Wall clock time and date at job start Mon Mar 8 2021 08:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86300 * 109.46884 * 2 1 4 4 C 1.50700 * 109.46915 * 119.99504 * 2 1 3 5 5 C 1.38026 * 120.33541 * 245.02869 * 4 2 1 6 6 N 1.31977 * 120.85551 * 179.97438 * 5 4 2 7 7 C 1.32398 * 121.62142 * 359.97438 * 6 5 4 8 8 N 1.39003 * 119.70289 * 180.02562 * 7 6 5 9 9 C 1.46495 * 120.00119 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47332 * 175.69248 * 9 8 7 11 11 C 1.53007 * 112.84886 * 65.43938 * 10 9 8 12 12 O 1.42898 * 109.47176 * 56.46523 * 11 10 9 13 13 C 1.53783 * 113.61703 * 196.63205 * 10 9 8 14 14 C 1.53948 * 87.01919 * 139.95328 * 13 10 9 15 15 H 1.09003 * 113.54019 * 89.19275 * 14 13 10 16 16 O 1.42908 * 113.74350 * 220.05942 * 14 13 10 17 17 C 1.42902 * 113.99445 * 247.59804 * 16 14 13 18 18 C 1.50710 * 109.46695 * 179.97438 * 17 16 14 19 19 C 1.38234 * 119.99774 * 269.72707 * 18 17 16 20 20 C 1.38240 * 119.99578 * 179.76491 * 19 18 17 21 21 C 1.38234 * 120.00135 * 0.48263 * 20 19 18 22 22 C 1.38238 * 119.99747 * 359.79394 * 21 20 19 23 23 C 1.38231 * 120.00455 * 359.95487 * 22 21 20 24 24 C 1.53782 * 113.61415 * 294.24013 * 10 9 8 25 25 C 1.39129 * 120.59108 * 0.02562 * 7 6 5 26 26 C 1.38302 * 119.09878 * 359.97438 * 25 7 6 27 27 H 0.96701 * 114.00859 * 300.00476 * 1 2 3 28 28 H 1.08993 * 109.47555 * 239.99875 * 2 1 3 29 29 H 1.48500 * 109.99978 * 299.99386 * 3 2 1 30 30 H 1.48500 * 110.00446 * 61.31259 * 3 2 1 31 31 H 1.08000 * 119.57132 * 359.97438 * 5 4 2 32 32 H 0.97006 * 119.99931 * 359.97438 * 8 7 6 33 33 H 1.08994 * 109.47072 * 295.69417 * 9 8 7 34 34 H 1.09002 * 109.47211 * 55.69017 * 9 8 7 35 35 H 1.09003 * 109.47178 * 176.46748 * 11 10 9 36 36 H 1.09005 * 109.46791 * 296.46243 * 11 10 9 37 37 H 0.96695 * 113.99687 * 180.02562 * 12 11 10 38 38 H 1.09002 * 113.61610 * 254.53425 * 13 10 9 39 39 H 1.09002 * 113.61165 * 25.43506 * 13 10 9 40 40 H 1.08995 * 109.47655 * 299.99265 * 17 16 14 41 41 H 1.08996 * 109.47273 * 60.00371 * 17 16 14 42 42 H 1.08001 * 120.00047 * 0.02562 * 19 18 17 43 43 H 1.07996 * 119.99592 * 180.25215 * 20 19 18 44 44 H 1.07994 * 119.99988 * 179.76349 * 21 20 19 45 45 H 1.07995 * 120.00071 * 179.97438 * 22 21 20 46 46 H 1.07998 * 120.00754 * 180.02562 * 23 22 21 47 47 H 1.08991 * 113.61740 * 334.56869 * 24 10 9 48 48 H 1.09002 * 113.61269 * 105.39032 * 24 10 9 49 49 H 1.07998 * 120.45106 * 180.27176 * 25 7 6 50 50 H 1.07998 * 120.75258 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.6378 -0.0198 2.1945 6 7 3.0820 -0.6315 3.2763 7 6 2.8696 -1.9223 3.4805 8 7 3.3552 -2.5260 4.6346 9 6 3.1235 -3.9537 4.8674 10 6 3.8469 -4.3862 6.1443 11 6 3.2789 -3.7252 7.4019 12 8 1.8812 -4.0068 7.4981 13 6 4.0148 -5.9095 6.2714 14 6 5.4245 -5.6275 6.8219 15 1 5.4514 -5.4972 7.9038 16 8 6.4200 -6.5365 6.3476 17 6 6.9503 -7.3965 7.3582 18 6 7.9850 -8.3080 6.7498 19 6 7.6088 -9.5350 6.2362 20 6 8.5571 -10.3689 5.6738 21 6 9.8830 -9.9800 5.6339 22 6 10.2600 -8.7554 6.1527 23 6 9.3110 -7.9192 6.7104 24 6 5.3791 -4.3024 6.0427 25 6 2.1649 -2.6798 2.5503 26 6 1.6870 -2.0661 1.4067 27 1 -0.3934 0.4417 0.7650 28 1 1.7924 -0.5138 -0.8899 29 1 1.5615 2.4678 -1.2086 30 1 1.5877 2.4587 1.2241 31 1 2.8296 1.0347 2.0617 32 1 3.8474 -2.0020 5.2858 33 1 2.0543 -4.1352 4.9763 34 1 3.5050 -4.5263 4.0220 35 1 3.7900 -4.1176 8.2811 36 1 3.4294 -2.6471 7.3452 37 1 1.4542 -3.6176 8.2735 38 1 3.3432 -6.3636 7.0001 39 1 4.0161 -6.4301 5.3137 40 1 7.4111 -6.7954 8.1419 41 1 6.1455 -7.9950 7.7850 42 1 6.5734 -9.8403 6.2706 43 1 8.2626 -11.3258 5.2689 44 1 10.6244 -10.6331 5.1980 45 1 11.2959 -8.4517 6.1220 46 1 9.6054 -6.9623 7.1154 47 1 5.7541 -4.3827 5.0225 48 1 5.8073 -3.4600 6.5860 49 1 1.9893 -3.7315 2.7212 50 1 1.1370 -2.6287 0.6668 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15111638_13915762.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:28:10 Heat of formation + Delta-G solvation = -24.199929 kcal Electronic energy + Delta-G solvation = -30599.362089 eV Core-core repulsion = 26366.258508 eV Total energy + Delta-G solvation = -4233.103581 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.63866 -41.06758 -40.18338 -38.35985 -37.95191 -36.89249 -36.01819 -33.38493 -32.80585 -31.82264 -31.63934 -29.23722 -27.56455 -27.09121 -26.75830 -25.73216 -24.68584 -23.51024 -23.13572 -22.29667 -22.22638 -19.71809 -18.77805 -18.65873 -18.45215 -18.00152 -17.73677 -17.33350 -16.70416 -16.61268 -16.38233 -16.33887 -16.10127 -15.91631 -15.60754 -15.59803 -15.26528 -15.06625 -14.81542 -14.32545 -14.25830 -14.08298 -14.05076 -13.93997 -13.88437 -13.46959 -13.39853 -13.25330 -12.92938 -12.74091 -12.39673 -12.29122 -11.98478 -11.90607 -11.79700 -11.76135 -11.55069 -11.13753 -10.99258 -10.65862 -10.49353 -10.47352 -10.28976 -9.83643 -9.77428 -8.63388 -4.91344 0.32497 0.33133 0.48682 0.50341 1.34970 1.63244 2.00834 2.08799 2.52587 2.87652 2.93454 3.05884 3.30846 3.40982 3.46538 3.55867 3.66722 3.72686 3.82134 3.84538 3.87006 3.94372 3.97960 4.08523 4.09069 4.18520 4.21301 4.27289 4.30786 4.31826 4.35615 4.43274 4.53687 4.58706 4.61730 4.62389 4.70128 4.71601 4.76605 4.82031 4.89855 5.02973 5.05130 5.08257 5.08811 5.10855 5.37008 5.52462 5.58098 5.60111 5.63541 6.04545 6.05193 6.18779 6.47232 6.49496 6.58859 7.23096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.059 4.059 3 Si 0.680 3.320 4 C -0.236 4.236 5 C 0.155 3.845 6 N -0.541 5.541 7 C 0.410 3.590 8 N -0.718 5.718 9 C 0.150 3.850 10 C -0.093 4.093 11 C 0.098 3.902 12 O -0.566 6.566 13 C -0.134 4.134 14 C 0.062 3.938 15 H 0.088 0.912 16 O -0.364 6.364 17 C 0.102 3.898 18 C -0.094 4.094 19 C -0.099 4.099 20 C -0.123 4.123 21 C -0.113 4.113 22 C -0.123 4.123 23 C -0.099 4.099 24 C -0.121 4.121 25 C -0.238 4.238 26 C -0.005 4.005 27 H 0.375 0.625 28 H 0.116 0.884 29 H -0.256 1.256 30 H -0.259 1.259 31 H 0.154 0.846 32 H 0.403 0.597 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.383 0.617 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.122 0.878 47 H 0.101 0.899 48 H 0.076 0.924 49 H 0.132 0.868 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.439 -1.641 3.679 4.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.170 4.170 3 Si 0.581 3.419 4 C -0.241 4.241 5 C -0.003 4.003 6 N -0.258 5.258 7 C 0.174 3.826 8 N -0.350 5.350 9 C 0.026 3.974 10 C -0.093 4.093 11 C 0.020 3.980 12 O -0.372 6.372 13 C -0.172 4.172 14 C 0.004 3.996 15 H 0.106 0.894 16 O -0.283 6.283 17 C 0.026 3.974 18 C -0.094 4.094 19 C -0.117 4.117 20 C -0.141 4.141 21 C -0.131 4.131 22 C -0.141 4.141 23 C -0.117 4.117 24 C -0.159 4.159 25 C -0.263 4.263 26 C -0.030 4.030 27 H 0.222 0.778 28 H 0.134 0.866 29 H -0.181 1.181 30 H -0.184 1.184 31 H 0.171 0.829 32 H 0.239 0.761 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.231 0.769 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.140 0.860 47 H 0.119 0.881 48 H 0.095 0.905 49 H 0.150 0.850 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.922 -1.203 3.040 4.384 hybrid contribution -1.475 -0.182 1.013 1.799 sum 1.447 -1.385 4.053 4.521 Atomic orbital electron populations 1.86591 1.18032 1.79934 1.49294 1.24749 0.83635 1.10547 0.98023 0.95110 0.91705 0.74757 0.80309 1.20896 1.07233 0.95978 1.00000 1.22247 0.91404 0.98967 0.87684 1.67154 1.25998 1.09043 1.23645 1.18368 0.89141 0.88411 0.86663 1.44420 1.60535 1.09347 1.20745 1.21247 1.00594 0.80004 0.95544 1.21785 0.95377 0.97578 0.94600 1.21875 0.82311 0.98160 0.95616 1.86453 1.21481 1.78588 1.50693 1.23506 0.96508 0.94004 1.03216 1.23733 0.87909 0.90097 0.97857 0.89390 1.88055 1.55846 1.49773 1.34612 1.21376 0.94537 0.91444 0.90058 1.19580 0.93872 0.94906 1.01028 1.21078 0.99620 0.93775 0.97217 1.21194 0.93281 0.99925 0.99705 1.21258 0.96333 0.96572 0.98959 1.21192 0.99659 0.94547 0.98714 1.21074 0.92500 0.99361 0.98777 1.23286 0.93087 0.96727 1.02760 1.21453 1.06624 1.01416 0.96785 1.21188 0.93063 0.93405 0.95385 0.77761 0.86639 1.18119 1.18388 0.82898 0.76129 0.90772 0.91409 0.93104 0.93160 0.76918 0.90243 0.88559 0.92344 0.92299 0.85937 0.85774 0.85849 0.85777 0.85961 0.88054 0.90486 0.84981 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.95 12.84 -35.23 -0.45 -1.41 16 2 C -0.06 -0.02 2.82 36.01 0.10 0.08 16 3 Si 0.68 -0.29 29.91 -169.99 -5.08 -5.38 16 4 C -0.24 -0.29 5.36 -104.46 -0.56 -0.85 16 5 C 0.15 0.28 9.84 -17.57 -0.17 0.11 16 6 N -0.54 -1.78 10.39 -12.44 -0.13 -1.90 16 7 C 0.41 0.97 7.65 -155.02 -1.19 -0.22 16 8 N -0.72 -0.25 5.50 -60.43 -0.33 -0.58 16 9 C 0.15 -0.11 4.12 -4.05 -0.02 -0.13 16 10 C -0.09 0.17 0.66 -153.69 -0.10 0.07 16 11 C 0.10 -0.23 6.16 37.16 0.23 0.00 16 12 O -0.57 0.63 13.02 -35.23 -0.46 0.17 16 13 C -0.13 0.17 7.08 -25.83 -0.18 -0.01 16 14 C 0.06 -0.08 3.96 -25.83 -0.10 -0.18 16 15 H 0.09 -0.22 7.33 -51.93 -0.38 -0.60 16 16 O -0.36 -0.40 10.34 -35.23 -0.36 -0.77 16 17 C 0.10 -0.01 5.90 36.01 0.21 0.20 16 18 C -0.09 -0.12 5.51 -104.62 -0.58 -0.69 16 19 C -0.10 -0.11 9.70 -39.58 -0.38 -0.49 16 20 C -0.12 -0.09 10.05 -39.58 -0.40 -0.49 16 21 C -0.11 -0.08 10.05 -39.58 -0.40 -0.48 16 22 C -0.12 -0.09 10.05 -39.58 -0.40 -0.49 16 23 C -0.10 -0.10 9.70 -39.58 -0.38 -0.49 16 24 C -0.12 0.20 6.90 -25.92 -0.18 0.02 16 25 C -0.24 -0.38 9.31 -39.23 -0.37 -0.74 16 26 C 0.00 -0.01 9.84 -39.32 -0.39 -0.39 16 27 H 0.37 -0.32 8.70 45.56 0.40 0.08 16 28 H 0.12 -0.05 7.96 -51.93 -0.41 -0.46 16 29 H -0.26 -0.71 7.11 56.52 0.40 -0.31 16 30 H -0.26 -0.38 7.01 56.52 0.40 0.02 16 31 H 0.15 -0.01 4.85 -52.49 -0.25 -0.26 16 32 H 0.40 -0.06 7.85 -40.82 -0.32 -0.38 16 33 H 0.07 0.03 7.63 -51.93 -0.40 -0.36 16 34 H 0.07 -0.05 7.63 -51.93 -0.40 -0.45 16 35 H 0.05 -0.17 7.31 -51.93 -0.38 -0.55 16 36 H 0.05 -0.13 7.47 -51.93 -0.39 -0.52 16 37 H 0.38 -1.79 9.12 45.56 0.42 -1.37 16 38 H 0.08 -0.08 8.10 -51.93 -0.42 -0.51 16 39 H 0.10 -0.07 8.05 -51.93 -0.42 -0.49 16 40 H 0.06 -0.08 8.09 -51.93 -0.42 -0.50 16 41 H 0.06 -0.07 8.08 -51.93 -0.42 -0.49 16 42 H 0.12 -0.04 8.06 -52.49 -0.42 -0.46 16 43 H 0.12 -0.12 8.06 -52.49 -0.42 -0.55 16 44 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 45 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 46 H 0.12 -0.05 8.06 -52.49 -0.42 -0.47 16 47 H 0.10 -0.04 8.10 -51.93 -0.42 -0.46 16 48 H 0.08 -0.19 8.10 -51.93 -0.42 -0.61 16 49 H 0.13 0.02 6.70 -52.49 -0.35 -0.33 16 50 H 0.13 0.03 8.06 -52.49 -0.42 -0.39 16 LS Contribution 410.16 15.07 6.18 6.18 Total: 0.00 -7.77 410.16 -12.61 -20.38 By element: Atomic # 1 Polarization: -4.80 SS G_CDS: -6.73 Total: -11.52 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -5.25 Total: -5.17 kcal Atomic # 7 Polarization: -2.03 SS G_CDS: -0.46 Total: -2.49 kcal Atomic # 8 Polarization: -0.73 SS G_CDS: -1.28 Total: -2.00 kcal Atomic # 14 Polarization: -0.29 SS G_CDS: -5.08 Total: -5.38 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -7.77 -12.61 -20.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15111638_13915762.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.821 kcal (2) G-P(sol) polarization free energy of solvation -7.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds