Wall clock time and date at job start Mon Mar 8 2021 07:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34709 * 116.99970 * 2 1 4 4 O 1.21469 * 119.99899 * 0.26951 * 3 2 1 5 5 C 1.47727 * 120.00073 * 179.97438 * 3 2 1 6 6 C 1.39610 * 120.14767 * 173.31794 * 5 3 2 7 7 C 1.50693 * 120.07798 * 359.97438 * 6 5 3 8 8 H 1.08998 * 112.85228 * 340.53741 * 7 6 5 9 9 C 1.53786 * 113.61862 * 111.73716 * 7 6 5 10 10 C 1.53783 * 87.08124 * 139.97930 * 9 7 6 11 11 H 1.08998 * 113.61173 * 220.01775 * 10 9 7 12 12 N 1.46499 * 113.61479 * 89.20064 * 10 9 7 13 13 C 1.38401 * 120.00159 * 154.99459 * 12 10 9 14 14 N 1.32492 * 119.21947 * 359.73519 * 13 12 10 15 15 C 1.32277 * 120.74355 * 179.71457 * 14 13 12 16 16 C 1.38598 * 119.19720 * 0.54600 * 15 14 13 17 17 C 1.50694 * 120.72536 * 179.75366 * 16 15 14 18 18 O 1.42899 * 109.47192 * 244.97905 * 17 16 15 19 19 Si 1.86306 * 109.46898 * 4.97366 * 17 16 15 20 20 C 1.38611 * 118.55789 * 359.72619 * 16 15 14 21 21 N 1.32276 * 119.19459 * 0.02562 * 20 16 15 22 22 C 1.53785 * 113.61398 * 209.34632 * 7 6 5 23 23 C 1.37974 * 119.84270 * 179.69867 * 6 5 3 24 24 C 1.38340 * 120.15230 * 0.57609 * 23 6 5 25 25 C 1.38393 * 120.29871 * 359.72375 * 24 23 6 26 26 C 1.37920 * 120.15510 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.47214 * 60.00353 * 1 2 3 28 28 H 1.09006 * 109.47177 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47172 * 300.00281 * 1 2 3 30 30 H 1.08994 * 113.61108 * 254.52683 * 9 7 6 31 31 H 1.09003 * 113.60853 * 25.42980 * 9 7 6 32 32 H 0.97004 * 120.00051 * 335.00282 * 12 10 9 33 33 H 1.08002 * 120.40024 * 180.29992 * 15 14 13 34 34 H 1.09003 * 109.47742 * 124.97373 * 17 16 15 35 35 H 0.96704 * 113.99958 * 59.99645 * 18 17 16 36 36 H 1.48509 * 109.99704 * 58.68564 * 19 17 16 37 37 H 1.48498 * 110.00323 * 179.97438 * 19 17 16 38 38 H 1.07996 * 120.39966 * 179.97438 * 20 16 15 39 39 H 1.09001 * 113.61436 * 334.56187 * 22 7 6 40 40 H 1.08994 * 113.61691 * 105.46665 * 22 7 6 41 41 H 1.08004 * 119.92037 * 180.27656 * 23 6 5 42 42 H 1.07995 * 119.84972 * 179.74501 * 24 23 6 43 43 H 1.08005 * 119.92167 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.07892 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0049 5 6 3.5388 1.2776 0.0006 6 6 4.1763 2.5117 -0.1399 7 6 3.3610 3.7698 -0.2933 8 1 2.3379 3.5746 -0.6144 9 6 3.4576 4.7175 0.9140 10 6 3.4999 5.8749 -0.0977 11 1 4.2018 6.6643 0.1712 12 7 2.1760 6.3889 -0.4572 13 6 2.0380 7.6897 -0.9090 14 7 3.1128 8.4584 -1.0054 15 6 3.0163 9.7044 -1.4389 16 6 1.7710 10.2061 -1.7831 17 6 1.6207 11.6223 -2.2755 18 8 0.8479 12.3735 -1.3372 19 14 3.3045 12.3989 -2.4561 20 6 0.6668 9.3766 -1.6650 21 7 0.8333 8.1387 -1.2295 22 6 4.0655 4.8643 -1.1122 23 6 5.5544 2.5774 -0.1323 24 6 6.3044 1.4227 0.0022 25 6 5.6789 0.1955 0.1356 26 6 4.3020 0.1160 0.1358 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 2.5660 4.7181 1.5409 31 1 4.3784 4.6035 1.4859 32 1 1.3961 5.8174 -0.3785 33 1 3.8968 10.3246 -1.5198 34 1 1.1164 11.6195 -3.2419 35 1 1.2377 12.4185 -0.4533 36 1 4.1291 11.6088 -3.4054 37 1 3.1702 13.7958 -2.9418 38 1 -0.3176 9.7369 -1.9246 39 1 5.1529 4.7907 -1.0952 40 1 3.6640 4.9833 -2.1185 41 1 6.0488 3.5320 -0.2363 42 1 7.3829 1.4793 0.0034 43 1 6.2704 -0.7022 0.2398 44 1 3.8151 -0.8423 0.2404 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15105876_12175864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:23:44 Heat of formation + Delta-G solvation = 15.893068 kcal Electronic energy + Delta-G solvation = -28877.505833 eV Core-core repulsion = 24763.564001 eV Total energy + Delta-G solvation = -4113.941831 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.16851 -41.84492 -40.59946 -39.23340 -37.97894 -37.45329 -35.45710 -34.62698 -32.68100 -32.51080 -31.32175 -28.77745 -26.98472 -26.73428 -26.10347 -25.54059 -24.82994 -23.37055 -22.76513 -21.89699 -20.28218 -19.51947 -18.98676 -18.46864 -18.01094 -17.97633 -17.39104 -17.13677 -16.55384 -16.51205 -16.08903 -15.91666 -15.76576 -15.64381 -15.57902 -15.13711 -14.84207 -14.58163 -14.51082 -14.11077 -14.05309 -13.90954 -13.51255 -13.31208 -13.19346 -13.12488 -12.94514 -12.52440 -12.33367 -12.19349 -11.94029 -11.79142 -11.77439 -11.71566 -11.37191 -11.13853 -10.69231 -10.52158 -10.10504 -9.95491 -9.79009 -9.03322 -5.09169 -0.35065 0.12186 0.22022 0.26385 1.24996 1.52079 1.58600 1.67884 1.84408 1.94614 2.67103 2.87407 3.17699 3.43703 3.46627 3.57334 3.65101 3.66741 3.72417 3.76289 3.82750 3.84312 3.93672 4.01707 4.13619 4.22446 4.23803 4.24454 4.31461 4.35268 4.53099 4.56123 4.66644 4.68638 4.73420 4.78752 4.85584 4.93239 4.99497 5.04642 5.12138 5.21901 5.28962 5.36137 5.38173 5.70614 5.79360 5.88352 6.09385 6.49132 6.54372 6.74175 7.36322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.510 3.490 4 O -0.498 6.498 5 C -0.131 4.131 6 C -0.002 4.002 7 C -0.104 4.104 8 H 0.141 0.859 9 C -0.130 4.130 10 C 0.139 3.861 11 H 0.111 0.889 12 N -0.675 5.675 13 C 0.571 3.429 14 N -0.561 5.561 15 C 0.200 3.800 16 C -0.297 4.297 17 C -0.046 4.046 18 O -0.541 6.541 19 Si 0.680 3.320 20 C 0.224 3.776 21 N -0.569 5.569 22 C -0.149 4.149 23 C -0.133 4.133 24 C -0.077 4.077 25 C -0.139 4.139 26 C -0.059 4.059 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.417 0.583 33 H 0.166 0.834 34 H 0.115 0.885 35 H 0.379 0.621 36 H -0.255 1.255 37 H -0.251 1.251 38 H 0.170 0.830 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.614 -2.131 2.067 4.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.356 3.644 4 O -0.388 6.388 5 C -0.132 4.132 6 C -0.002 4.002 7 C -0.121 4.121 8 H 0.158 0.842 9 C -0.168 4.168 10 C 0.033 3.967 11 H 0.129 0.871 12 N -0.310 5.310 13 C 0.215 3.785 14 N -0.283 5.283 15 C 0.032 3.968 16 C -0.305 4.305 17 C -0.158 4.158 18 O -0.346 6.346 19 Si 0.582 3.418 20 C 0.055 3.945 21 N -0.291 5.291 22 C -0.188 4.188 23 C -0.151 4.151 24 C -0.095 4.095 25 C -0.156 4.156 26 C -0.077 4.077 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.256 0.744 33 H 0.183 0.817 34 H 0.132 0.868 35 H 0.226 0.774 36 H -0.180 1.180 37 H -0.176 1.176 38 H 0.187 0.813 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.847 -2.462 1.406 4.779 hybrid contribution -1.050 0.132 -0.599 1.216 sum 2.798 -2.330 0.807 3.729 Atomic orbital electron populations 1.23334 0.75454 1.04097 1.02840 1.86546 1.23949 1.32548 1.84099 1.21268 0.89141 0.81470 0.72522 1.90659 1.66904 1.35150 1.46111 1.18949 0.88968 0.94746 1.10501 1.19834 0.93729 0.93159 0.93514 1.22475 1.01974 0.89848 0.97803 0.84233 1.23333 1.03547 0.93759 0.96136 1.21818 0.84048 0.95530 0.95342 0.87133 1.43876 1.10022 1.08315 1.68831 1.19354 0.84789 0.87076 0.87306 1.67901 1.31887 1.06409 1.22129 1.22753 0.96084 0.90249 0.87682 1.21694 0.96160 1.00262 1.12383 1.24695 1.07493 0.88811 0.94802 1.86510 1.50964 1.73179 1.23939 0.95019 0.76984 0.80283 0.89525 1.22834 0.99040 0.86220 0.86368 1.67989 1.24172 1.17121 1.19794 1.23699 1.00859 0.95192 0.99082 1.21069 0.92669 0.99294 1.02030 1.21495 1.00581 0.92369 0.95089 1.21207 0.94326 0.98411 1.01702 1.21488 0.94062 0.97767 0.94390 0.91628 0.87755 0.91592 0.90360 0.88523 0.74449 0.81719 0.86771 0.77378 1.18004 1.17571 0.81334 0.88726 0.90897 0.84670 0.85093 0.84965 0.84410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.02 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.59 9.84 -40.52 -0.40 -0.99 16 3 C 0.51 1.38 7.85 34.61 0.27 1.65 16 4 O -0.50 -2.02 12.92 -19.24 -0.25 -2.26 16 5 C -0.13 -0.22 5.87 -104.98 -0.62 -0.83 16 6 C 0.00 0.00 5.31 -104.21 -0.55 -0.55 16 7 C -0.10 -0.08 3.11 -90.96 -0.28 -0.36 16 8 H 0.14 0.37 4.93 -52.48 -0.26 0.11 16 9 C -0.13 0.02 7.33 -25.91 -0.19 -0.17 16 10 C 0.14 0.05 4.34 -67.02 -0.29 -0.24 16 11 H 0.11 0.06 7.36 -51.93 -0.38 -0.32 16 12 N -0.68 -1.26 5.41 -54.91 -0.30 -1.56 16 13 C 0.57 1.92 8.43 -322.82 -2.72 -0.80 16 14 N -0.56 -1.49 9.13 -13.93 -0.13 -1.62 16 15 C 0.20 0.12 9.92 -17.23 -0.17 -0.05 16 16 C -0.30 -0.11 5.36 -104.35 -0.56 -0.67 16 17 C -0.05 0.04 2.83 36.00 0.10 0.14 16 18 O -0.54 0.19 12.85 -35.23 -0.45 -0.26 16 19 Si 0.68 -1.13 29.88 -169.99 -5.08 -6.21 16 20 C 0.22 0.39 10.99 -17.22 -0.19 0.20 16 21 N -0.57 -2.09 10.46 -13.93 -0.15 -2.24 16 22 C -0.15 0.00 7.25 -25.82 -0.19 -0.19 16 23 C -0.13 0.09 9.01 -39.64 -0.36 -0.27 16 24 C -0.08 0.10 10.04 -39.49 -0.40 -0.30 16 25 C -0.14 0.14 10.03 -39.64 -0.40 -0.26 16 26 C -0.06 -0.01 9.62 -39.17 -0.38 -0.39 16 27 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 28 H 0.10 -0.32 8.14 -51.93 -0.42 -0.74 16 29 H 0.07 -0.05 8.13 -51.93 -0.42 -0.47 16 30 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.10 -0.12 7.98 -51.93 -0.41 -0.53 16 32 H 0.42 0.73 8.82 -40.82 -0.36 0.37 16 33 H 0.17 -0.37 5.07 -52.49 -0.27 -0.63 16 34 H 0.11 -0.07 7.96 -51.93 -0.41 -0.49 16 35 H 0.38 -1.51 8.70 45.56 0.40 -1.11 16 36 H -0.26 -0.19 7.11 56.52 0.40 0.21 16 37 H -0.25 -0.41 7.11 56.52 0.40 -0.01 16 38 H 0.17 -0.01 8.06 -52.49 -0.42 -0.43 16 39 H 0.09 -0.13 5.97 -51.93 -0.31 -0.44 16 40 H 0.07 0.11 8.14 -51.93 -0.42 -0.32 16 41 H 0.14 -0.33 6.20 -52.48 -0.33 -0.65 16 42 H 0.13 -0.45 8.06 -52.49 -0.42 -0.87 16 43 H 0.13 -0.39 8.06 -52.48 -0.42 -0.82 16 44 H 0.14 -0.14 7.63 -52.49 -0.40 -0.54 16 LS Contribution 368.04 15.07 5.55 5.55 Total: 0.00 -7.78 368.04 -12.36 -20.15 By element: Atomic # 1 Polarization: -3.19 SS G_CDS: -5.31 Total: -8.50 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -5.85 Total: -2.05 kcal Atomic # 7 Polarization: -4.85 SS G_CDS: -0.57 Total: -5.42 kcal Atomic # 8 Polarization: -2.41 SS G_CDS: -1.10 Total: -3.51 kcal Atomic # 14 Polarization: -1.13 SS G_CDS: -5.08 Total: -6.21 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -7.78 -12.36 -20.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15105876_12175864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.039 kcal (2) G-P(sol) polarization free energy of solvation -7.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds