Wall clock time and date at job start Mon Mar 8 2021 07:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34709 * 116.99970 * 2 1 4 4 O 1.21469 * 119.99899 * 0.26951 * 3 2 1 5 5 C 1.47727 * 120.00073 * 179.97438 * 3 2 1 6 6 C 1.39610 * 120.14767 * 173.31794 * 5 3 2 7 7 C 1.50693 * 120.07798 * 359.97438 * 6 5 3 8 8 H 1.08998 * 112.85228 * 340.53741 * 7 6 5 9 9 C 1.53786 * 113.61862 * 111.73716 * 7 6 5 10 10 C 1.53783 * 87.08124 * 139.97930 * 9 7 6 11 11 H 1.08998 * 113.61173 * 220.01775 * 10 9 7 12 12 N 1.46499 * 113.61479 * 89.20064 * 10 9 7 13 13 C 1.38401 * 120.00159 * 154.99459 * 12 10 9 14 14 N 1.32492 * 119.21947 * 359.73519 * 13 12 10 15 15 C 1.32277 * 120.74355 * 179.71457 * 14 13 12 16 16 C 1.38598 * 119.19720 * 0.54600 * 15 14 13 17 17 C 1.50694 * 120.72536 * 179.75366 * 16 15 14 18 18 O 1.42899 * 109.47192 * 244.97905 * 17 16 15 19 19 Si 1.86306 * 109.46898 * 4.97366 * 17 16 15 20 20 C 1.38611 * 118.55789 * 359.72619 * 16 15 14 21 21 N 1.32276 * 119.19459 * 0.02562 * 20 16 15 22 22 C 1.53785 * 113.61398 * 209.34632 * 7 6 5 23 23 C 1.37974 * 119.84270 * 179.69867 * 6 5 3 24 24 C 1.38340 * 120.15230 * 0.57609 * 23 6 5 25 25 C 1.38393 * 120.29871 * 359.72375 * 24 23 6 26 26 C 1.37920 * 120.15510 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.47214 * 60.00353 * 1 2 3 28 28 H 1.09006 * 109.47177 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47172 * 300.00281 * 1 2 3 30 30 H 1.08994 * 113.61108 * 254.52683 * 9 7 6 31 31 H 1.09003 * 113.60853 * 25.42980 * 9 7 6 32 32 H 0.97004 * 120.00051 * 335.00282 * 12 10 9 33 33 H 1.08002 * 120.40024 * 180.29992 * 15 14 13 34 34 H 1.09003 * 109.47742 * 124.97373 * 17 16 15 35 35 H 0.96704 * 113.99958 * 59.99645 * 18 17 16 36 36 H 1.48509 * 109.99704 * 58.68564 * 19 17 16 37 37 H 1.48498 * 110.00323 * 179.97438 * 19 17 16 38 38 H 1.07996 * 120.39966 * 179.97438 * 20 16 15 39 39 H 1.09001 * 113.61436 * 334.56187 * 22 7 6 40 40 H 1.08994 * 113.61691 * 105.46665 * 22 7 6 41 41 H 1.08004 * 119.92037 * 180.27656 * 23 6 5 42 42 H 1.07995 * 119.84972 * 179.74501 * 24 23 6 43 43 H 1.08005 * 119.92167 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.07892 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0049 5 6 3.5388 1.2776 0.0006 6 6 4.1763 2.5117 -0.1399 7 6 3.3610 3.7698 -0.2933 8 1 2.3379 3.5746 -0.6144 9 6 3.4576 4.7175 0.9140 10 6 3.4999 5.8749 -0.0977 11 1 4.2018 6.6643 0.1712 12 7 2.1760 6.3889 -0.4572 13 6 2.0380 7.6897 -0.9090 14 7 3.1128 8.4584 -1.0054 15 6 3.0163 9.7044 -1.4389 16 6 1.7710 10.2061 -1.7831 17 6 1.6207 11.6223 -2.2755 18 8 0.8479 12.3735 -1.3372 19 14 3.3045 12.3989 -2.4561 20 6 0.6668 9.3766 -1.6650 21 7 0.8333 8.1387 -1.2295 22 6 4.0655 4.8643 -1.1122 23 6 5.5544 2.5774 -0.1323 24 6 6.3044 1.4227 0.0022 25 6 5.6789 0.1955 0.1356 26 6 4.3020 0.1160 0.1358 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 2.5660 4.7181 1.5409 31 1 4.3784 4.6035 1.4859 32 1 1.3961 5.8174 -0.3785 33 1 3.8968 10.3246 -1.5198 34 1 1.1164 11.6195 -3.2419 35 1 1.2377 12.4185 -0.4533 36 1 4.1291 11.6088 -3.4054 37 1 3.1702 13.7958 -2.9418 38 1 -0.3176 9.7369 -1.9246 39 1 5.1529 4.7907 -1.0952 40 1 3.6640 4.9833 -2.1185 41 1 6.0488 3.5320 -0.2363 42 1 7.3829 1.4793 0.0034 43 1 6.2704 -0.7022 0.2398 44 1 3.8151 -0.8423 0.2404 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15105876_12175864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:23:43 Heat of formation + Delta-G solvation = 20.714789 kcal Electronic energy + Delta-G solvation = -28877.296747 eV Core-core repulsion = 24763.564001 eV Total energy + Delta-G solvation = -4113.732746 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.25168 -41.92865 -40.66247 -39.20999 -37.95978 -37.58627 -35.51627 -34.75633 -32.66042 -32.50263 -31.33064 -28.76446 -27.01475 -26.74781 -26.13748 -25.60247 -24.81605 -23.41867 -22.79187 -21.93030 -20.32132 -19.59268 -19.03074 -18.53237 -18.09057 -17.99057 -17.49476 -17.10517 -16.59948 -16.54830 -16.09508 -15.93510 -15.79998 -15.62768 -15.56827 -15.14747 -14.84818 -14.59616 -14.55907 -14.15224 -14.09713 -13.94302 -13.49612 -13.29589 -13.16956 -13.14108 -12.90130 -12.49411 -12.32891 -12.25378 -11.97664 -11.92852 -11.87060 -11.77666 -11.39040 -11.19066 -10.77416 -10.52385 -10.06063 -10.05477 -9.74133 -9.12802 -4.98637 -0.35570 0.02681 0.11646 0.33284 1.32733 1.44186 1.64539 1.65684 1.75800 1.99993 2.71087 2.75853 3.12442 3.44698 3.53039 3.57516 3.62314 3.67271 3.68550 3.73120 3.79326 3.89194 3.97973 4.14265 4.18595 4.22730 4.26176 4.26914 4.38985 4.43119 4.55521 4.62278 4.65029 4.72422 4.73738 4.79792 4.82999 4.96182 4.98765 5.03273 5.09794 5.25628 5.30915 5.34213 5.47198 5.66306 5.79558 5.88370 6.00305 6.36021 6.61541 6.78902 7.23004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.504 3.496 4 O -0.521 6.521 5 C -0.154 4.154 6 C -0.015 4.015 7 C -0.103 4.103 8 H 0.117 0.883 9 C -0.120 4.120 10 C 0.141 3.859 11 H 0.113 0.887 12 N -0.677 5.677 13 C 0.555 3.445 14 N -0.572 5.572 15 C 0.196 3.804 16 C -0.288 4.288 17 C -0.049 4.049 18 O -0.555 6.555 19 Si 0.772 3.228 20 C 0.211 3.789 21 N -0.595 5.595 22 C -0.140 4.140 23 C -0.135 4.135 24 C -0.074 4.074 25 C -0.141 4.141 26 C -0.066 4.066 27 H 0.061 0.939 28 H 0.130 0.870 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.414 0.586 33 H 0.193 0.807 34 H 0.112 0.888 35 H 0.395 0.605 36 H -0.283 1.283 37 H -0.296 1.296 38 H 0.180 0.820 39 H 0.114 0.886 40 H 0.055 0.945 41 H 0.154 0.846 42 H 0.158 0.842 43 H 0.154 0.846 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.484 -2.112 2.414 6.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.351 3.649 4 O -0.413 6.413 5 C -0.156 4.156 6 C -0.015 4.015 7 C -0.120 4.120 8 H 0.134 0.866 9 C -0.158 4.158 10 C 0.035 3.965 11 H 0.131 0.869 12 N -0.312 5.312 13 C 0.199 3.801 14 N -0.294 5.294 15 C 0.029 3.971 16 C -0.296 4.296 17 C -0.161 4.161 18 O -0.363 6.363 19 Si 0.678 3.322 20 C 0.043 3.957 21 N -0.318 5.318 22 C -0.179 4.179 23 C -0.153 4.153 24 C -0.092 4.092 25 C -0.158 4.158 26 C -0.084 4.084 27 H 0.080 0.920 28 H 0.149 0.851 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.131 0.869 32 H 0.251 0.749 33 H 0.209 0.791 34 H 0.130 0.870 35 H 0.245 0.755 36 H -0.210 1.210 37 H -0.223 1.223 38 H 0.197 0.803 39 H 0.132 0.868 40 H 0.074 0.926 41 H 0.172 0.828 42 H 0.175 0.825 43 H 0.172 0.828 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.705 -2.462 1.779 6.463 hybrid contribution -1.662 0.141 -0.742 1.826 sum 4.043 -2.321 1.037 4.776 Atomic orbital electron populations 1.23541 0.74438 1.05734 1.02546 1.86539 1.25066 1.32199 1.83879 1.21642 0.89845 0.81395 0.72007 1.90656 1.67539 1.35779 1.47350 1.19101 0.88439 0.95813 1.12201 1.19953 0.94589 0.92757 0.94203 1.22301 1.00962 0.90401 0.98361 0.86566 1.23300 1.03702 0.93114 0.95720 1.21861 0.83462 0.95583 0.95601 0.86930 1.43980 1.10473 1.08031 1.68713 1.19570 0.85060 0.87613 0.87877 1.67948 1.31600 1.07161 1.22713 1.23234 0.97121 0.89915 0.86808 1.21786 0.95717 1.00549 1.11547 1.24852 1.08402 0.88113 0.94691 1.86480 1.51647 1.73019 1.25110 0.93944 0.74494 0.76032 0.87735 1.23139 1.00155 0.86005 0.86357 1.67983 1.24694 1.18201 1.20874 1.23674 1.01800 0.94565 0.97859 1.21312 0.91914 1.00560 1.01509 1.21857 1.01924 0.91854 0.93585 1.21520 0.93891 0.99582 1.00842 1.21644 0.94792 0.97526 0.94426 0.92020 0.85141 0.91842 0.91600 0.86923 0.74869 0.79057 0.87036 0.75534 1.20979 1.22341 0.80264 0.86761 0.92588 0.82837 0.82485 0.82822 0.83848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.76 9.84 -56.19 -0.55 -2.31 16 3 C 0.50 3.77 7.85 70.33 0.55 4.32 16 4 O -0.52 -5.67 12.92 19.94 0.26 -5.42 16 5 C -0.15 -0.69 5.87 -20.10 -0.12 -0.81 16 6 C -0.01 -0.04 5.31 -19.60 -0.10 -0.14 16 7 C -0.10 -0.30 3.11 -11.01 -0.03 -0.33 16 8 H 0.12 0.95 4.93 -11.11 -0.05 0.90 16 9 C -0.12 -0.07 7.33 31.12 0.23 0.16 16 10 C 0.14 0.22 4.34 45.58 0.20 0.41 16 11 H 0.11 0.14 7.36 -2.39 -0.02 0.12 16 12 N -0.68 -3.71 5.41 -327.65 -1.77 -5.48 16 13 C 0.56 4.43 8.43 261.49 2.20 6.63 16 14 N -0.57 -3.22 9.13 -197.99 -1.81 -5.02 16 15 C 0.20 0.16 9.92 84.71 0.84 1.00 16 16 C -0.29 -0.19 5.36 -19.69 -0.11 -0.30 16 17 C -0.05 0.10 2.83 71.23 0.20 0.30 16 18 O -0.55 0.72 12.85 -148.98 -1.91 -1.20 16 19 Si 0.77 -3.09 29.88 68.60 2.05 -1.04 16 20 C 0.21 0.90 10.99 84.71 0.93 1.83 16 21 N -0.60 -5.25 10.46 -197.99 -2.07 -7.32 16 22 C -0.14 -0.10 7.25 31.18 0.23 0.13 16 23 C -0.14 0.32 9.01 22.23 0.20 0.52 16 24 C -0.07 0.33 10.04 22.33 0.22 0.55 16 25 C -0.14 0.45 10.03 22.23 0.22 0.67 16 26 C -0.07 -0.03 9.62 22.53 0.22 0.18 16 27 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.13 -0.77 8.14 -2.38 -0.02 -0.79 16 29 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 30 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.11 -0.31 7.98 -2.39 -0.02 -0.33 16 32 H 0.41 2.55 8.82 -92.71 -0.82 1.73 16 33 H 0.19 -1.11 5.07 -2.91 -0.01 -1.13 16 34 H 0.11 -0.16 7.96 -2.39 -0.02 -0.18 16 35 H 0.39 -3.52 8.70 -74.05 -0.64 -4.16 16 36 H -0.28 -0.22 7.11 99.48 0.71 0.48 16 37 H -0.30 -1.08 7.11 99.48 0.71 -0.37 16 38 H 0.18 0.13 8.06 -2.91 -0.02 0.11 16 39 H 0.11 -0.41 5.97 -2.39 -0.01 -0.43 16 40 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.15 -1.03 6.20 -2.91 -0.02 -1.05 16 42 H 0.16 -1.54 8.06 -2.91 -0.02 -1.56 16 43 H 0.15 -1.22 8.06 -2.91 -0.02 -1.24 16 44 H 0.14 -0.23 7.63 -2.91 -0.02 -0.25 16 Total: 0.00 -20.05 368.04 0.87 -19.18 By element: Atomic # 1 Polarization: -7.32 SS G_CDS: -0.39 Total: -7.71 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 7.08 Total: 16.32 kcal Atomic # 7 Polarization: -12.18 SS G_CDS: -5.65 Total: -17.83 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -2.21 Total: -8.92 kcal Atomic # 14 Polarization: -3.09 SS G_CDS: 2.05 Total: -1.04 kcal Total: -20.05 0.87 -19.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15105876_12175864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.892 kcal (2) G-P(sol) polarization free energy of solvation -20.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds