Wall clock time and date at job start Mon Mar 8 2021 07:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34707 * 116.99613 * 2 1 4 4 O 1.21469 * 120.00402 * 359.97438 * 3 2 1 5 5 C 1.47728 * 120.00081 * 179.97438 * 3 2 1 6 6 C 1.39610 * 120.15394 * 186.60880 * 5 3 2 7 7 C 1.50698 * 120.07205 * 0.02562 * 6 5 3 8 8 H 1.08996 * 112.85291 * 32.82967 * 7 6 5 9 9 C 1.53783 * 113.60936 * 164.13231 * 7 6 5 10 10 C 1.53782 * 87.08279 * 139.97950 * 9 7 6 11 11 H 1.08993 * 113.61905 * 220.02152 * 10 9 7 12 12 N 1.46504 * 113.69192 * 89.12034 * 10 9 7 13 13 C 1.38607 * 119.99702 * 107.46666 * 12 10 9 14 14 N 1.29695 * 124.95213 * 359.69996 * 13 12 10 15 15 C 1.32121 * 116.86747 * 179.81171 * 14 13 12 16 16 C 1.33322 * 114.57925 * 0.47400 * 15 14 13 17 17 C 1.50697 * 125.95051 * 179.75410 * 16 15 14 18 18 O 1.42897 * 109.47455 * 65.02420 * 17 16 15 19 19 Si 1.86304 * 109.46980 * 185.02508 * 17 16 15 20 20 S 1.70965 * 124.95209 * 180.02562 * 13 12 10 21 21 C 1.53775 * 113.61306 * 261.62535 * 7 6 5 22 22 C 1.37964 * 119.84662 * 180.27238 * 6 5 3 23 23 C 1.38346 * 120.15125 * 359.45375 * 22 6 5 24 24 C 1.38392 * 120.30425 * 0.29670 * 23 22 6 25 25 C 1.37922 * 120.14739 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47444 * 300.00294 * 1 2 3 27 27 H 1.08997 * 109.47072 * 60.00822 * 1 2 3 28 28 H 1.09006 * 109.46765 * 180.02562 * 1 2 3 29 29 H 1.08996 * 113.61434 * 254.52583 * 9 7 6 30 30 H 1.08997 * 113.61586 * 25.43272 * 9 7 6 31 31 H 0.97000 * 119.99955 * 287.47274 * 12 10 9 32 32 H 1.07994 * 122.70740 * 180.22575 * 15 14 13 33 33 H 1.09000 * 109.47233 * 305.02056 * 17 16 15 34 34 H 0.96696 * 114.00053 * 59.99699 * 18 17 16 35 35 H 1.48504 * 109.99702 * 179.97438 * 19 17 16 36 36 H 1.48501 * 109.99939 * 301.31295 * 19 17 16 37 37 H 1.09003 * 113.61784 * 334.57532 * 21 7 6 38 38 H 1.09004 * 113.61334 * 105.38966 * 21 7 6 39 39 H 1.07997 * 119.92037 * 179.73281 * 22 6 5 40 40 H 1.07998 * 119.84652 * 180.28080 * 23 22 6 41 41 H 1.07993 * 119.92840 * 179.97438 * 24 23 22 42 42 H 1.08002 * 120.07418 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.1762 2.5120 0.1395 7 6 3.3607 3.7703 0.2901 8 1 2.4252 3.6070 0.8250 9 6 4.1695 4.9697 0.8118 10 6 3.3847 5.8340 -0.1892 11 1 3.9938 6.5898 -0.6851 12 7 2.1360 6.3755 0.3529 13 6 2.0403 7.7242 0.6579 14 7 2.9945 8.5896 0.5074 15 6 2.7271 9.8382 0.8465 16 6 1.4938 10.0341 1.3135 17 6 0.9218 11.3489 1.7772 18 8 0.8414 12.2500 0.6710 19 14 -0.7822 11.0722 2.4778 20 16 0.6496 8.4880 1.2948 21 6 3.1915 4.5553 -1.0214 22 6 5.5542 2.5777 0.1335 23 6 6.3044 1.4227 0.0016 24 6 5.6791 0.1953 -0.1313 25 6 4.3021 0.1159 -0.1325 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.9649 5.2142 1.8540 30 1 5.2353 4.9064 0.5922 31 1 1.3764 5.7901 0.4985 32 1 3.4505 10.6350 0.7565 33 1 1.5662 11.7745 2.5464 34 1 0.2829 11.9353 -0.0529 35 1 -1.3570 12.3614 2.9392 36 1 -1.6619 10.4629 1.4482 37 1 3.9899 4.3786 -1.7422 38 1 2.1977 4.4640 -1.4598 39 1 6.0485 3.5323 0.2366 40 1 7.3829 1.4793 0.0022 41 1 6.2705 -0.7024 -0.2343 42 1 3.8154 -0.8426 -0.2367 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15105876_15704118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:23:51 Heat of formation + Delta-G solvation = 9.412035 kcal Electronic energy + Delta-G solvation = -27230.355728 eV Core-core repulsion = 23270.711015 eV Total energy + Delta-G solvation = -3959.644713 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.03061 -41.01030 -40.38921 -39.15220 -37.97421 -37.51636 -35.28396 -32.60218 -32.06646 -31.03757 -28.73555 -26.97911 -26.76276 -26.17071 -24.83363 -24.53717 -23.07997 -21.88556 -21.29948 -20.12383 -19.54112 -19.03472 -18.22066 -18.06540 -17.46613 -17.29130 -16.87051 -16.56444 -16.37785 -16.07386 -15.83063 -15.67220 -15.60417 -15.13490 -15.03168 -14.87682 -14.52468 -14.20657 -13.94706 -13.80782 -13.51653 -13.28827 -13.11821 -12.98217 -12.85922 -12.48829 -12.40894 -12.28624 -12.02778 -11.91006 -11.81760 -11.39893 -11.09404 -10.94281 -10.90467 -10.30295 -10.24710 -10.05284 -9.74835 -8.76013 -5.03379 -0.33817 -0.08220 -0.00620 0.33649 0.65774 1.24955 1.47535 1.53559 1.67900 1.86863 1.95167 2.11723 2.72303 3.37878 3.40584 3.55250 3.62047 3.67784 3.72640 3.85230 3.91573 3.97356 4.14428 4.20760 4.26769 4.29677 4.39719 4.43136 4.56798 4.61125 4.66410 4.70255 4.72030 4.79007 4.82358 4.95388 4.99831 5.01946 5.08219 5.22549 5.28399 5.31369 5.47919 5.59687 5.87471 5.88885 6.09240 6.43113 6.64346 6.97426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.503 3.497 4 O -0.519 6.519 5 C -0.151 4.151 6 C -0.017 4.017 7 C -0.078 4.078 8 H 0.108 0.892 9 C -0.143 4.143 10 C 0.140 3.860 11 H 0.098 0.902 12 N -0.670 5.670 13 C 0.319 3.681 14 N -0.574 5.574 15 C 0.106 3.894 16 C -0.305 4.305 17 C -0.020 4.020 18 O -0.542 6.542 19 Si 0.719 3.281 20 S 0.105 5.895 21 C -0.120 4.120 22 C -0.138 4.138 23 C -0.076 4.076 24 C -0.140 4.140 25 C -0.066 4.066 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.128 0.872 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.421 0.579 32 H 0.182 0.818 33 H 0.137 0.863 34 H 0.386 0.614 35 H -0.273 1.273 36 H -0.268 1.268 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.631 -5.821 1.161 6.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.278 6.278 3 C 0.350 3.650 4 O -0.411 6.411 5 C -0.152 4.152 6 C -0.017 4.017 7 C -0.096 4.096 8 H 0.126 0.874 9 C -0.182 4.182 10 C 0.032 3.968 11 H 0.116 0.884 12 N -0.308 5.308 13 C -0.052 4.052 14 N -0.300 5.300 15 C -0.044 4.044 16 C -0.428 4.428 17 C -0.133 4.133 18 O -0.350 6.350 19 Si 0.622 3.378 20 S 0.355 5.645 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.094 4.094 24 C -0.158 4.158 25 C -0.084 4.084 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.146 0.854 29 H 0.086 0.914 30 H 0.129 0.871 31 H 0.259 0.741 32 H 0.199 0.801 33 H 0.155 0.845 34 H 0.235 0.765 35 H -0.199 1.199 36 H -0.193 1.193 37 H 0.121 0.879 38 H 0.087 0.913 39 H 0.170 0.830 40 H 0.173 0.827 41 H 0.171 0.829 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.580 -5.598 1.470 5.816 hybrid contribution -0.080 0.597 -1.239 1.378 sum 0.500 -5.001 0.231 5.031 Atomic orbital electron populations 1.23530 0.74428 1.05644 1.02594 1.86539 1.25067 1.32278 1.83956 1.21524 0.89669 0.81474 0.72297 1.90733 1.67440 1.35977 1.46903 1.19096 0.88654 0.95583 1.11915 1.19927 0.94489 0.92874 0.94405 1.21870 0.98942 0.90172 0.98649 0.87397 1.23684 1.00553 0.94336 0.99638 1.21801 0.85078 0.94823 0.95107 0.88422 1.43813 1.16310 1.02241 1.68484 1.23886 0.93658 0.90968 0.96652 1.66491 1.31819 1.02237 1.29467 1.21500 0.95293 0.92230 0.95419 1.25610 0.98879 0.99032 1.19237 1.24244 1.11303 0.85521 0.92247 1.86586 1.72212 1.46017 1.30188 0.94360 0.73778 0.83688 0.85966 1.83956 1.15008 1.01780 1.63798 1.23251 1.03174 0.93288 0.96159 1.21366 0.92131 1.00481 1.01612 1.21846 1.01867 0.91943 0.93744 1.21514 0.94008 0.99475 1.00821 1.21655 0.94711 0.97644 0.94403 0.91806 0.91879 0.85375 0.91447 0.87060 0.74058 0.80096 0.84518 0.76518 1.19862 1.19336 0.87859 0.91320 0.83020 0.82712 0.82903 0.83795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.56 113.37 1.20 1.14 16 2 O -0.36 -1.19 9.84 -56.16 -0.55 -1.74 16 3 C 0.50 2.79 7.84 70.33 0.55 3.34 16 4 O -0.52 -4.18 13.06 19.94 0.26 -3.92 16 5 C -0.15 -0.48 5.87 -20.10 -0.12 -0.60 16 6 C -0.02 -0.02 5.34 -19.60 -0.10 -0.13 16 7 C -0.08 -0.09 2.66 -11.02 -0.03 -0.12 16 8 H 0.11 0.50 5.79 -2.39 -0.01 0.49 16 9 C -0.14 0.10 7.15 31.12 0.22 0.32 16 10 C 0.14 0.15 4.44 45.52 0.20 0.35 16 11 H 0.10 0.32 7.67 -2.39 -0.02 0.30 16 12 N -0.67 -1.41 5.42 -327.88 -1.78 -3.19 16 13 C 0.32 1.58 8.09 179.32 1.45 3.03 16 14 N -0.57 -4.40 9.83 -202.03 -1.99 -6.39 16 15 C 0.11 0.55 11.24 83.54 0.94 1.49 16 16 C -0.30 -0.83 5.73 24.57 0.14 -0.69 16 17 C -0.02 -0.01 2.99 71.23 0.21 0.20 16 18 O -0.54 -1.77 12.88 -148.98 -1.92 -3.69 16 19 Si 0.72 -0.06 31.07 68.60 2.13 2.07 16 20 S 0.11 0.22 20.59 -56.49 -1.16 -0.95 16 21 C -0.12 -0.05 7.33 31.12 0.23 0.18 16 22 C -0.14 0.33 9.27 22.23 0.21 0.53 16 23 C -0.08 0.32 10.04 22.33 0.22 0.55 16 24 C -0.14 0.49 10.03 22.23 0.22 0.71 16 25 C -0.07 0.02 9.62 22.54 0.22 0.23 16 26 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 27 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.13 -0.92 8.14 -2.38 -0.02 -0.94 16 29 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.11 -0.43 5.67 -2.39 -0.01 -0.45 16 31 H 0.42 0.02 8.83 -92.71 -0.82 -0.80 16 32 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 33 H 0.14 -0.25 7.96 -2.39 -0.02 -0.27 16 34 H 0.39 -0.64 8.70 -74.06 -0.64 -1.29 16 35 H -0.27 -1.57 7.11 99.48 0.71 -0.86 16 36 H -0.27 -1.05 7.11 99.48 0.71 -0.34 16 37 H 0.10 -0.13 8.09 -2.39 -0.02 -0.15 16 38 H 0.07 0.19 8.14 -2.38 -0.02 0.17 16 39 H 0.15 -0.92 5.71 -2.91 -0.02 -0.93 16 40 H 0.16 -1.44 8.06 -2.91 -0.02 -1.46 16 41 H 0.15 -1.23 8.06 -2.91 -0.02 -1.26 16 42 H 0.14 -0.34 7.63 -2.91 -0.02 -0.37 16 Total: 0.00 -15.52 366.02 0.42 -15.10 By element: Atomic # 1 Polarization: -7.50 SS G_CDS: -0.34 Total: -7.83 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 5.76 Total: 10.54 kcal Atomic # 7 Polarization: -5.81 SS G_CDS: -3.77 Total: -9.58 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -2.21 Total: -9.35 kcal Atomic # 14 Polarization: -0.06 SS G_CDS: 2.13 Total: 2.07 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -1.16 Total: -0.95 kcal Total: -15.52 0.42 -15.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15105876_15704118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.516 kcal (2) G-P(sol) polarization free energy of solvation -15.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds