Wall clock time and date at job start Mon Mar 8 2021 07:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34710 * 117.00403 * 2 1 4 4 O 1.21466 * 120.00093 * 0.02562 * 3 2 1 5 5 C 1.47725 * 120.00213 * 179.97438 * 3 2 1 6 6 C 1.39609 * 120.15087 * 154.09763 * 5 3 2 7 7 C 1.50700 * 120.07487 * 359.97438 * 6 5 3 8 8 H 1.09003 * 112.84670 * 342.17313 * 7 6 5 9 9 C 1.53775 * 113.61410 * 113.36984 * 7 6 5 10 10 C 1.53783 * 87.07999 * 139.98031 * 9 7 6 11 11 H 1.08999 * 113.61777 * 219.93404 * 10 9 7 12 12 N 1.46503 * 113.61209 * 89.11537 * 10 9 7 13 13 C 1.39147 * 119.99742 * 154.99871 * 12 10 9 14 14 N 1.32340 * 119.72274 * 0.27112 * 13 12 10 15 15 C 1.32003 * 121.64769 * 180.26346 * 14 13 12 16 16 C 1.37983 * 120.89939 * 359.72651 * 15 14 13 17 17 C 1.50706 * 120.32552 * 179.97438 * 16 15 14 18 18 O 1.42893 * 109.47525 * 245.02299 * 17 16 15 19 19 Si 1.86310 * 109.46871 * 5.02586 * 17 16 15 20 20 C 1.38904 * 119.35183 * 359.97438 * 16 15 14 21 21 C 1.38447 * 118.47858 * 359.97438 * 20 16 15 22 22 F 1.35101 * 120.46423 * 179.97438 * 21 20 16 23 23 C 1.53778 * 87.08152 * 334.56867 * 10 9 7 24 24 C 1.37965 * 119.85033 * 179.70615 * 6 5 3 25 25 C 1.38346 * 120.14615 * 0.25635 * 24 6 5 26 26 C 1.38392 * 120.30735 * 0.02562 * 25 24 6 27 27 C 1.37916 * 120.14763 * 0.02562 * 26 25 24 28 28 H 1.08995 * 109.47250 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46777 * 299.99685 * 1 2 3 30 30 H 1.09000 * 109.47196 * 59.99398 * 1 2 3 31 31 H 1.08998 * 113.61753 * 25.43352 * 9 7 6 32 32 H 1.08997 * 113.69361 * 254.53868 * 9 7 6 33 33 H 0.96997 * 120.00314 * 335.00645 * 12 10 9 34 34 H 1.08000 * 119.54934 * 179.70348 * 15 14 13 35 35 H 1.09001 * 109.46724 * 125.01806 * 17 16 15 36 36 H 0.96705 * 113.99787 * 59.99761 * 18 17 16 37 37 H 1.48496 * 110.00220 * 58.67793 * 19 17 16 38 38 H 1.48496 * 109.99617 * 179.97438 * 19 17 16 39 39 H 1.08000 * 120.75879 * 180.02562 * 20 16 15 40 40 H 1.08999 * 113.61677 * 139.98019 * 23 10 9 41 41 H 1.08996 * 113.60980 * 270.88147 * 23 10 9 42 42 H 1.08000 * 119.92669 * 180.27688 * 24 6 5 43 43 H 1.08009 * 119.84602 * 180.02562 * 25 24 6 44 44 H 1.07998 * 119.92531 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.07614 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4022 2.2190 0.0005 5 6 3.5389 1.2775 0.0006 6 6 4.1825 2.3985 -0.5268 7 6 3.3739 3.5340 -1.0992 8 1 2.3474 3.2486 -1.3296 9 6 3.4843 4.8376 -0.2910 10 6 3.5269 5.5771 -1.6387 11 1 4.2343 6.4062 -1.6597 12 7 2.2036 5.9454 -2.1481 13 6 2.0690 7.0188 -3.0233 14 7 3.1407 7.6999 -3.3960 15 6 3.0563 8.7275 -4.2201 16 6 1.8386 9.1280 -4.7309 17 6 1.7571 10.3035 -5.6705 18 8 1.0153 11.3569 -5.0524 19 14 3.4763 10.9033 -6.0653 20 6 0.6887 8.4372 -4.3706 21 6 0.8078 7.3629 -3.5055 22 9 -0.2845 6.6630 -3.1281 23 6 4.0806 4.2770 -2.2453 24 6 5.5605 2.4669 -0.5175 25 6 6.3042 1.4254 0.0079 26 6 5.6729 0.3086 0.5269 27 6 4.2961 0.2268 0.5230 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 4.4082 4.9196 0.2814 32 1 2.5977 5.0617 0.3021 33 1 1.4213 5.4410 -1.8753 34 1 3.9524 9.2623 -4.4982 35 1 1.2583 9.9992 -6.5906 36 1 1.4022 11.6781 -4.2263 37 1 4.2680 9.8074 -6.6796 38 1 3.4096 12.0620 -6.9916 39 1 -0.2760 8.7309 -4.7571 40 1 3.6747 4.0473 -3.2304 41 1 5.1676 4.2058 -2.2071 42 1 6.0595 3.3354 -0.9211 43 1 7.3827 1.4842 0.0130 44 1 6.2596 -0.5010 0.9352 45 1 3.8046 -0.6454 0.9280 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15105876_17656566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:24:00 Heat of formation + Delta-G solvation = -45.851860 kcal Electronic energy + Delta-G solvation = -31412.431301 eV Core-core repulsion = 26891.783944 eV Total energy + Delta-G solvation = -4520.647357 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.137 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -50.00356 -42.07940 -41.46722 -40.62881 -39.20165 -37.88318 -37.57496 -35.48745 -33.25746 -32.62943 -32.20385 -30.85255 -28.77914 -26.90987 -26.72080 -26.09588 -24.98004 -24.76878 -23.10466 -22.75943 -21.86067 -20.25552 -19.51662 -19.05181 -18.51024 -18.26725 -18.11887 -17.59874 -17.52329 -17.08698 -16.98946 -16.50656 -16.12917 -15.94040 -15.86290 -15.59879 -15.40918 -15.37129 -14.91295 -14.74880 -14.53689 -14.33278 -14.20221 -14.05671 -14.01056 -13.57855 -13.44369 -13.23705 -13.18309 -12.90436 -12.58308 -12.44656 -12.27811 -12.14204 -11.96323 -11.86493 -11.41760 -11.19663 -11.03201 -10.74163 -10.68670 -10.41038 -10.05269 -9.75044 -8.80299 -4.96236 -0.31143 -0.10951 0.06985 0.32182 1.32575 1.33915 1.65144 1.68346 1.90604 2.01639 2.50754 2.68388 2.99222 3.22973 3.44329 3.48886 3.55465 3.66009 3.66890 3.70772 3.83608 3.88440 3.96326 3.96704 4.12431 4.17370 4.21920 4.23498 4.37640 4.41335 4.42495 4.46262 4.61338 4.65889 4.69937 4.72536 4.79002 4.83760 4.93749 4.97239 4.99097 5.03266 5.12368 5.20745 5.30377 5.41364 5.46754 5.57134 5.87415 5.98208 6.12828 6.56939 6.79583 6.90004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.503 3.497 4 O -0.522 6.522 5 C -0.151 4.151 6 C -0.020 4.020 7 C -0.088 4.088 8 H 0.093 0.907 9 C -0.122 4.122 10 C 0.138 3.862 11 H 0.115 0.885 12 N -0.700 5.700 13 C 0.385 3.615 14 N -0.520 5.520 15 C 0.152 3.848 16 C -0.207 4.207 17 C -0.061 4.061 18 O -0.556 6.556 19 Si 0.778 3.222 20 C -0.040 4.040 21 C -0.043 4.043 22 F -0.144 7.144 23 C -0.140 4.140 24 C -0.131 4.131 25 C -0.077 4.077 26 C -0.138 4.138 27 C -0.070 4.070 28 H 0.131 0.869 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.113 0.887 32 H 0.064 0.936 33 H 0.411 0.589 34 H 0.189 0.811 35 H 0.110 0.890 36 H 0.396 0.604 37 H -0.279 1.279 38 H -0.297 1.297 39 H 0.153 0.847 40 H 0.058 0.942 41 H 0.116 0.884 42 H 0.156 0.844 43 H 0.158 0.842 44 H 0.154 0.846 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.061 -1.197 2.278 6.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.349 3.651 4 O -0.413 6.413 5 C -0.152 4.152 6 C -0.020 4.020 7 C -0.107 4.107 8 H 0.111 0.889 9 C -0.160 4.160 10 C 0.032 3.968 11 H 0.133 0.867 12 N -0.331 5.331 13 C 0.147 3.853 14 N -0.237 5.237 15 C -0.006 4.006 16 C -0.212 4.212 17 C -0.171 4.171 18 O -0.364 6.364 19 Si 0.684 3.316 20 C -0.066 4.066 21 C -0.069 4.069 22 F -0.124 7.124 23 C -0.178 4.178 24 C -0.149 4.149 25 C -0.095 4.095 26 C -0.155 4.155 27 C -0.088 4.088 28 H 0.149 0.851 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.131 0.869 32 H 0.082 0.918 33 H 0.248 0.752 34 H 0.206 0.794 35 H 0.127 0.873 36 H 0.246 0.754 37 H -0.206 1.206 38 H -0.225 1.225 39 H 0.170 0.830 40 H 0.077 0.923 41 H 0.134 0.866 42 H 0.173 0.827 43 H 0.176 0.824 44 H 0.172 0.828 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.970 -1.212 1.579 7.249 hybrid contribution -2.785 -0.733 -0.342 2.900 sum 4.184 -1.945 1.237 4.777 Atomic orbital electron populations 1.23545 0.74500 1.05756 1.02532 1.86566 1.25037 1.32237 1.83851 1.21638 0.89843 0.81439 0.72141 1.90769 1.67561 1.36382 1.46577 1.19120 0.88399 0.98495 1.09147 1.19898 0.94656 0.92787 0.94673 1.21873 0.99343 0.92187 0.97252 0.88888 1.23314 1.03714 0.93035 0.95905 1.21822 0.84114 0.97166 0.93690 0.86737 1.44380 1.10162 1.30870 1.47723 1.18533 0.87947 0.89013 0.89823 1.67340 1.28776 1.09986 1.17615 1.22752 0.97291 0.90749 0.89779 1.21018 0.93229 1.01980 1.04973 1.25044 1.09644 0.86202 0.96223 1.86481 1.54371 1.51920 1.43670 0.93813 0.73963 0.77705 0.86165 1.21436 1.01141 0.90935 0.93097 1.18202 0.82798 0.99023 1.06900 1.91462 1.52310 1.78035 1.90553 1.23654 1.01934 0.95155 0.97097 1.21292 0.91799 1.00791 1.00985 1.21849 1.01948 0.92239 0.93452 1.21510 0.93751 0.99769 1.00503 1.21591 0.94893 0.96534 0.95792 0.85109 0.91801 0.92085 0.86883 0.91770 0.75180 0.79440 0.87290 0.75387 1.20586 1.22511 0.82959 0.92327 0.86584 0.82687 0.82406 0.82798 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.01 10.56 113.37 1.20 1.21 16 2 O -0.36 -1.99 10.12 -56.20 -0.57 -2.56 16 3 C 0.50 4.03 7.46 70.33 0.52 4.56 16 4 O -0.52 -6.10 13.64 19.94 0.27 -5.83 16 5 C -0.15 -0.72 5.86 -20.10 -0.12 -0.84 16 6 C -0.02 -0.05 5.31 -19.60 -0.10 -0.15 16 7 C -0.09 -0.24 3.00 -11.02 -0.03 -0.28 16 8 H 0.09 0.74 5.49 -2.39 -0.01 0.72 16 9 C -0.12 -0.07 7.32 31.12 0.23 0.16 16 10 C 0.14 0.10 4.35 45.52 0.20 0.30 16 11 H 0.11 0.02 7.41 -2.39 -0.02 0.00 16 12 N -0.70 -2.85 5.41 -321.78 -1.74 -4.59 16 13 C 0.38 2.14 7.49 133.08 1.00 3.14 16 14 N -0.52 -1.90 9.13 -193.03 -1.76 -3.66 16 15 C 0.15 -0.08 9.84 84.61 0.83 0.75 16 16 C -0.21 0.01 5.36 -19.76 -0.11 -0.09 16 17 C -0.06 0.12 2.82 71.24 0.20 0.32 16 18 O -0.56 0.55 12.84 -148.98 -1.91 -1.37 16 19 Si 0.78 -3.41 29.83 68.60 2.05 -1.37 16 20 C -0.04 -0.13 9.82 22.48 0.22 0.09 16 21 C -0.04 -0.27 7.35 22.59 0.17 -0.10 16 22 F -0.14 -1.28 16.65 44.97 0.75 -0.53 16 23 C -0.14 0.01 7.24 31.12 0.23 0.24 16 24 C -0.13 0.34 8.93 22.23 0.20 0.53 16 25 C -0.08 0.34 10.04 22.33 0.22 0.57 16 26 C -0.14 0.43 10.03 22.23 0.22 0.65 16 27 C -0.07 -0.06 9.61 22.54 0.22 0.16 16 28 H 0.13 -0.71 8.14 -2.39 -0.02 -0.73 16 29 H 0.06 0.04 8.14 -2.39 -0.02 0.03 16 30 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.11 -0.31 7.93 -2.39 -0.02 -0.33 16 32 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.41 2.04 8.17 -92.71 -0.76 1.28 16 34 H 0.19 -1.27 4.91 -2.91 -0.01 -1.28 16 35 H 0.11 -0.11 7.96 -2.39 -0.02 -0.13 16 36 H 0.40 -3.57 8.70 -74.05 -0.64 -4.22 16 37 H -0.28 -0.01 7.11 99.48 0.71 0.70 16 38 H -0.30 -1.02 7.11 99.48 0.71 -0.31 16 39 H 0.15 0.26 8.06 -2.91 -0.02 0.23 16 40 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.12 -0.51 6.02 -2.39 -0.01 -0.52 16 42 H 0.16 -1.12 6.29 -2.91 -0.02 -1.14 16 43 H 0.16 -1.57 8.06 -2.91 -0.02 -1.59 16 44 H 0.15 -1.21 8.06 -2.91 -0.02 -1.24 16 45 H 0.14 -0.19 7.86 -2.91 -0.02 -0.21 16 Total: 0.00 -19.06 379.83 2.08 -16.99 By element: Atomic # 1 Polarization: -8.00 SS G_CDS: -0.29 Total: -8.30 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 5.29 Total: 11.21 kcal Atomic # 7 Polarization: -4.74 SS G_CDS: -3.50 Total: -8.25 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -2.21 Total: -9.76 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.75 Total: -0.53 kcal Atomic # 14 Polarization: -3.41 SS G_CDS: 2.05 Total: -1.37 kcal Total: -19.06 2.08 -16.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15105876_17656566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.865 kcal (2) G-P(sol) polarization free energy of solvation -19.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds