Wall clock time and date at job start Mon Mar 8 2021 07:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34712 * 117.00182 * 2 1 4 4 O 1.21474 * 119.99681 * 0.02562 * 3 2 1 5 5 C 1.47728 * 120.00056 * 180.02562 * 3 2 1 6 6 C 1.39609 * 120.14603 * 186.44818 * 5 3 2 7 7 C 1.50699 * 120.07851 * 359.97438 * 6 5 3 8 8 H 1.08994 * 112.84755 * 18.97403 * 7 6 5 9 9 C 1.53779 * 113.68871 * 150.24378 * 7 6 5 10 10 C 1.53775 * 87.08269 * 139.99190 * 9 7 6 11 11 H 1.09005 * 113.69122 * 220.00510 * 10 9 7 12 12 N 1.46503 * 113.61524 * 89.11349 * 10 9 7 13 13 C 1.38614 * 119.99841 * 107.50626 * 12 10 9 14 14 N 1.29685 * 124.94801 * 180.02562 * 13 12 10 15 15 C 1.32114 * 116.86972 * 179.97438 * 14 13 12 16 16 C 1.50701 * 122.71428 * 179.97438 * 15 14 13 17 17 O 1.42896 * 109.47183 * 150.02830 * 16 15 14 18 18 Si 1.86302 * 109.46942 * 30.02858 * 16 15 14 19 19 C 1.33331 * 114.57520 * 0.02562 * 15 14 13 20 20 C 1.50706 * 125.94647 * 179.97438 * 19 15 14 21 21 S 1.70968 * 124.95039 * 359.69327 * 13 12 10 22 22 C 1.53780 * 87.08139 * 334.56364 * 10 9 7 23 23 C 1.37969 * 119.84334 * 179.72546 * 6 5 3 24 24 C 1.38349 * 120.14980 * 0.29421 * 23 6 5 25 25 C 1.38392 * 120.30261 * 359.95950 * 24 23 6 26 26 C 1.37922 * 120.14985 * 0.03695 * 25 24 23 27 27 H 1.08997 * 109.47734 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46980 * 299.99865 * 1 2 3 29 29 H 1.09002 * 109.47427 * 59.99039 * 1 2 3 30 30 H 1.09008 * 113.61276 * 254.54099 * 9 7 6 31 31 H 1.09004 * 113.61708 * 25.43629 * 9 7 6 32 32 H 0.97003 * 119.99884 * 287.50158 * 12 10 9 33 33 H 1.08999 * 109.47002 * 270.03010 * 16 15 14 34 34 H 0.96701 * 113.99917 * 300.00147 * 17 16 15 35 35 H 1.48497 * 109.99718 * 180.02562 * 18 16 15 36 36 H 1.48505 * 109.99730 * 301.31752 * 18 16 15 37 37 H 1.08999 * 109.47025 * 90.00371 * 20 19 15 38 38 H 1.09001 * 109.46504 * 209.99577 * 20 19 15 39 39 H 1.08991 * 109.47641 * 329.99584 * 20 19 15 40 40 H 1.08997 * 113.61727 * 270.88533 * 22 10 9 41 41 H 1.08999 * 113.61384 * 139.98202 * 22 10 9 42 42 H 1.07999 * 119.92665 * 180.26954 * 23 6 5 43 43 H 1.08001 * 119.84886 * 179.97438 * 24 23 6 44 44 H 1.07996 * 119.92014 * 180.02562 * 25 24 23 45 45 H 1.08002 * 120.07374 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.1763 2.5122 0.1350 7 6 3.3610 3.7711 0.2819 8 1 2.3351 3.5768 0.5947 9 6 4.0590 4.8667 1.1048 10 6 3.5013 5.8761 0.0876 11 1 4.2044 6.6664 -0.1757 12 7 2.1740 6.3886 0.4366 13 6 2.0307 7.6913 0.8880 14 7 0.9053 8.2419 1.2229 15 6 0.9534 9.4969 1.6331 16 6 -0.2739 10.2639 2.0531 17 8 0.0844 11.2320 3.0413 18 14 -1.5294 9.0857 2.7647 19 6 2.1753 10.0302 1.6445 20 6 2.5234 11.4354 2.0634 21 16 3.3128 8.8038 1.0920 22 6 3.4683 4.7187 -0.9245 23 6 5.5545 2.5765 0.1394 24 6 6.3044 1.4218 0.0037 25 6 5.6789 0.1953 -0.1364 26 6 4.3019 0.1167 -0.1424 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 3.6500 4.9866 2.1081 31 1 5.1465 4.7934 1.0960 32 1 1.3954 5.8163 0.3517 33 1 -0.7004 10.7697 1.1868 34 1 0.4713 10.8521 3.8419 35 1 -2.7448 9.8298 3.1821 36 1 -1.8866 8.0548 1.7571 37 1 2.7384 11.4533 3.1318 38 1 3.4004 11.7724 1.5106 39 1 1.6836 12.0966 1.8506 40 1 4.3943 4.6050 -1.4881 41 1 2.5824 4.7192 -1.5595 42 1 6.0490 3.5304 0.2485 43 1 7.3830 1.4779 0.0073 44 1 6.2703 -0.7021 -0.2415 45 1 3.8150 -0.8411 -0.2522 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15105876_15704122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:23:57 Heat of formation + Delta-G solvation = 2.285390 kcal Electronic energy + Delta-G solvation = -29461.520795 eV Core-core repulsion = 25346.029429 eV Total energy + Delta-G solvation = -4115.491366 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.07296 -41.04109 -40.61961 -39.33849 -37.69328 -37.47483 -35.29880 -32.75879 -32.63109 -31.65964 -29.13829 -28.78229 -26.87895 -26.42648 -25.48207 -24.89297 -24.24832 -23.16189 -21.97718 -20.77935 -20.32482 -19.08846 -18.75772 -18.12296 -17.80121 -17.60434 -17.38278 -16.90190 -16.63371 -16.48286 -16.01884 -15.74735 -15.59464 -15.52243 -15.12294 -14.92061 -14.64644 -14.24619 -14.10952 -14.06324 -13.82756 -13.68616 -13.60340 -13.32657 -13.28405 -13.18806 -12.99731 -12.70286 -12.59811 -12.39097 -12.21702 -11.88585 -11.80990 -11.78552 -11.51336 -10.94938 -10.72766 -10.47004 -10.22777 -10.15379 -9.91547 -9.84801 -8.53714 -4.78931 -0.39929 0.10970 0.20931 0.26344 0.87786 1.45639 1.47755 1.64212 1.88816 1.96789 2.01847 2.32228 2.61882 3.28910 3.42274 3.47214 3.52127 3.60399 3.62399 3.76332 3.83345 3.93942 4.05557 4.12812 4.21488 4.23004 4.23625 4.30085 4.40253 4.42201 4.53223 4.56641 4.60823 4.67173 4.70689 4.83180 4.84387 4.89017 4.92470 4.97126 5.05149 5.17079 5.21421 5.23423 5.33172 5.38557 5.62644 5.73334 5.76279 6.35829 6.56795 6.70228 7.05622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.510 3.490 4 O -0.498 6.498 5 C -0.129 4.129 6 C -0.003 4.003 7 C -0.103 4.103 8 H 0.144 0.856 9 C -0.152 4.152 10 C 0.128 3.872 11 H 0.097 0.903 12 N -0.675 5.675 13 C 0.324 3.676 14 N -0.545 5.545 15 C 0.067 3.933 16 C -0.033 4.033 17 O -0.536 6.536 18 Si 0.714 3.286 19 C -0.240 4.240 20 C -0.065 4.065 21 S 0.098 5.902 22 C -0.126 4.126 23 C -0.133 4.133 24 C -0.077 4.077 25 C -0.137 4.137 26 C -0.058 4.058 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.415 0.585 33 H 0.120 0.880 34 H 0.379 0.621 35 H -0.262 1.262 36 H -0.252 1.252 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.135 0.865 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.200 -4.240 1.006 6.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.356 3.644 4 O -0.389 6.389 5 C -0.130 4.130 6 C -0.003 4.003 7 C -0.120 4.120 8 H 0.161 0.839 9 C -0.191 4.191 10 C 0.022 3.978 11 H 0.115 0.885 12 N -0.315 5.315 13 C -0.048 4.048 14 N -0.272 5.272 15 C -0.063 4.063 16 C -0.146 4.146 17 O -0.341 6.341 18 Si 0.615 3.385 19 C -0.363 4.363 20 C -0.124 4.124 21 S 0.347 5.653 22 C -0.164 4.164 23 C -0.151 4.151 24 C -0.095 4.095 25 C -0.155 4.155 26 C -0.077 4.077 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.254 0.746 33 H 0.137 0.863 34 H 0.226 0.774 35 H -0.188 1.188 36 H -0.176 1.176 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.153 0.847 43 H 0.149 0.851 44 H 0.151 0.849 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.691 -4.304 0.239 6.371 hybrid contribution -0.811 0.219 -0.480 0.968 sum 3.880 -4.085 -0.241 5.639 Atomic orbital electron populations 1.23339 0.75397 1.04132 1.02861 1.86545 1.23987 1.32497 1.84052 1.21269 0.89132 0.81491 0.72494 1.90651 1.66897 1.35132 1.46172 1.18941 0.88983 0.94723 1.10393 1.19790 0.93682 0.93081 0.93791 1.22475 1.02291 0.89819 0.97430 0.83870 1.23734 1.01087 0.95004 0.99242 1.21904 0.83435 0.95723 0.96756 0.88537 1.43636 1.09401 1.07933 1.70486 1.23261 0.92413 0.91623 0.97467 1.65961 1.26136 1.11097 1.24008 1.20120 0.95505 0.89382 1.01303 1.24499 0.98472 0.96734 0.94924 1.86500 1.84380 1.34130 1.29045 0.94091 0.76909 0.79037 0.88431 1.25137 0.94212 1.02049 1.14871 1.20204 1.02280 0.88992 1.00935 1.83926 1.11103 1.04389 1.65919 1.23305 1.03846 0.93143 0.96143 1.21053 0.92638 0.99280 1.02111 1.21500 1.00606 0.92362 0.95040 1.21217 0.94329 0.98440 1.01550 1.21498 0.94066 0.97801 0.94292 0.87723 0.91578 0.91610 0.90221 0.88457 0.74566 0.86300 0.77369 1.18787 1.17610 0.91074 0.92326 0.89088 0.88312 0.90052 0.84724 0.85058 0.84919 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.03 10.56 101.05 1.07 1.03 16 2 O -0.35 -0.46 9.84 -40.52 -0.40 -0.86 16 3 C 0.51 1.14 7.85 34.61 0.27 1.41 16 4 O -0.50 -1.80 12.90 -19.25 -0.25 -2.05 16 5 C -0.13 -0.14 5.87 -104.98 -0.62 -0.75 16 6 C 0.00 0.00 5.31 -104.21 -0.55 -0.55 16 7 C -0.10 0.01 3.14 -90.96 -0.29 -0.27 16 8 H 0.14 0.27 4.88 -52.67 -0.26 0.01 16 9 C -0.15 0.21 7.23 -25.92 -0.19 0.03 16 10 C 0.13 -0.12 4.31 -67.12 -0.29 -0.41 16 11 H 0.10 -0.15 7.06 -51.93 -0.37 -0.51 16 12 N -0.67 -0.70 5.42 -54.99 -0.30 -1.00 16 13 C 0.32 0.88 8.24 -87.68 -0.72 0.16 16 14 N -0.55 -2.29 8.95 -11.36 -0.10 -2.39 16 15 C 0.07 0.20 5.92 -84.18 -0.50 -0.29 16 16 C -0.03 -0.06 2.82 36.01 0.10 0.04 16 17 O -0.54 -0.33 9.90 -35.23 -0.35 -0.68 16 18 Si 0.71 1.32 32.08 -169.99 -5.45 -4.13 16 19 C -0.24 -0.51 6.50 -36.02 -0.23 -0.75 16 20 C -0.06 -0.02 8.95 36.01 0.32 0.30 16 21 S 0.10 0.13 21.69 -107.50 -2.33 -2.20 16 22 C -0.13 0.13 7.33 -25.92 -0.19 -0.06 16 23 C -0.13 0.19 9.02 -39.64 -0.36 -0.16 16 24 C -0.08 0.15 10.04 -39.48 -0.40 -0.25 16 25 C -0.14 0.21 10.03 -39.64 -0.40 -0.19 16 26 C -0.06 0.02 9.62 -39.17 -0.38 -0.36 16 27 H 0.10 -0.34 8.14 -51.93 -0.42 -0.76 16 28 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 29 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 30 H 0.08 -0.03 8.14 -51.92 -0.42 -0.45 16 31 H 0.10 -0.29 5.97 -51.93 -0.31 -0.60 16 32 H 0.42 0.58 8.83 -40.82 -0.36 0.22 16 33 H 0.12 0.27 7.96 -51.93 -0.41 -0.14 16 34 H 0.38 -1.05 8.68 45.56 0.40 -0.65 16 35 H -0.26 -1.07 7.11 56.52 0.40 -0.67 16 36 H -0.25 -1.39 7.11 56.52 0.40 -0.98 16 37 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 38 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 39 H 0.09 0.09 6.61 -51.93 -0.34 -0.25 16 40 H 0.10 -0.21 7.98 -51.93 -0.41 -0.63 16 41 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 42 H 0.14 -0.46 6.20 -52.49 -0.33 -0.78 16 43 H 0.13 -0.52 8.06 -52.49 -0.42 -0.95 16 44 H 0.13 -0.46 8.06 -52.49 -0.42 -0.88 16 45 H 0.14 -0.20 7.63 -52.49 -0.40 -0.60 16 LS Contribution 382.64 15.07 5.77 5.77 Total: 0.00 -6.99 382.64 -12.55 -19.54 By element: Atomic # 1 Polarization: -5.13 SS G_CDS: -5.80 Total: -10.93 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -3.34 Total: -1.08 kcal Atomic # 7 Polarization: -2.99 SS G_CDS: -0.40 Total: -3.39 kcal Atomic # 8 Polarization: -2.59 SS G_CDS: -1.00 Total: -3.58 kcal Atomic # 14 Polarization: 1.32 SS G_CDS: -5.45 Total: -4.13 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.33 Total: -2.20 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -6.99 -12.55 -19.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15105876_15704122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.826 kcal (2) G-P(sol) polarization free energy of solvation -6.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds