Wall clock time and date at job start Mon Mar 8 2021 08:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86296 * 109.47101 * 2 1 4 4 C 1.50695 * 109.47167 * 240.00006 * 2 1 3 5 5 C 1.38606 * 120.72046 * 299.99886 * 4 2 1 6 6 N 1.32275 * 119.19756 * 179.97438 * 5 4 2 7 7 C 1.32491 * 120.73974 * 0.02562 * 6 5 4 8 8 N 1.38414 * 119.21785 * 179.97438 * 7 6 5 9 9 C 1.46497 * 120.00057 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47053 * 184.96664 * 9 8 7 11 11 C 1.53001 * 112.85404 * 65.72649 * 10 9 8 12 12 O 1.42895 * 109.46678 * 57.58137 * 11 10 9 13 13 C 1.53782 * 113.61419 * 197.03606 * 10 9 8 14 14 C 1.53787 * 87.08306 * 139.97798 * 13 10 9 15 15 H 1.08997 * 113.69029 * 89.12405 * 14 13 10 16 16 O 1.42895 * 113.61431 * 220.01998 * 14 13 10 17 17 C 1.42911 * 113.99873 * 247.49889 * 16 14 13 18 18 C 1.50696 * 109.46809 * 180.02562 * 17 16 14 19 19 C 1.38231 * 119.99884 * 269.71976 * 18 17 16 20 20 C 1.38239 * 119.99982 * 179.79344 * 19 18 17 21 21 C 1.38233 * 119.99896 * 0.46250 * 20 19 18 22 22 C 1.38229 * 119.99897 * 359.77207 * 21 20 19 23 23 C 1.38232 * 120.00170 * 0.02562 * 22 21 20 24 24 C 1.53778 * 87.08121 * 334.56579 * 14 13 10 25 25 N 1.32493 * 121.57020 * 0.27704 * 7 6 5 26 26 C 1.32285 * 120.73458 * 359.43789 * 25 7 6 27 27 H 0.96707 * 114.00234 * 60.00018 * 1 2 3 28 28 H 1.09002 * 109.46628 * 119.99908 * 2 1 3 29 29 H 1.48500 * 110.00033 * 59.99518 * 3 2 1 30 30 H 1.48502 * 110.00082 * 181.31772 * 3 2 1 31 31 H 1.08003 * 120.40004 * 0.02562 * 5 4 2 32 32 H 0.97002 * 119.99721 * 0.02562 * 8 7 6 33 33 H 1.09000 * 109.47273 * 64.96470 * 9 8 7 34 34 H 1.08997 * 109.47226 * 304.96649 * 9 8 7 35 35 H 1.08998 * 109.47293 * 177.58377 * 11 10 9 36 36 H 1.08997 * 109.46722 * 297.58905 * 11 10 9 37 37 H 0.96710 * 113.99487 * 179.97438 * 12 11 10 38 38 H 1.08997 * 113.61657 * 254.52398 * 13 10 9 39 39 H 1.08999 * 113.61702 * 25.42883 * 13 10 9 40 40 H 1.09004 * 109.46405 * 299.99833 * 17 16 14 41 41 H 1.08994 * 109.47306 * 59.99939 * 17 16 14 42 42 H 1.08005 * 120.00157 * 0.02562 * 19 18 17 43 43 H 1.08002 * 119.99698 * 180.25477 * 20 19 18 44 44 H 1.07998 * 119.99530 * 179.79061 * 21 20 19 45 45 H 1.08000 * 120.00194 * 179.97438 * 22 21 20 46 46 H 1.08002 * 119.99694 * 179.97438 * 23 22 21 47 47 H 1.08997 * 113.61890 * 270.88301 * 24 14 13 48 48 H 1.08995 * 113.61740 * 139.97770 * 24 14 13 49 49 H 1.08000 * 120.40113 * 180.29804 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.6057 -2.0371 -1.4646 6 7 2.0626 -2.6310 -2.5546 7 6 2.8232 -1.9722 -3.4165 8 7 3.2846 -2.6247 -4.5466 9 6 4.1273 -1.9129 -5.5107 10 6 4.3946 -2.8144 -6.7176 11 6 3.1295 -3.1221 -7.5212 12 8 2.5333 -1.8989 -7.9576 13 6 5.5786 -2.3507 -7.5826 14 6 5.9603 -3.8345 -7.7162 15 1 5.4886 -4.3335 -8.5627 16 8 7.3676 -4.0720 -7.6458 17 6 7.9419 -4.5297 -8.8718 18 6 9.4211 -4.7471 -8.6832 19 6 10.3080 -3.7154 -8.9278 20 6 11.6646 -3.9136 -8.7507 21 6 12.1350 -5.1462 -8.3382 22 6 11.2485 -6.1793 -8.0983 23 6 9.8916 -5.9799 -8.2714 24 6 5.2298 -4.0614 -6.3821 25 7 3.1577 -0.7055 -3.2194 26 6 2.7294 -0.0513 -2.1523 27 1 -0.3934 0.4417 -0.7651 28 1 1.7922 -0.5138 0.8900 29 1 1.5614 2.4679 1.2084 30 1 3.5346 1.7703 -0.0321 31 1 0.9856 -2.5792 -0.7659 32 1 3.0500 -3.5533 -4.7003 33 1 5.0734 -1.6468 -5.0393 34 1 3.6178 -1.0072 -5.8394 35 1 3.3886 -3.7296 -8.3883 36 1 2.4240 -3.6665 -6.8937 37 1 1.7249 -2.0181 -8.4748 38 1 5.2779 -1.8908 -8.5239 39 1 6.3128 -1.7585 -7.0365 40 1 7.4715 -5.4682 -9.1652 41 1 7.7802 -3.7835 -9.6496 42 1 9.9408 -2.7534 -9.2537 43 1 12.3572 -3.1063 -8.9379 44 1 13.1951 -5.3020 -8.2032 45 1 11.6159 -7.1425 -7.7764 46 1 9.1990 -6.7872 -8.0843 47 1 5.8686 -3.9368 -5.5078 48 1 4.6475 -4.9823 -6.3543 49 1 3.0014 0.9826 -1.9994 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15111638_12175864.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:28:04 Heat of formation + Delta-G solvation = -5.536965 kcal Electronic energy + Delta-G solvation = -30734.444643 eV Core-core repulsion = 26436.724438 eV Total energy + Delta-G solvation = -4297.720205 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.13818 -41.29395 -40.18301 -38.35044 -37.95820 -36.82167 -36.11992 -34.75086 -32.92842 -32.42984 -31.83544 -29.37302 -27.52151 -27.05727 -26.71571 -26.10695 -25.60043 -23.52646 -23.28394 -22.73815 -22.29223 -19.88536 -19.21507 -18.76732 -18.35306 -18.07312 -17.92874 -17.63536 -16.74878 -16.65772 -16.57001 -16.20980 -16.09411 -16.01441 -15.75005 -15.54200 -15.45580 -15.11797 -14.97392 -14.57519 -14.31200 -14.22260 -14.05856 -13.96673 -13.87050 -13.40004 -13.39433 -13.16057 -12.85031 -12.70765 -12.23874 -12.21703 -11.97028 -11.93176 -11.79800 -11.76292 -11.64798 -11.44000 -11.30142 -10.83424 -10.54620 -10.43430 -10.05074 -9.87135 -9.80315 -9.10471 -4.99350 0.04091 0.13326 0.29694 0.45111 1.32205 1.63378 1.78737 1.97747 2.55314 2.79176 3.00873 3.08340 3.17789 3.38887 3.53788 3.55455 3.66085 3.67316 3.71767 3.81072 3.86156 3.89353 3.94245 4.07034 4.10888 4.15735 4.24832 4.25586 4.32451 4.41065 4.51902 4.54324 4.55932 4.60116 4.66378 4.72040 4.73074 4.73743 4.77383 4.86994 4.98968 5.03967 5.10740 5.14192 5.19211 5.23965 5.50631 5.57504 5.61201 5.72440 6.01223 6.05000 6.27039 6.37939 6.78334 6.87024 7.25833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.045 4.045 3 Si 0.766 3.234 4 C -0.288 4.288 5 C 0.213 3.787 6 N -0.588 5.588 7 C 0.552 3.448 8 N -0.685 5.685 9 C 0.169 3.831 10 C -0.088 4.088 11 C 0.100 3.900 12 O -0.586 6.586 13 C -0.133 4.133 14 C 0.064 3.936 15 H 0.109 0.891 16 O -0.386 6.386 17 C 0.102 3.898 18 C -0.108 4.108 19 C -0.113 4.113 20 C -0.134 4.134 21 C -0.125 4.125 22 C -0.134 4.134 23 C -0.113 4.113 24 C -0.120 4.120 25 N -0.581 5.581 26 C 0.192 3.808 27 H 0.395 0.605 28 H 0.114 0.886 29 H -0.294 1.294 30 H -0.285 1.285 31 H 0.184 0.816 32 H 0.417 0.583 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.397 0.603 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.133 0.867 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.675 -0.738 -4.606 4.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.157 4.157 3 Si 0.672 3.328 4 C -0.296 4.296 5 C 0.045 3.955 6 N -0.310 5.310 7 C 0.195 3.805 8 N -0.322 5.322 9 C 0.045 3.955 10 C -0.088 4.088 11 C 0.022 3.978 12 O -0.394 6.394 13 C -0.171 4.171 14 C 0.006 3.994 15 H 0.126 0.874 16 O -0.306 6.306 17 C 0.026 3.974 18 C -0.108 4.108 19 C -0.132 4.132 20 C -0.152 4.152 21 C -0.143 4.143 22 C -0.152 4.152 23 C -0.131 4.131 24 C -0.157 4.157 25 N -0.304 5.304 26 C 0.025 3.975 27 H 0.245 0.755 28 H 0.132 0.868 29 H -0.221 1.221 30 H -0.212 1.212 31 H 0.201 0.799 32 H 0.255 0.745 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.247 0.753 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.149 0.851 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.157 0.843 46 H 0.151 0.849 47 H 0.103 0.897 48 H 0.111 0.889 49 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.024 -0.575 -4.177 4.216 hybrid contribution -0.684 -0.734 0.551 1.144 sum -0.708 -1.309 -3.626 3.920 Atomic orbital electron populations 1.86472 1.17117 1.82058 1.50464 1.24772 0.85170 1.10000 0.95764 0.93917 0.77914 0.75468 0.85513 1.21764 1.07578 0.98141 1.02132 1.23147 0.90357 0.91220 0.90735 1.68001 1.16846 1.39803 1.06391 1.19625 0.87322 0.85963 0.87598 1.44090 1.53958 1.14628 1.19512 1.21022 0.93338 0.94638 0.86470 1.21796 0.94558 0.97225 0.95270 1.21900 0.92449 0.86185 0.97223 1.86434 1.45969 1.31433 1.75597 1.23415 0.95897 0.97383 1.00402 1.23822 0.80889 0.95741 0.98906 0.87377 1.88029 1.22091 1.86665 1.33777 1.21445 0.89436 0.99667 0.86878 1.19846 0.94915 0.94494 1.01516 1.21314 0.93600 0.98857 0.99381 1.21466 0.95810 0.98153 0.99773 1.21535 1.00892 0.93329 0.98541 1.21467 0.93379 1.00143 1.00198 1.21312 0.96261 0.97172 0.98317 1.23247 0.96979 0.97552 0.97954 1.67969 1.28928 1.08799 1.24721 1.23173 0.88272 0.99632 0.86376 0.75535 0.86837 1.22124 1.21170 0.79913 0.74509 0.92728 0.91633 0.91469 0.92672 0.75289 0.90161 0.89887 0.91048 0.91438 0.85120 0.84406 0.84346 0.84345 0.84937 0.89710 0.88878 0.79807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.89 12.79 -148.98 -1.90 -1.02 16 2 C -0.05 0.09 2.85 71.23 0.20 0.29 16 3 Si 0.77 -2.40 29.87 68.60 2.05 -0.35 16 4 C -0.29 -0.23 5.40 -19.69 -0.11 -0.34 16 5 C 0.21 0.68 10.92 84.71 0.93 1.61 16 6 N -0.59 -4.15 10.46 -197.98 -2.07 -6.22 16 7 C 0.55 4.05 8.43 261.48 2.20 6.25 16 8 N -0.69 -2.18 5.43 -351.05 -1.91 -4.09 16 9 C 0.17 0.41 4.86 86.38 0.42 0.83 16 10 C -0.09 0.18 0.65 -51.65 -0.03 0.15 16 11 C 0.10 -0.45 6.17 71.98 0.44 -0.01 16 12 O -0.59 0.98 13.06 -148.98 -1.94 -0.96 16 13 C -0.13 0.10 7.06 31.12 0.22 0.32 16 14 C 0.06 -0.12 3.96 31.12 0.12 0.00 16 15 H 0.11 -0.65 7.33 -2.39 -0.02 -0.67 16 16 O -0.39 -1.26 10.34 -148.98 -1.54 -2.80 16 17 C 0.10 0.03 5.90 71.23 0.42 0.45 16 18 C -0.11 -0.38 5.51 -19.87 -0.11 -0.49 16 19 C -0.11 -0.38 9.70 22.27 0.22 -0.16 16 20 C -0.13 -0.33 10.05 22.27 0.22 -0.11 16 21 C -0.13 -0.26 10.05 22.27 0.22 -0.04 16 22 C -0.13 -0.30 10.05 22.27 0.22 -0.08 16 23 C -0.11 -0.33 9.70 22.27 0.22 -0.12 16 24 C -0.12 0.30 6.77 31.12 0.21 0.51 16 25 N -0.58 -4.19 9.58 -197.98 -1.90 -6.08 16 26 C 0.19 0.44 9.92 84.71 0.84 1.28 16 27 H 0.39 -3.56 8.70 -74.05 -0.64 -4.20 16 28 H 0.11 -0.18 7.96 -2.39 -0.02 -0.20 16 29 H -0.29 -1.23 7.11 99.48 0.71 -0.52 16 30 H -0.28 -0.53 7.11 99.48 0.71 0.18 16 31 H 0.18 -0.12 8.06 -2.91 -0.02 -0.15 16 32 H 0.42 0.20 7.99 -92.71 -0.74 -0.54 16 33 H 0.05 0.27 8.06 -2.39 -0.02 0.25 16 34 H 0.07 0.41 7.69 -2.39 -0.02 0.39 16 35 H 0.07 -0.52 7.31 -2.39 -0.02 -0.54 16 36 H 0.06 -0.31 7.68 -2.39 -0.02 -0.32 16 37 H 0.40 -3.70 9.12 -74.05 -0.68 -4.37 16 38 H 0.08 -0.07 8.10 -2.39 -0.02 -0.09 16 39 H 0.08 0.16 8.04 -2.39 -0.02 0.14 16 40 H 0.07 -0.20 8.09 -2.39 -0.02 -0.22 16 41 H 0.07 -0.13 8.08 -2.39 -0.02 -0.15 16 42 H 0.13 0.08 8.06 -2.91 -0.02 0.06 16 43 H 0.14 -0.18 8.06 -2.91 -0.02 -0.21 16 44 H 0.14 -0.27 8.06 -2.91 -0.02 -0.29 16 45 H 0.14 -0.23 8.06 -2.91 -0.02 -0.26 16 46 H 0.13 -0.02 8.06 -2.91 -0.02 -0.05 16 47 H 0.08 0.09 8.10 -2.39 -0.02 0.07 16 48 H 0.09 -0.53 8.10 -2.39 -0.02 -0.55 16 49 H 0.19 -0.58 5.04 -2.91 -0.01 -0.59 16 Total: 0.00 -20.62 407.41 -3.38 -24.00 By element: Atomic # 1 Polarization: -11.80 SS G_CDS: -1.03 Total: -12.83 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 6.86 Total: 10.35 kcal Atomic # 7 Polarization: -10.52 SS G_CDS: -5.87 Total: -16.39 kcal Atomic # 8 Polarization: 0.61 SS G_CDS: -5.39 Total: -4.78 kcal Atomic # 14 Polarization: -2.40 SS G_CDS: 2.05 Total: -0.35 kcal Total: -20.62 -3.38 -24.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15111638_12175864.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.459 kcal (2) G-P(sol) polarization free energy of solvation -20.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds