Wall clock time and date at job start Mon Mar 8 2021 07:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34712 * 117.00182 * 2 1 4 4 O 1.21474 * 119.99681 * 0.02562 * 3 2 1 5 5 C 1.47728 * 120.00056 * 180.02562 * 3 2 1 6 6 C 1.39609 * 120.14603 * 186.44818 * 5 3 2 7 7 C 1.50699 * 120.07851 * 359.97438 * 6 5 3 8 8 H 1.08994 * 112.84755 * 18.97403 * 7 6 5 9 9 C 1.53779 * 113.68871 * 150.24378 * 7 6 5 10 10 C 1.53775 * 87.08269 * 139.99190 * 9 7 6 11 11 H 1.09005 * 113.69122 * 220.00510 * 10 9 7 12 12 N 1.46503 * 113.61524 * 89.11349 * 10 9 7 13 13 C 1.38614 * 119.99841 * 107.50626 * 12 10 9 14 14 N 1.29685 * 124.94801 * 180.02562 * 13 12 10 15 15 C 1.32114 * 116.86972 * 179.97438 * 14 13 12 16 16 C 1.50701 * 122.71428 * 179.97438 * 15 14 13 17 17 O 1.42896 * 109.47183 * 150.02830 * 16 15 14 18 18 Si 1.86302 * 109.46942 * 30.02858 * 16 15 14 19 19 C 1.33331 * 114.57520 * 0.02562 * 15 14 13 20 20 C 1.50706 * 125.94647 * 179.97438 * 19 15 14 21 21 S 1.70968 * 124.95039 * 359.69327 * 13 12 10 22 22 C 1.53780 * 87.08139 * 334.56364 * 10 9 7 23 23 C 1.37969 * 119.84334 * 179.72546 * 6 5 3 24 24 C 1.38349 * 120.14980 * 0.29421 * 23 6 5 25 25 C 1.38392 * 120.30261 * 359.95950 * 24 23 6 26 26 C 1.37922 * 120.14985 * 0.03695 * 25 24 23 27 27 H 1.08997 * 109.47734 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46980 * 299.99865 * 1 2 3 29 29 H 1.09002 * 109.47427 * 59.99039 * 1 2 3 30 30 H 1.09008 * 113.61276 * 254.54099 * 9 7 6 31 31 H 1.09004 * 113.61708 * 25.43629 * 9 7 6 32 32 H 0.97003 * 119.99884 * 287.50158 * 12 10 9 33 33 H 1.08999 * 109.47002 * 270.03010 * 16 15 14 34 34 H 0.96701 * 113.99917 * 300.00147 * 17 16 15 35 35 H 1.48497 * 109.99718 * 180.02562 * 18 16 15 36 36 H 1.48505 * 109.99730 * 301.31752 * 18 16 15 37 37 H 1.08999 * 109.47025 * 90.00371 * 20 19 15 38 38 H 1.09001 * 109.46504 * 209.99577 * 20 19 15 39 39 H 1.08991 * 109.47641 * 329.99584 * 20 19 15 40 40 H 1.08997 * 113.61727 * 270.88533 * 22 10 9 41 41 H 1.08999 * 113.61384 * 139.98202 * 22 10 9 42 42 H 1.07999 * 119.92665 * 180.26954 * 23 6 5 43 43 H 1.08001 * 119.84886 * 179.97438 * 24 23 6 44 44 H 1.07996 * 119.92014 * 180.02562 * 25 24 23 45 45 H 1.08002 * 120.07374 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.1763 2.5122 0.1350 7 6 3.3610 3.7711 0.2819 8 1 2.3351 3.5768 0.5947 9 6 4.0590 4.8667 1.1048 10 6 3.5013 5.8761 0.0876 11 1 4.2044 6.6664 -0.1757 12 7 2.1740 6.3886 0.4366 13 6 2.0307 7.6913 0.8880 14 7 0.9053 8.2419 1.2229 15 6 0.9534 9.4969 1.6331 16 6 -0.2739 10.2639 2.0531 17 8 0.0844 11.2320 3.0413 18 14 -1.5294 9.0857 2.7647 19 6 2.1753 10.0302 1.6445 20 6 2.5234 11.4354 2.0634 21 16 3.3128 8.8038 1.0920 22 6 3.4683 4.7187 -0.9245 23 6 5.5545 2.5765 0.1394 24 6 6.3044 1.4218 0.0037 25 6 5.6789 0.1953 -0.1364 26 6 4.3019 0.1167 -0.1424 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 3.6500 4.9866 2.1081 31 1 5.1465 4.7934 1.0960 32 1 1.3954 5.8163 0.3517 33 1 -0.7004 10.7697 1.1868 34 1 0.4713 10.8521 3.8419 35 1 -2.7448 9.8298 3.1821 36 1 -1.8866 8.0548 1.7571 37 1 2.7384 11.4533 3.1318 38 1 3.4004 11.7724 1.5106 39 1 1.6836 12.0966 1.8506 40 1 4.3943 4.6050 -1.4881 41 1 2.5824 4.7192 -1.5595 42 1 6.0490 3.5304 0.2485 43 1 7.3830 1.4779 0.0073 44 1 6.2703 -0.7021 -0.2415 45 1 3.8150 -0.8411 -0.2522 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15105876_15704122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:23:55 Heat of formation + Delta-G solvation = 8.223945 kcal Electronic energy + Delta-G solvation = -29461.263280 eV Core-core repulsion = 25346.029429 eV Total energy + Delta-G solvation = -4115.233851 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.08105 -41.15799 -40.66713 -39.26507 -37.77081 -37.58057 -35.34450 -32.75848 -32.57520 -31.61270 -29.23442 -28.75664 -26.79634 -26.39701 -25.56323 -24.83614 -24.36576 -23.10783 -21.97874 -20.83112 -20.35710 -19.09010 -18.83681 -18.17449 -17.88217 -17.62631 -17.46691 -16.88042 -16.65952 -16.55012 -15.98942 -15.68763 -15.64959 -15.56690 -15.15738 -14.87882 -14.62257 -14.37608 -14.20210 -14.07398 -13.82723 -13.79941 -13.51292 -13.34663 -13.22009 -13.16686 -12.92341 -12.78468 -12.49963 -12.40655 -12.34541 -12.06298 -11.89898 -11.83274 -11.45846 -10.99551 -10.75926 -10.62730 -10.35436 -10.05790 -10.04206 -9.74424 -8.64168 -5.00011 -0.35866 -0.02957 0.14091 0.33165 0.74311 1.27621 1.43702 1.63958 1.68720 1.81885 1.87414 2.09844 2.71218 3.33711 3.36575 3.52900 3.54615 3.58294 3.65787 3.85502 3.95116 4.12964 4.14045 4.16924 4.21756 4.24742 4.32232 4.37849 4.42791 4.44081 4.49559 4.62800 4.69616 4.74736 4.80262 4.85031 4.88971 4.92298 4.98020 5.02253 5.07291 5.16092 5.27811 5.31582 5.36855 5.47369 5.62086 5.75824 5.88474 6.23035 6.60820 6.66256 6.93791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.360 6.360 3 C 0.503 3.497 4 O -0.522 6.522 5 C -0.154 4.154 6 C -0.014 4.014 7 C -0.105 4.105 8 H 0.119 0.881 9 C -0.140 4.140 10 C 0.128 3.872 11 H 0.108 0.892 12 N -0.675 5.675 13 C 0.309 3.691 14 N -0.577 5.577 15 C 0.051 3.949 16 C -0.026 4.026 17 O -0.538 6.538 18 Si 0.785 3.215 19 C -0.245 4.245 20 C -0.062 4.062 21 S 0.132 5.868 22 C -0.120 4.120 23 C -0.134 4.134 24 C -0.074 4.074 25 C -0.141 4.141 26 C -0.066 4.066 27 H 0.130 0.870 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.121 0.879 32 H 0.410 0.590 33 H 0.114 0.886 34 H 0.395 0.605 35 H -0.290 1.290 36 H -0.307 1.307 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.065 0.935 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.153 0.847 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.891 -4.004 1.316 8.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.277 6.277 3 C 0.351 3.649 4 O -0.414 6.414 5 C -0.155 4.155 6 C -0.014 4.014 7 C -0.123 4.123 8 H 0.136 0.864 9 C -0.179 4.179 10 C 0.022 3.978 11 H 0.126 0.874 12 N -0.314 5.314 13 C -0.062 4.062 14 N -0.305 5.305 15 C -0.079 4.079 16 C -0.140 4.140 17 O -0.344 6.344 18 Si 0.692 3.308 19 C -0.368 4.368 20 C -0.121 4.121 21 S 0.381 5.619 22 C -0.158 4.158 23 C -0.152 4.152 24 C -0.092 4.092 25 C -0.159 4.159 26 C -0.085 4.085 27 H 0.148 0.852 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.139 0.861 32 H 0.248 0.752 33 H 0.131 0.869 34 H 0.245 0.755 35 H -0.218 1.218 36 H -0.235 1.235 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.135 0.865 41 H 0.083 0.917 42 H 0.175 0.825 43 H 0.175 0.825 44 H 0.171 0.829 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.413 -4.078 0.572 8.480 hybrid contribution -1.657 0.065 -0.608 1.766 sum 5.756 -4.012 -0.036 7.017 Atomic orbital electron populations 1.23532 0.74486 1.05717 1.02503 1.86540 1.25012 1.32252 1.83862 1.21679 0.89907 0.81363 0.71953 1.90652 1.67566 1.35759 1.47440 1.19095 0.88325 0.95883 1.12211 1.19925 0.94572 0.92640 0.94281 1.22323 1.01289 0.90464 0.98211 0.86372 1.23713 1.02194 0.93799 0.98200 1.22024 0.82685 0.96061 0.96997 0.87375 1.43816 1.10064 1.07483 1.70079 1.23508 0.92909 0.92251 0.97566 1.65954 1.27406 1.12004 1.25159 1.20230 0.96211 0.89298 1.02160 1.24355 0.98148 0.96527 0.95003 1.86471 1.84475 1.33875 1.29617 0.93275 0.75376 0.75792 0.86308 1.25451 0.94227 1.02972 1.14182 1.20242 1.02199 0.87674 1.02016 1.83693 1.09706 1.03165 1.65307 1.23297 1.03941 0.92774 0.95770 1.21323 0.91816 1.00609 1.01423 1.21866 1.01955 0.91856 0.93520 1.21518 0.93858 0.99650 1.00831 1.21638 0.94824 0.97539 0.94454 0.85154 0.91973 0.91985 0.91328 0.86115 0.75245 0.86922 0.75517 1.21818 1.23453 0.89447 0.91744 0.89705 0.86545 0.91666 0.82531 0.82456 0.82932 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.59 9.84 -56.22 -0.55 -2.14 16 3 C 0.50 3.39 7.85 70.33 0.55 3.94 16 4 O -0.52 -5.34 12.90 19.92 0.26 -5.09 16 5 C -0.15 -0.51 5.87 -20.10 -0.12 -0.63 16 6 C -0.01 -0.01 5.31 -19.60 -0.10 -0.11 16 7 C -0.11 -0.08 3.14 -11.01 -0.03 -0.12 16 8 H 0.12 0.76 4.88 -14.01 -0.07 0.69 16 9 C -0.14 0.42 7.23 31.12 0.23 0.65 16 10 C 0.13 -0.23 4.31 45.52 0.20 -0.03 16 11 H 0.11 -0.44 7.06 -2.38 -0.02 -0.46 16 12 N -0.68 -2.32 5.42 -327.89 -1.78 -4.10 16 13 C 0.31 1.94 8.24 179.32 1.48 3.42 16 14 N -0.58 -5.68 8.95 -189.86 -1.70 -7.38 16 15 C 0.05 0.34 5.92 41.41 0.25 0.59 16 16 C -0.03 -0.12 2.82 71.24 0.20 0.08 16 17 O -0.54 -0.44 9.90 -148.98 -1.47 -1.91 16 18 Si 0.79 4.23 32.08 68.60 2.20 6.43 16 19 C -0.25 -0.95 6.50 24.58 0.16 -0.79 16 20 C -0.06 0.02 8.95 71.24 0.64 0.66 16 21 S 0.13 0.29 21.69 -56.49 -1.23 -0.94 16 22 C -0.12 0.18 7.33 31.12 0.23 0.41 16 23 C -0.13 0.59 9.02 22.23 0.20 0.79 16 24 C -0.07 0.43 10.04 22.33 0.22 0.65 16 25 C -0.14 0.59 10.03 22.23 0.22 0.81 16 26 C -0.07 0.02 9.62 22.53 0.22 0.24 16 27 H 0.13 -0.79 8.14 -2.39 -0.02 -0.81 16 28 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 29 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.07 -0.02 8.14 -2.38 -0.02 -0.04 16 31 H 0.12 -0.95 5.97 -2.39 -0.01 -0.97 16 32 H 0.41 2.20 8.83 -92.71 -0.82 1.38 16 33 H 0.11 0.63 7.96 -2.39 -0.02 0.61 16 34 H 0.39 -2.55 8.68 -74.06 -0.64 -3.19 16 35 H -0.29 -2.85 7.11 99.48 0.71 -2.14 16 36 H -0.31 -4.46 7.11 99.48 0.71 -3.75 16 37 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 38 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.08 0.11 6.61 -2.39 -0.02 0.10 16 40 H 0.12 -0.60 7.98 -2.39 -0.02 -0.62 16 41 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.16 -1.48 6.20 -2.91 -0.02 -1.50 16 43 H 0.16 -1.76 8.06 -2.91 -0.02 -1.78 16 44 H 0.15 -1.32 8.06 -2.91 -0.02 -1.35 16 45 H 0.14 -0.31 7.63 -2.91 -0.02 -0.33 16 Total: 0.00 -18.88 382.64 1.03 -17.84 By element: Atomic # 1 Polarization: -14.05 SS G_CDS: -0.42 Total: -14.47 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 5.73 Total: 11.75 kcal Atomic # 7 Polarization: -8.00 SS G_CDS: -3.48 Total: -11.47 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -1.77 Total: -9.14 kcal Atomic # 14 Polarization: 4.23 SS G_CDS: 2.20 Total: 6.43 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -1.23 Total: -0.94 kcal Total: -18.88 1.03 -17.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15105876_15704122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.067 kcal (2) G-P(sol) polarization free energy of solvation -18.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds