Wall clock time and date at job start Mon Mar 8 2021 07:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34710 * 117.00203 * 2 1 4 4 O 1.21467 * 120.00277 * 359.97438 * 3 2 1 5 5 C 1.47737 * 120.00158 * 180.02562 * 3 2 1 6 6 C 1.39602 * 120.15054 * 173.68168 * 5 3 2 7 7 C 1.50700 * 120.07685 * 0.02708 * 6 5 3 8 8 H 1.09000 * 112.90670 * 326.94446 * 7 6 5 9 9 C 1.53781 * 113.61782 * 98.19652 * 7 6 5 10 10 C 1.53783 * 87.08090 * 139.98034 * 9 7 6 11 11 H 1.08999 * 113.61702 * 219.93392 * 10 9 7 12 12 N 1.46501 * 113.61214 * 89.11624 * 10 9 7 13 13 C 1.39008 * 119.99819 * 156.52869 * 12 10 9 14 14 N 1.32398 * 119.70242 * 179.97438 * 13 12 10 15 15 C 1.31974 * 121.62112 * 179.97438 * 14 13 12 16 16 C 1.38020 * 120.85550 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.33784 * 179.97438 * 16 15 14 18 18 O 1.42897 * 109.46976 * 119.99729 * 17 16 15 19 19 Si 1.86296 * 109.46879 * 359.97438 * 17 16 15 20 20 C 1.38888 * 119.33043 * 0.24796 * 16 15 14 21 21 C 1.38305 * 118.50228 * 359.50822 * 20 16 15 22 22 C 1.53779 * 87.17511 * 334.52986 * 10 9 7 23 23 C 1.37965 * 119.84743 * 180.29406 * 6 5 3 24 24 C 1.38348 * 120.14882 * 359.44882 * 23 6 5 25 25 C 1.38389 * 120.29890 * 0.55559 * 24 23 6 26 26 C 1.37920 * 120.15612 * 359.72140 * 25 24 23 27 27 H 1.08998 * 109.47042 * 300.00483 * 1 2 3 28 28 H 1.09009 * 109.46999 * 60.00189 * 1 2 3 29 29 H 1.08997 * 109.47333 * 180.02562 * 1 2 3 30 30 H 1.08995 * 113.61331 * 25.43486 * 9 7 6 31 31 H 1.09003 * 113.68928 * 254.54034 * 9 7 6 32 32 H 0.96999 * 120.00063 * 336.53041 * 12 10 9 33 33 H 1.07999 * 119.57480 * 180.02562 * 15 14 13 34 34 H 1.09002 * 109.47322 * 239.99764 * 17 16 15 35 35 H 0.96703 * 114.00279 * 299.99920 * 18 17 16 36 36 H 1.48503 * 110.00127 * 179.97438 * 19 17 16 37 37 H 1.48496 * 110.00051 * 301.32175 * 19 17 16 38 38 H 1.08000 * 120.74691 * 179.74760 * 20 16 15 39 39 H 1.07998 * 120.44868 * 180.21415 * 21 20 16 40 40 H 1.08990 * 113.61893 * 140.02474 * 22 10 9 41 41 H 1.09009 * 113.60845 * 270.92859 * 22 10 9 42 42 H 1.07997 * 119.92633 * 179.70826 * 23 6 5 43 43 H 1.07998 * 119.84622 * 180.27340 * 24 23 6 44 44 H 1.08006 * 119.91756 * 179.74377 * 25 24 23 45 45 H 1.07998 * 120.07920 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2776 -0.0006 6 6 4.1762 2.5125 -0.1334 7 6 3.3609 3.7718 -0.2762 8 1 2.4263 3.6133 -0.8144 9 6 3.1896 4.5474 1.0406 10 6 3.3838 5.8320 0.2177 11 1 3.9908 6.5849 0.7203 12 7 2.1361 6.3760 -0.3241 13 6 2.0498 7.7244 -0.6507 14 7 0.9196 8.2098 -1.1404 15 6 0.7957 9.4836 -1.4627 16 6 1.8488 10.3607 -1.2995 17 6 1.6946 11.8128 -1.6720 18 8 1.9154 12.6265 -0.5182 19 14 -0.0266 12.1081 -2.3208 20 6 3.0538 9.8904 -0.7940 21 6 3.1521 8.5518 -0.4603 22 6 4.1715 4.9772 -0.7891 23 6 5.5544 2.5767 -0.1393 24 6 6.3044 1.4223 -0.0024 25 6 5.6790 0.1949 0.1296 26 6 4.3021 0.1155 0.1314 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.9869 4.3658 1.7612 31 1 2.1951 4.4547 1.4773 32 1 1.3702 5.7953 -0.4550 33 1 -0.1419 9.8443 -1.8593 34 1 2.4219 12.0696 -2.4422 35 1 1.3027 12.4519 0.2093 36 1 -0.1917 13.5367 -2.6911 37 1 -0.2793 11.2443 -3.5019 38 1 3.8940 10.5558 -0.6608 39 1 4.0732 8.1533 -0.0614 40 1 3.9689 5.2305 -1.8296 41 1 5.2369 4.9128 -0.5677 42 1 6.0488 3.5309 -0.2467 43 1 7.3829 1.4788 -0.0032 44 1 6.2706 -0.7029 0.2319 45 1 3.8153 -0.8429 0.2349 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15105876_13915762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:23:47 Heat of formation + Delta-G solvation = 2.138001 kcal Electronic energy + Delta-G solvation = -28746.118047 eV Core-core repulsion = 24697.005662 eV Total energy + Delta-G solvation = -4049.112385 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.06977 -41.44197 -40.56520 -39.18477 -37.83838 -37.53378 -35.33547 -33.42136 -32.60814 -32.14321 -30.83708 -28.75615 -26.85483 -26.80132 -25.79790 -24.87809 -24.68237 -23.20293 -22.39970 -21.84490 -20.14546 -19.18303 -18.79993 -18.41964 -18.08303 -17.47048 -17.41946 -17.03678 -16.51152 -16.39578 -16.06796 -15.87319 -15.68902 -15.60475 -15.34497 -14.89527 -14.84621 -14.54076 -14.36079 -14.18536 -14.01616 -13.78950 -13.47432 -13.33773 -13.26446 -13.12590 -12.91319 -12.43129 -12.39412 -12.20188 -12.11649 -11.88553 -11.83271 -11.38881 -11.07986 -10.92533 -10.75039 -10.41403 -10.37398 -10.05913 -9.75109 -8.70202 -4.99495 -0.34593 0.22212 0.33302 0.40333 1.34036 1.46204 1.62905 1.66182 1.95870 2.05291 2.71825 2.81966 3.40332 3.54337 3.56559 3.60985 3.66913 3.68717 3.78906 3.84857 3.95434 3.99152 4.08939 4.14573 4.17748 4.23485 4.26354 4.37767 4.39697 4.42676 4.51084 4.60232 4.63848 4.72372 4.75730 4.79333 4.84364 4.96049 5.01601 5.02595 5.05553 5.16030 5.26537 5.30912 5.33119 5.47165 5.53899 5.62961 5.87754 6.05010 6.50019 6.62682 6.79867 7.13546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.501 3.499 4 O -0.521 6.521 5 C -0.153 4.153 6 C -0.017 4.017 7 C -0.082 4.082 8 H 0.099 0.901 9 C -0.120 4.120 10 C 0.133 3.867 11 H 0.116 0.884 12 N -0.705 5.705 13 C 0.396 3.604 14 N -0.569 5.569 15 C 0.144 3.856 16 C -0.237 4.237 17 C -0.051 4.051 18 O -0.555 6.555 19 Si 0.762 3.238 20 C -0.011 4.011 21 C -0.238 4.238 22 C -0.147 4.147 23 C -0.137 4.137 24 C -0.075 4.075 25 C -0.141 4.141 26 C -0.067 4.067 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.130 0.870 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.402 0.598 33 H 0.165 0.835 34 H 0.109 0.891 35 H 0.394 0.606 36 H -0.295 1.295 37 H -0.289 1.289 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.063 0.937 41 H 0.120 0.880 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.153 0.847 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.094 -3.740 3.052 6.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.279 6.279 3 C 0.348 3.652 4 O -0.412 6.412 5 C -0.154 4.154 6 C -0.017 4.017 7 C -0.100 4.100 8 H 0.117 0.883 9 C -0.158 4.158 10 C 0.027 3.973 11 H 0.134 0.866 12 N -0.335 5.335 13 C 0.161 3.839 14 N -0.287 5.287 15 C -0.013 4.013 16 C -0.242 4.242 17 C -0.163 4.163 18 O -0.363 6.363 19 Si 0.669 3.331 20 C -0.036 4.036 21 C -0.263 4.263 22 C -0.186 4.186 23 C -0.154 4.154 24 C -0.093 4.093 25 C -0.159 4.159 26 C -0.085 4.085 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.148 0.852 30 H 0.127 0.873 31 H 0.080 0.920 32 H 0.238 0.762 33 H 0.182 0.818 34 H 0.126 0.874 35 H 0.244 0.756 36 H -0.222 1.222 37 H -0.216 1.216 38 H 0.166 0.834 39 H 0.172 0.828 40 H 0.082 0.918 41 H 0.138 0.862 42 H 0.175 0.825 43 H 0.175 0.825 44 H 0.171 0.829 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.312 -3.605 1.989 5.284 hybrid contribution 0.219 -0.062 -0.321 0.394 sum 3.531 -3.668 1.667 5.357 Atomic orbital electron populations 1.23520 0.74500 1.05660 1.02492 1.86533 1.25010 1.32324 1.84001 1.21616 0.89840 0.81438 0.72323 1.90760 1.67522 1.36021 1.46864 1.19113 0.88471 0.95762 1.12094 1.19956 0.94634 0.92784 0.94344 1.21885 0.98762 0.90414 0.98982 0.88334 1.23226 1.03053 0.93529 0.96014 1.21907 0.85106 0.95204 0.95046 0.86633 1.44338 1.15373 1.05076 1.68735 1.18634 0.89568 0.86088 0.89656 1.67122 1.25794 1.16647 1.19147 1.22439 0.98052 0.87339 0.93452 1.21052 0.96165 0.97774 1.09203 1.24799 1.12221 0.86917 0.92330 1.86448 1.61827 1.61284 1.26737 0.93842 0.79010 0.76702 0.83544 1.21413 0.96970 0.94423 0.90828 1.21694 1.00122 0.94445 1.10027 1.23811 1.00767 0.94471 0.99555 1.21385 0.91868 1.00648 1.01495 1.21865 1.01931 0.91887 0.93620 1.21519 0.93889 0.99606 1.00862 1.21643 0.94800 0.97561 0.94483 0.91893 0.92074 0.85217 0.87252 0.91978 0.76243 0.81808 0.87407 0.75614 1.22225 1.21623 0.83368 0.82817 0.91826 0.86188 0.82515 0.82501 0.82912 0.83960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.73 9.84 -56.20 -0.55 -2.28 16 3 C 0.50 3.57 7.85 70.33 0.55 4.12 16 4 O -0.52 -5.43 13.06 19.94 0.26 -5.17 16 5 C -0.15 -0.60 5.87 -20.10 -0.12 -0.72 16 6 C -0.02 -0.02 5.35 -19.60 -0.10 -0.13 16 7 C -0.08 -0.13 2.67 -10.92 -0.03 -0.16 16 8 H 0.10 0.72 5.79 -2.39 -0.01 0.70 16 9 C -0.12 0.05 7.32 31.12 0.23 0.28 16 10 C 0.13 -0.23 4.07 45.52 0.19 -0.04 16 11 H 0.12 -0.60 6.17 -2.39 -0.01 -0.61 16 12 N -0.70 -2.35 5.44 -322.04 -1.75 -4.10 16 13 C 0.40 2.27 7.65 133.06 1.02 3.29 16 14 N -0.57 -4.82 10.39 -193.27 -2.01 -6.82 16 15 C 0.14 0.65 9.84 84.62 0.83 1.48 16 16 C -0.24 -0.54 5.40 -19.76 -0.11 -0.65 16 17 C -0.05 -0.02 2.83 71.24 0.20 0.18 16 18 O -0.56 -0.30 12.78 -148.98 -1.90 -2.20 16 19 Si 0.76 -0.36 29.82 68.60 2.05 1.68 16 20 C -0.01 -0.02 9.77 22.44 0.22 0.20 16 21 C -0.24 -0.46 9.28 22.50 0.21 -0.25 16 22 C -0.15 0.37 7.16 31.21 0.22 0.59 16 23 C -0.14 0.46 9.27 22.23 0.21 0.67 16 24 C -0.08 0.38 10.04 22.33 0.22 0.60 16 25 C -0.14 0.51 10.03 22.23 0.22 0.73 16 26 C -0.07 -0.01 9.62 22.54 0.22 0.20 16 27 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 28 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 29 H 0.13 -0.77 8.14 -2.39 -0.02 -0.79 16 30 H 0.11 -0.37 8.09 -2.39 -0.02 -0.39 16 31 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.40 2.25 8.83 -92.71 -0.82 1.44 16 33 H 0.17 0.09 4.88 -2.91 -0.01 0.08 16 34 H 0.11 0.12 7.96 -2.39 -0.02 0.10 16 35 H 0.39 -2.73 8.70 -74.05 -0.64 -3.37 16 36 H -0.29 -1.88 7.11 99.48 0.71 -1.17 16 37 H -0.29 -1.42 7.11 99.48 0.71 -0.71 16 38 H 0.15 -0.19 8.06 -2.91 -0.02 -0.22 16 39 H 0.15 -0.45 6.06 -2.91 -0.02 -0.47 16 40 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.12 -0.91 5.68 -2.38 -0.01 -0.92 16 42 H 0.16 -1.29 5.70 -2.91 -0.02 -1.31 16 43 H 0.16 -1.63 8.06 -2.91 -0.02 -1.65 16 44 H 0.15 -1.25 8.06 -2.91 -0.02 -1.27 16 45 H 0.14 -0.24 7.63 -2.91 -0.02 -0.26 16 Total: 0.00 -19.00 370.48 1.10 -17.90 By element: Atomic # 1 Polarization: -10.22 SS G_CDS: -0.37 Total: -10.59 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 5.38 Total: 11.58 kcal Atomic # 7 Polarization: -7.17 SS G_CDS: -3.76 Total: -10.93 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -2.20 Total: -9.65 kcal Atomic # 14 Polarization: -0.36 SS G_CDS: 2.05 Total: 1.68 kcal Total: -19.00 1.10 -17.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15105876_13915762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.034 kcal (2) G-P(sol) polarization free energy of solvation -18.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds