Wall clock time and date at job start Mon Mar 8 2021 07:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34707 * 116.99613 * 2 1 4 4 O 1.21469 * 120.00402 * 359.97438 * 3 2 1 5 5 C 1.47728 * 120.00081 * 179.97438 * 3 2 1 6 6 C 1.39610 * 120.15394 * 186.60880 * 5 3 2 7 7 C 1.50698 * 120.07205 * 0.02562 * 6 5 3 8 8 H 1.08996 * 112.85291 * 32.82967 * 7 6 5 9 9 C 1.53783 * 113.60936 * 164.13231 * 7 6 5 10 10 C 1.53782 * 87.08279 * 139.97950 * 9 7 6 11 11 H 1.08993 * 113.61905 * 220.02152 * 10 9 7 12 12 N 1.46504 * 113.69192 * 89.12034 * 10 9 7 13 13 C 1.38607 * 119.99702 * 107.46666 * 12 10 9 14 14 N 1.29695 * 124.95213 * 359.69996 * 13 12 10 15 15 C 1.32121 * 116.86747 * 179.81171 * 14 13 12 16 16 C 1.33322 * 114.57925 * 0.47400 * 15 14 13 17 17 C 1.50697 * 125.95051 * 179.75410 * 16 15 14 18 18 O 1.42897 * 109.47455 * 65.02420 * 17 16 15 19 19 Si 1.86304 * 109.46980 * 185.02508 * 17 16 15 20 20 S 1.70965 * 124.95209 * 180.02562 * 13 12 10 21 21 C 1.53775 * 113.61306 * 261.62535 * 7 6 5 22 22 C 1.37964 * 119.84662 * 180.27238 * 6 5 3 23 23 C 1.38346 * 120.15125 * 359.45375 * 22 6 5 24 24 C 1.38392 * 120.30425 * 0.29670 * 23 22 6 25 25 C 1.37922 * 120.14739 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47444 * 300.00294 * 1 2 3 27 27 H 1.08997 * 109.47072 * 60.00822 * 1 2 3 28 28 H 1.09006 * 109.46765 * 180.02562 * 1 2 3 29 29 H 1.08996 * 113.61434 * 254.52583 * 9 7 6 30 30 H 1.08997 * 113.61586 * 25.43272 * 9 7 6 31 31 H 0.97000 * 119.99955 * 287.47274 * 12 10 9 32 32 H 1.07994 * 122.70740 * 180.22575 * 15 14 13 33 33 H 1.09000 * 109.47233 * 305.02056 * 17 16 15 34 34 H 0.96696 * 114.00053 * 59.99699 * 18 17 16 35 35 H 1.48504 * 109.99702 * 179.97438 * 19 17 16 36 36 H 1.48501 * 109.99939 * 301.31295 * 19 17 16 37 37 H 1.09003 * 113.61784 * 334.57532 * 21 7 6 38 38 H 1.09004 * 113.61334 * 105.38966 * 21 7 6 39 39 H 1.07997 * 119.92037 * 179.73281 * 22 6 5 40 40 H 1.07998 * 119.84652 * 180.28080 * 23 22 6 41 41 H 1.07993 * 119.92840 * 179.97438 * 24 23 22 42 42 H 1.08002 * 120.07418 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.1762 2.5120 0.1395 7 6 3.3607 3.7703 0.2901 8 1 2.4252 3.6070 0.8250 9 6 4.1695 4.9697 0.8118 10 6 3.3847 5.8340 -0.1892 11 1 3.9938 6.5898 -0.6851 12 7 2.1360 6.3755 0.3529 13 6 2.0403 7.7242 0.6579 14 7 2.9945 8.5896 0.5074 15 6 2.7271 9.8382 0.8465 16 6 1.4938 10.0341 1.3135 17 6 0.9218 11.3489 1.7772 18 8 0.8414 12.2500 0.6710 19 14 -0.7822 11.0722 2.4778 20 16 0.6496 8.4880 1.2948 21 6 3.1915 4.5553 -1.0214 22 6 5.5542 2.5777 0.1335 23 6 6.3044 1.4227 0.0016 24 6 5.6791 0.1953 -0.1313 25 6 4.3021 0.1159 -0.1325 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.9649 5.2142 1.8540 30 1 5.2353 4.9064 0.5922 31 1 1.3764 5.7901 0.4985 32 1 3.4505 10.6350 0.7565 33 1 1.5662 11.7745 2.5464 34 1 0.2829 11.9353 -0.0529 35 1 -1.3570 12.3614 2.9392 36 1 -1.6619 10.4629 1.4482 37 1 3.9899 4.3786 -1.7422 38 1 2.1977 4.4640 -1.4598 39 1 6.0485 3.5323 0.2366 40 1 7.3829 1.4793 0.0022 41 1 6.2705 -0.7024 -0.2343 42 1 3.8154 -0.8426 -0.2367 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15105876_15704118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:23:52 Heat of formation + Delta-G solvation = 3.810507 kcal Electronic energy + Delta-G solvation = -27230.598629 eV Core-core repulsion = 23270.711015 eV Total energy + Delta-G solvation = -3959.887613 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.01071 -40.93042 -40.32429 -39.18261 -37.89129 -37.43426 -35.23126 -32.66265 -32.09755 -30.96385 -28.79942 -26.93689 -26.76929 -26.12811 -24.85436 -24.47848 -23.08552 -21.88102 -21.24385 -20.06141 -19.48421 -19.03133 -18.14705 -18.00749 -17.42459 -17.26947 -16.84971 -16.54311 -16.31332 -16.04292 -15.79888 -15.66822 -15.64150 -15.10520 -14.98340 -14.83738 -14.55037 -14.19342 -13.84283 -13.78941 -13.54885 -13.30907 -13.19972 -13.00177 -12.82880 -12.46292 -12.33532 -12.28966 -11.94855 -11.89443 -11.78579 -11.39486 -11.03624 -10.87830 -10.83876 -10.18260 -10.13418 -10.11868 -9.81548 -8.67563 -5.00950 -0.36128 0.03347 0.09108 0.25275 0.75734 1.29428 1.51517 1.59256 1.66657 1.93991 2.09166 2.17264 2.66180 3.38640 3.40175 3.53038 3.63662 3.67301 3.74494 3.80579 3.89628 3.98335 4.00440 4.11575 4.20556 4.21244 4.30288 4.33231 4.53653 4.57838 4.64183 4.67545 4.72655 4.79766 4.82886 4.92391 4.96665 5.02297 5.08780 5.19692 5.27035 5.29145 5.37448 5.59145 5.76331 5.95332 6.13411 6.40072 6.71914 7.07869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.509 3.491 4 O -0.500 6.500 5 C -0.130 4.130 6 C -0.004 4.004 7 C -0.083 4.083 8 H 0.125 0.875 9 C -0.153 4.153 10 C 0.139 3.861 11 H 0.107 0.893 12 N -0.673 5.673 13 C 0.330 3.670 14 N -0.551 5.551 15 C 0.121 3.879 16 C -0.307 4.307 17 C -0.016 4.016 18 O -0.527 6.527 19 Si 0.652 3.348 20 S 0.087 5.913 21 C -0.128 4.128 22 C -0.134 4.134 23 C -0.077 4.077 24 C -0.138 4.138 25 C -0.059 4.059 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.417 0.583 32 H 0.176 0.824 33 H 0.125 0.875 34 H 0.376 0.624 35 H -0.238 1.238 36 H -0.243 1.243 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.686 -5.168 1.008 5.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.355 3.645 4 O -0.390 6.390 5 C -0.131 4.131 6 C -0.005 4.005 7 C -0.101 4.101 8 H 0.142 0.858 9 C -0.192 4.192 10 C 0.031 3.969 11 H 0.125 0.875 12 N -0.311 5.311 13 C -0.040 4.040 14 N -0.276 5.276 15 C -0.030 4.030 16 C -0.430 4.430 17 C -0.130 4.130 18 O -0.333 6.333 19 Si 0.552 3.448 20 S 0.336 5.664 21 C -0.166 4.166 22 C -0.152 4.152 23 C -0.095 4.095 24 C -0.156 4.156 25 C -0.077 4.077 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.254 0.746 32 H 0.192 0.808 33 H 0.143 0.857 34 H 0.224 0.776 35 H -0.161 1.161 36 H -0.167 1.167 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.155 0.845 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.370 -4.914 1.319 5.102 hybrid contribution 0.244 0.417 -1.175 1.270 sum -0.126 -4.497 0.145 4.501 Atomic orbital electron populations 1.23320 0.75515 1.04073 1.02757 1.86546 1.23889 1.32607 1.84167 1.21222 0.89101 0.81494 0.72722 1.90749 1.66934 1.35469 1.45838 1.18951 0.89016 0.94669 1.10474 1.19808 0.93766 0.93116 0.93788 1.22026 0.99476 0.89863 0.98760 0.85787 1.23721 0.99884 0.95158 1.00439 1.21817 0.85196 0.95076 0.94775 0.87482 1.43759 1.15952 1.02574 1.68850 1.23708 0.93265 0.90615 0.96455 1.66493 1.30900 1.01643 1.28554 1.21331 0.94617 0.92248 0.94837 1.25494 0.99113 0.98590 1.19809 1.24055 1.10666 0.85962 0.92285 1.86611 1.71752 1.45436 1.29510 0.95160 0.75600 0.86239 0.87832 1.84056 1.15861 1.02255 1.64232 1.23305 1.03545 0.93633 0.96154 1.21142 0.92669 0.99394 1.01969 1.21508 1.00615 0.92366 0.95032 1.21214 0.94343 0.98417 1.01633 1.21493 0.94056 0.97782 0.94406 0.91661 0.91661 0.87795 0.90603 0.88535 0.74551 0.80751 0.85735 0.77588 1.16138 1.16731 0.88636 0.90229 0.84483 0.85080 0.84962 0.84413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.05 10.56 101.05 1.07 1.02 16 2 O -0.36 -0.42 9.84 -40.51 -0.40 -0.81 16 3 C 0.51 1.06 7.84 34.61 0.27 1.33 16 4 O -0.50 -1.56 13.06 -19.24 -0.25 -1.81 16 5 C -0.13 -0.16 5.87 -104.98 -0.62 -0.77 16 6 C 0.00 0.00 5.34 -104.21 -0.56 -0.56 16 7 C -0.08 -0.01 2.66 -90.96 -0.24 -0.25 16 8 H 0.12 0.18 5.79 -51.93 -0.30 -0.12 16 9 C -0.15 0.08 7.15 -25.92 -0.19 -0.10 16 10 C 0.14 0.02 4.44 -67.11 -0.30 -0.28 16 11 H 0.11 0.13 7.67 -51.93 -0.40 -0.27 16 12 N -0.67 -0.36 5.42 -54.99 -0.30 -0.66 16 13 C 0.33 0.70 8.09 -87.68 -0.71 -0.01 16 14 N -0.55 -1.91 9.83 -15.21 -0.15 -2.06 16 15 C 0.12 0.29 11.24 -19.14 -0.22 0.07 16 16 C -0.31 -0.40 5.73 -36.03 -0.21 -0.61 16 17 C -0.02 -0.01 2.99 36.00 0.11 0.10 16 18 O -0.53 -0.86 12.88 -35.23 -0.45 -1.32 16 19 Si 0.65 -0.06 31.07 -169.99 -5.28 -5.34 16 20 S 0.09 0.08 20.59 -107.50 -2.21 -2.14 16 21 C -0.13 0.03 7.33 -25.92 -0.19 -0.16 16 22 C -0.13 0.11 9.27 -39.64 -0.37 -0.26 16 23 C -0.08 0.11 10.04 -39.48 -0.40 -0.29 16 24 C -0.14 0.17 10.03 -39.64 -0.40 -0.23 16 25 C -0.06 0.01 9.62 -39.17 -0.38 -0.37 16 26 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 27 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 28 H 0.10 -0.36 8.14 -51.93 -0.42 -0.78 16 29 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 30 H 0.10 -0.16 5.67 -51.93 -0.29 -0.46 16 31 H 0.42 -0.25 8.83 -40.82 -0.36 -0.61 16 32 H 0.18 0.19 8.06 -52.49 -0.42 -0.23 16 33 H 0.13 -0.08 7.96 -51.93 -0.41 -0.49 16 34 H 0.38 -0.34 8.70 45.56 0.40 0.05 16 35 H -0.24 -0.60 7.11 56.52 0.40 -0.19 16 36 H -0.24 -0.44 7.11 56.52 0.40 -0.04 16 37 H 0.10 -0.08 8.09 -51.93 -0.42 -0.50 16 38 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 39 H 0.14 -0.33 5.71 -52.49 -0.30 -0.63 16 40 H 0.13 -0.45 8.06 -52.49 -0.42 -0.87 16 41 H 0.13 -0.41 8.06 -52.49 -0.42 -0.84 16 42 H 0.14 -0.18 7.63 -52.49 -0.40 -0.58 16 LS Contribution 366.02 15.07 5.52 5.52 Total: 0.00 -6.42 366.02 -11.91 -18.33 By element: Atomic # 1 Polarization: -3.27 SS G_CDS: -5.07 Total: -8.34 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -3.31 Total: -1.36 kcal Atomic # 7 Polarization: -2.28 SS G_CDS: -0.45 Total: -2.73 kcal Atomic # 8 Polarization: -2.84 SS G_CDS: -1.10 Total: -3.94 kcal Atomic # 14 Polarization: -0.06 SS G_CDS: -5.28 Total: -5.34 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.21 Total: -2.14 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -6.42 -11.91 -18.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15105876_15704118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.141 kcal (2) G-P(sol) polarization free energy of solvation -6.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds