Wall clock time and date at job start Mon Mar 8 2021 08:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86296 * 109.47101 * 2 1 4 4 C 1.50695 * 109.47167 * 240.00006 * 2 1 3 5 5 C 1.38606 * 120.72046 * 299.99886 * 4 2 1 6 6 N 1.32275 * 119.19756 * 179.97438 * 5 4 2 7 7 C 1.32491 * 120.73974 * 0.02562 * 6 5 4 8 8 N 1.38414 * 119.21785 * 179.97438 * 7 6 5 9 9 C 1.46497 * 120.00057 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47053 * 184.96664 * 9 8 7 11 11 C 1.53001 * 112.85404 * 65.72649 * 10 9 8 12 12 O 1.42895 * 109.46678 * 57.58137 * 11 10 9 13 13 C 1.53782 * 113.61419 * 197.03606 * 10 9 8 14 14 C 1.53787 * 87.08306 * 139.97798 * 13 10 9 15 15 H 1.08997 * 113.69029 * 89.12405 * 14 13 10 16 16 O 1.42895 * 113.61431 * 220.01998 * 14 13 10 17 17 C 1.42911 * 113.99873 * 247.49889 * 16 14 13 18 18 C 1.50696 * 109.46809 * 180.02562 * 17 16 14 19 19 C 1.38231 * 119.99884 * 269.71976 * 18 17 16 20 20 C 1.38239 * 119.99982 * 179.79344 * 19 18 17 21 21 C 1.38233 * 119.99896 * 0.46250 * 20 19 18 22 22 C 1.38229 * 119.99897 * 359.77207 * 21 20 19 23 23 C 1.38232 * 120.00170 * 0.02562 * 22 21 20 24 24 C 1.53778 * 87.08121 * 334.56579 * 14 13 10 25 25 N 1.32493 * 121.57020 * 0.27704 * 7 6 5 26 26 C 1.32285 * 120.73458 * 359.43789 * 25 7 6 27 27 H 0.96707 * 114.00234 * 60.00018 * 1 2 3 28 28 H 1.09002 * 109.46628 * 119.99908 * 2 1 3 29 29 H 1.48500 * 110.00033 * 59.99518 * 3 2 1 30 30 H 1.48502 * 110.00082 * 181.31772 * 3 2 1 31 31 H 1.08003 * 120.40004 * 0.02562 * 5 4 2 32 32 H 0.97002 * 119.99721 * 0.02562 * 8 7 6 33 33 H 1.09000 * 109.47273 * 64.96470 * 9 8 7 34 34 H 1.08997 * 109.47226 * 304.96649 * 9 8 7 35 35 H 1.08998 * 109.47293 * 177.58377 * 11 10 9 36 36 H 1.08997 * 109.46722 * 297.58905 * 11 10 9 37 37 H 0.96710 * 113.99487 * 179.97438 * 12 11 10 38 38 H 1.08997 * 113.61657 * 254.52398 * 13 10 9 39 39 H 1.08999 * 113.61702 * 25.42883 * 13 10 9 40 40 H 1.09004 * 109.46405 * 299.99833 * 17 16 14 41 41 H 1.08994 * 109.47306 * 59.99939 * 17 16 14 42 42 H 1.08005 * 120.00157 * 0.02562 * 19 18 17 43 43 H 1.08002 * 119.99698 * 180.25477 * 20 19 18 44 44 H 1.07998 * 119.99530 * 179.79061 * 21 20 19 45 45 H 1.08000 * 120.00194 * 179.97438 * 22 21 20 46 46 H 1.08002 * 119.99694 * 179.97438 * 23 22 21 47 47 H 1.08997 * 113.61890 * 270.88301 * 24 14 13 48 48 H 1.08995 * 113.61740 * 139.97770 * 24 14 13 49 49 H 1.08000 * 120.40113 * 180.29804 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.6057 -2.0371 -1.4646 6 7 2.0626 -2.6310 -2.5546 7 6 2.8232 -1.9722 -3.4165 8 7 3.2846 -2.6247 -4.5466 9 6 4.1273 -1.9129 -5.5107 10 6 4.3946 -2.8144 -6.7176 11 6 3.1295 -3.1221 -7.5212 12 8 2.5333 -1.8989 -7.9576 13 6 5.5786 -2.3507 -7.5826 14 6 5.9603 -3.8345 -7.7162 15 1 5.4886 -4.3335 -8.5627 16 8 7.3676 -4.0720 -7.6458 17 6 7.9419 -4.5297 -8.8718 18 6 9.4211 -4.7471 -8.6832 19 6 10.3080 -3.7154 -8.9278 20 6 11.6646 -3.9136 -8.7507 21 6 12.1350 -5.1462 -8.3382 22 6 11.2485 -6.1793 -8.0983 23 6 9.8916 -5.9799 -8.2714 24 6 5.2298 -4.0614 -6.3821 25 7 3.1577 -0.7055 -3.2194 26 6 2.7294 -0.0513 -2.1523 27 1 -0.3934 0.4417 -0.7651 28 1 1.7922 -0.5138 0.8900 29 1 1.5614 2.4679 1.2084 30 1 3.5346 1.7703 -0.0321 31 1 0.9856 -2.5792 -0.7659 32 1 3.0500 -3.5533 -4.7003 33 1 5.0734 -1.6468 -5.0393 34 1 3.6178 -1.0072 -5.8394 35 1 3.3886 -3.7296 -8.3883 36 1 2.4240 -3.6665 -6.8937 37 1 1.7249 -2.0181 -8.4748 38 1 5.2779 -1.8908 -8.5239 39 1 6.3128 -1.7585 -7.0365 40 1 7.4715 -5.4682 -9.1652 41 1 7.7802 -3.7835 -9.6496 42 1 9.9408 -2.7534 -9.2537 43 1 12.3572 -3.1063 -8.9379 44 1 13.1951 -5.3020 -8.2032 45 1 11.6159 -7.1425 -7.7764 46 1 9.1990 -6.7872 -8.0843 47 1 5.8686 -3.9368 -5.5078 48 1 4.6475 -4.9823 -6.3543 49 1 3.0014 0.9826 -1.9994 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15111638_12175864.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:28:05 Heat of formation + Delta-G solvation = -6.635758 kcal Electronic energy + Delta-G solvation = -30734.492291 eV Core-core repulsion = 26436.724438 eV Total energy + Delta-G solvation = -4297.767852 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.04252 -41.33723 -40.17704 -38.35403 -37.99351 -36.89320 -36.09816 -34.61809 -32.90721 -32.38012 -31.81242 -29.38708 -27.56694 -27.09689 -26.75694 -26.07313 -25.53694 -23.50011 -23.25574 -22.72141 -22.27724 -19.87139 -19.22221 -18.73730 -18.40953 -18.11212 -17.93284 -17.64308 -16.75464 -16.64335 -16.55881 -16.22687 -16.08880 -16.00800 -15.77046 -15.54236 -15.44811 -15.12235 -14.94860 -14.51448 -14.31106 -14.19259 -14.02189 -13.99312 -13.88335 -13.44198 -13.39860 -13.13653 -12.90826 -12.73261 -12.28664 -12.16094 -11.97567 -11.81226 -11.77808 -11.73930 -11.68833 -11.50658 -11.23975 -10.98069 -10.53645 -10.46802 -9.94267 -9.82648 -9.76380 -9.00993 -5.07584 0.14273 0.24279 0.33605 0.49672 1.26270 1.58940 1.85793 1.95020 2.54316 2.88241 2.91893 3.07629 3.22129 3.32974 3.43806 3.46496 3.59192 3.68078 3.76746 3.77190 3.86390 3.88831 3.90024 3.97206 4.03719 4.09825 4.22458 4.27919 4.28709 4.33703 4.38104 4.39534 4.53031 4.60048 4.61715 4.70928 4.72690 4.73762 4.79908 4.89973 4.92790 5.04361 5.11643 5.11865 5.13702 5.28879 5.53440 5.61008 5.64704 5.83554 6.06224 6.07553 6.21239 6.46671 6.54395 6.54879 7.37423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.045 4.045 3 Si 0.681 3.319 4 C -0.297 4.297 5 C 0.223 3.777 6 N -0.571 5.571 7 C 0.568 3.432 8 N -0.692 5.692 9 C 0.160 3.840 10 C -0.096 4.096 11 C 0.099 3.901 12 O -0.565 6.565 13 C -0.132 4.132 14 C 0.063 3.937 15 H 0.089 0.911 16 O -0.364 6.364 17 C 0.102 3.898 18 C -0.094 4.094 19 C -0.099 4.099 20 C -0.123 4.123 21 C -0.113 4.113 22 C -0.123 4.123 23 C -0.099 4.099 24 C -0.124 4.124 25 N -0.560 5.560 26 C 0.199 3.801 27 H 0.379 0.621 28 H 0.115 0.885 29 H -0.251 1.251 30 H -0.255 1.255 31 H 0.170 0.830 32 H 0.412 0.588 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.383 0.617 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.122 0.878 47 H 0.101 0.899 48 H 0.076 0.924 49 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.059 -0.304 -4.146 4.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.346 6.346 2 C -0.158 4.158 3 Si 0.583 3.417 4 C -0.305 4.305 5 C 0.054 3.946 6 N -0.293 5.293 7 C 0.212 3.788 8 N -0.328 5.328 9 C 0.036 3.964 10 C -0.097 4.097 11 C 0.021 3.979 12 O -0.371 6.371 13 C -0.170 4.170 14 C 0.005 3.995 15 H 0.107 0.893 16 O -0.283 6.283 17 C 0.026 3.974 18 C -0.094 4.094 19 C -0.117 4.117 20 C -0.141 4.141 21 C -0.131 4.131 22 C -0.141 4.141 23 C -0.117 4.117 24 C -0.162 4.162 25 N -0.283 5.283 26 C 0.031 3.969 27 H 0.226 0.774 28 H 0.132 0.868 29 H -0.176 1.176 30 H -0.180 1.180 31 H 0.187 0.813 32 H 0.249 0.751 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.230 0.770 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.140 0.860 47 H 0.119 0.881 48 H 0.095 0.905 49 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.621 -0.127 -3.689 3.743 hybrid contribution -0.867 -0.913 0.344 1.305 sum -0.246 -1.040 -3.345 3.512 Atomic orbital electron populations 1.86502 1.17196 1.81639 1.49297 1.24685 0.85055 1.09581 0.96441 0.94932 0.81054 0.77898 0.87800 1.21689 1.08262 0.98524 1.02072 1.22807 0.90301 0.90571 0.90872 1.67979 1.16253 1.39303 1.05725 1.19366 0.86840 0.85622 0.86991 1.44091 1.54230 1.14484 1.19946 1.21174 0.94423 0.94780 0.86028 1.21852 0.94090 0.97657 0.96077 1.21858 0.92992 0.86354 0.96661 1.86471 1.44901 1.30584 1.75121 1.23453 0.95943 0.97120 1.00513 1.23701 0.81679 0.96035 0.98134 0.89350 1.88057 1.20868 1.86466 1.32940 1.21375 0.90138 0.98782 0.87121 1.19580 0.93997 0.94311 1.01478 1.21083 0.93222 0.98344 0.99023 1.21196 0.95523 0.97527 0.99862 1.21254 0.99946 0.93311 0.98632 1.21188 0.93286 0.99354 1.00308 1.21072 0.95752 0.96768 0.98141 1.23318 0.97199 0.96982 0.98685 1.67938 1.28142 1.08525 1.23678 1.22783 0.88518 0.98766 0.86793 0.77366 0.86754 1.17557 1.18017 0.81329 0.75080 0.91390 0.89867 0.93164 0.93239 0.76999 0.90215 0.88503 0.92365 0.92262 0.85907 0.85769 0.85862 0.85796 0.85976 0.88092 0.90505 0.81793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.22 12.79 -35.23 -0.45 -0.23 16 2 C -0.05 0.03 2.85 36.00 0.10 0.14 16 3 Si 0.68 -1.00 29.87 -169.99 -5.08 -6.08 16 4 C -0.30 -0.14 5.40 -104.35 -0.56 -0.70 16 5 C 0.22 0.34 10.92 -17.22 -0.19 0.16 16 6 N -0.57 -1.86 10.46 -13.93 -0.15 -2.00 16 7 C 0.57 1.83 8.43 -322.80 -2.72 -0.89 16 8 N -0.69 -0.78 5.43 -62.31 -0.34 -1.12 16 9 C 0.16 0.09 4.86 -4.05 -0.02 0.07 16 10 C -0.10 0.12 0.65 -153.69 -0.10 0.02 16 11 C 0.10 -0.19 6.17 37.16 0.23 0.03 16 12 O -0.57 0.42 13.06 -35.23 -0.46 -0.04 16 13 C -0.13 0.09 7.06 -25.92 -0.18 -0.09 16 14 C 0.06 -0.05 3.96 -25.92 -0.10 -0.16 16 15 H 0.09 -0.20 7.33 -51.93 -0.38 -0.58 16 16 O -0.36 -0.54 10.34 -35.23 -0.36 -0.90 16 17 C 0.10 0.02 5.90 36.00 0.21 0.23 16 18 C -0.09 -0.14 5.51 -104.63 -0.58 -0.72 16 19 C -0.10 -0.13 9.70 -39.58 -0.38 -0.52 16 20 C -0.12 -0.13 10.05 -39.58 -0.40 -0.52 16 21 C -0.11 -0.11 10.05 -39.59 -0.40 -0.50 16 22 C -0.12 -0.12 10.05 -39.59 -0.40 -0.52 16 23 C -0.10 -0.13 9.70 -39.59 -0.38 -0.51 16 24 C -0.12 0.16 6.77 -25.91 -0.18 -0.01 16 25 N -0.56 -1.77 9.58 -13.93 -0.13 -1.91 16 26 C 0.20 0.21 9.92 -17.22 -0.17 0.04 16 27 H 0.38 -1.51 8.70 45.56 0.40 -1.11 16 28 H 0.12 -0.06 7.96 -51.93 -0.41 -0.48 16 29 H -0.25 -0.44 7.11 56.52 0.40 -0.04 16 30 H -0.26 -0.22 7.11 56.52 0.40 0.18 16 31 H 0.17 -0.04 8.06 -52.48 -0.42 -0.46 16 32 H 0.41 -0.01 7.99 -40.82 -0.33 -0.34 16 33 H 0.07 0.09 8.06 -51.93 -0.42 -0.33 16 34 H 0.08 0.19 7.69 -51.93 -0.40 -0.21 16 35 H 0.05 -0.15 7.31 -51.93 -0.38 -0.53 16 36 H 0.05 -0.12 7.68 -51.93 -0.40 -0.52 16 37 H 0.38 -1.70 9.12 45.56 0.42 -1.28 16 38 H 0.08 -0.05 8.10 -51.93 -0.42 -0.47 16 39 H 0.10 0.01 8.04 -51.93 -0.42 -0.40 16 40 H 0.06 -0.06 8.09 -51.93 -0.42 -0.48 16 41 H 0.06 -0.05 8.08 -51.93 -0.42 -0.47 16 42 H 0.12 -0.01 8.06 -52.48 -0.42 -0.43 16 43 H 0.12 -0.10 8.06 -52.49 -0.42 -0.52 16 44 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 45 H 0.12 -0.10 8.06 -52.49 -0.42 -0.52 16 46 H 0.12 -0.02 8.06 -52.49 -0.42 -0.44 16 47 H 0.10 0.00 8.10 -51.93 -0.42 -0.42 16 48 H 0.08 -0.18 8.10 -51.93 -0.42 -0.60 16 49 H 0.17 -0.24 5.04 -52.49 -0.26 -0.50 16 LS Contribution 407.41 15.07 6.14 6.14 Total: 0.00 -8.63 407.41 -13.47 -22.10 By element: Atomic # 1 Polarization: -5.07 SS G_CDS: -6.42 Total: -11.49 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -6.22 Total: -4.47 kcal Atomic # 7 Polarization: -4.41 SS G_CDS: -0.62 Total: -5.03 kcal Atomic # 8 Polarization: 0.10 SS G_CDS: -1.27 Total: -1.17 kcal Atomic # 14 Polarization: -1.00 SS G_CDS: -5.08 Total: -6.08 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -8.63 -13.47 -22.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15111638_12175864.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.467 kcal (2) G-P(sol) polarization free energy of solvation -8.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds