -0.103 4.103 6 H 0.155 0.845 7 C -0.125 4.125 8 C 0.081 3.919 9 C 0.130 3.870 10 N -0.712 5.712 11 C 0.384 3.616 12 N -0.522 5.522 13 C 0.149 3.851 14 C -0.205 4.205 15 C -0.061 4.061 16 O -0.557 6.557 17 Si 0.777 3.223 18 C -0.041 4.041 19 C -0.038 4.038 20 F -0.143 7.143 21 O -0.385 6.385 22 C 0.022 3.978 23 C -0.106 4.106 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.130 0.870 27 H 0.116 0.884 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.415 0.585 32 H 0.186 0.814 33 H 0.110 0.890 34 H 0.396 0.604 35 H -0.299 1.299 36 H -0.276 1.276 37 H 0.152 0.848 38 H 0.048 0.952 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.016 -5.858 -3.094 6.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.315 3.685 4 O -0.428 6.428 5 C -0.122 4.122 6 H 0.172 0.828 7 C -0.163 4.163 8 C 0.041 3.959 9 C 0.006 3.994 10 N -0.345 5.345 11 C 0.145 3.855 12 N -0.239 5.239 13 C -0.008 4.008 14 C -0.211 4.211 15 C -0.171 4.171 16 O -0.365 6.365 17 Si 0.683 3.317 18 C -0.067 4.067 19 C -0.065 4.065 20 F -0.122 7.122 21 O -0.304 6.304 22 C -0.074 4.074 23 C -0.143 4.143 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.149 0.851 27 H 0.134 0.866 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.253 0.747 32 H 0.202 0.798 33 H 0.127 0.873 34 H 0.246 0.754 35 H -0.227 1.227 36 H -0.203 1.203 37 H 0.169 0.831 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.398 -6.765 -2.779 7.446 hybrid contribution -0.564 1.882 1.053 2.229 sum 0.834 -4.883 -1.726 5.246 Atomic orbital electron populations 1.23539 0.75010 1.05698 1.02401 1.86511 1.24742 1.32829 1.83454 1.23929 0.92443 0.81088 0.71019 1.90685 1.67904 1.37585 1.46661 1.22421 0.86228 1.00725 1.02791 0.82769 1.23505 0.97159 1.01065 0.94554 1.23100 0.92725 0.91453 0.88628 1.21619 0.93058 0.89548 0.95178 1.44449 1.19273 1.17107 1.53664 1.18498 0.87832 0.88951 0.90174 1.67351 1.11909 1.19084 1.25574 1.22712 0.89153 0.98998 0.89908 1.20994 1.00531 0.94525 1.05023 1.25029 0.85432 1.06583 1.00085 1.86478 1.57984 1.61880 1.30141 0.93796 0.76654 0.71542 0.89751 1.21417 0.91340 0.98454 0.95490 1.18171 0.96731 0.82738 1.08835 1.91472 1.82190 1.43162 1.95378 1.88000 1.65687 1.41490 1.35214 1.22908 0.92459 1.00575 0.91413 1.23028 0.96213 0.95271 0.99807 0.92141 0.92094 0.85143 0.86596 0.88842 0.88976 0.89615 0.74722 0.79767 0.87265 0.75410 1.22744 1.20275 0.83064 0.93382 0.92215 0.89112 0.89155 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.81 10.57 -51.44 -0.54 -1.36 16 3 C 0.47 1.88 7.48 71.24 0.53 2.41 16 4 O -0.54 -5.98 15.66 21.96 0.34 -5.63 16 5 C -0.10 0.27 3.90 -11.01 -0.04 0.23 16 6 H 0.15 -1.13 7.65 -2.39 -0.02 -1.15 16 7 C -0.12 0.58 6.64 31.21 0.21 0.79 16 8 C 0.08 -0.22 0.92 -10.18 -0.01 -0.23 16 9 C 0.13 -0.49 4.83 86.38 0.42 -0.08 16 10 N -0.71 0.29 5.40 -344.81 -1.86 -1.57 16 11 C 0.38 0.79 7.49 133.08 1.00 1.79 16 12 N -0.52 -0.37 9.57 -193.03 -1.85 -2.22 16 13 C 0.15 -0.38 9.84 84.60 0.83 0.45 16 14 C -0.21 0.41 5.40 -19.76 -0.11 0.30 16 15 C -0.06 0.21 2.84 71.24 0.20 0.41 16 16 O -0.56 1.21 12.78 -148.98 -1.90 -0.69 16 17 Si 0.78 -4.33 29.82 68.60 2.05 -2.29 16 18 C -0.04 -0.04 9.75 22.48 0.22 0.18 16 19 C -0.04 -0.13 7.35 22.58 0.17 0.04 16 20 F -0.14 -0.84 16.65 44.97 0.75 -0.09 16 21 O -0.38 -0.54 10.65 -148.98 -1.59 -2.13 16 22 C 0.02 -0.07 10.34 113.37 1.17 1.10 16 23 C -0.11 0.05 6.51 31.12 0.20 0.25 16 24 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 25 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 26 H 0.13 -0.91 8.14 -2.39 -0.02 -0.93 16 27 H 0.12 -1.07 8.10 -2.39 -0.02 -1.09 16 28 H 0.09 -0.21 8.09 -2.39 -0.02 -0.23 16 29 H 0.09 -0.53 7.34 -2.38 -0.02 -0.55 16 30 H 0.09 -0.33 6.37 -2.39 -0.02 -0.35 16 31 H 0.41 0.05 7.23 -92.71 -0.67 -0.62 16 32 H 0.19 -1.47 4.88 -2.91 -0.01 -1.49 16 33 H 0.11 -0.25 7.96 -2.39 -0.02 -0.27 16 34 H 0.40 -4.02 8.70 -74.06 -0.64 -4.66 16 35 H -0.30 -0.78 7.11 99.48 0.71 -0.08 16 36 H -0.28 0.47 7.11 99.48 0.71 1.18 16 37 H 0.15 0.00 8.06 -2.91 -0.02 -0.02 16 38 H 0.05 -0.17 6.69 -2.39 -0.02 -0.18 16 39 H 0.06 -0.35 7.83 -2.39 -0.02 -0.37 16 40 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 41 H 0.09 0.41 7.46 -2.39 -0.02 0.39 16 42 H 0.09 -0.17 7.37 -2.39 -0.02 -0.18 16 Total: 0.00 -19.40 355.42 1.19 -18.22 By element: Atomic # 1 Polarization: -10.85 SS G_CDS: -0.19 Total: -11.04 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 5.99 Total: 8.80 kcal Atomic # 7 Polarization: -0.08 SS G_CDS: -3.71 Total: -3.79 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -3.69 Total: -9.81 kcal Atomic # 9 Polarization: -0.84 SS G_CDS: 0.75 Total: -0.09 kcal Atomic # 14 Polarization: -4.33 SS G_CDS: 2.05 Total: -2.29 kcal Total: -19.40 1.19 -18.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15102700_17656566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.790 kcal (2) G-P(sol) polarization free energy of solvation -19.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds