Wall clock time and date at job start Mon Mar 8 2021 08:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86300 * 109.46884 * 2 1 4 4 C 1.50700 * 109.46915 * 119.99504 * 2 1 3 5 5 C 1.38026 * 120.33541 * 245.02869 * 4 2 1 6 6 N 1.31977 * 120.85551 * 179.97438 * 5 4 2 7 7 C 1.32398 * 121.62142 * 359.97438 * 6 5 4 8 8 N 1.39003 * 119.70289 * 180.02562 * 7 6 5 9 9 C 1.46495 * 120.00119 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47332 * 175.69248 * 9 8 7 11 11 C 1.53007 * 112.84886 * 65.43938 * 10 9 8 12 12 O 1.42898 * 109.47176 * 56.46523 * 11 10 9 13 13 C 1.53783 * 113.61703 * 196.63205 * 10 9 8 14 14 C 1.53948 * 87.01919 * 139.95328 * 13 10 9 15 15 H 1.09003 * 113.54019 * 89.19275 * 14 13 10 16 16 O 1.42908 * 113.74350 * 220.05942 * 14 13 10 17 17 C 1.42902 * 113.99445 * 247.59804 * 16 14 13 18 18 C 1.50710 * 109.46695 * 179.97438 * 17 16 14 19 19 C 1.38234 * 119.99774 * 269.72707 * 18 17 16 20 20 C 1.38240 * 119.99578 * 179.76491 * 19 18 17 21 21 C 1.38234 * 120.00135 * 0.48263 * 20 19 18 22 22 C 1.38238 * 119.99747 * 359.79394 * 21 20 19 23 23 C 1.38231 * 120.00455 * 359.95487 * 22 21 20 24 24 C 1.53782 * 113.61415 * 294.24013 * 10 9 8 25 25 C 1.39129 * 120.59108 * 0.02562 * 7 6 5 26 26 C 1.38302 * 119.09878 * 359.97438 * 25 7 6 27 27 H 0.96701 * 114.00859 * 300.00476 * 1 2 3 28 28 H 1.08993 * 109.47555 * 239.99875 * 2 1 3 29 29 H 1.48500 * 109.99978 * 299.99386 * 3 2 1 30 30 H 1.48500 * 110.00446 * 61.31259 * 3 2 1 31 31 H 1.08000 * 119.57132 * 359.97438 * 5 4 2 32 32 H 0.97006 * 119.99931 * 359.97438 * 8 7 6 33 33 H 1.08994 * 109.47072 * 295.69417 * 9 8 7 34 34 H 1.09002 * 109.47211 * 55.69017 * 9 8 7 35 35 H 1.09003 * 109.47178 * 176.46748 * 11 10 9 36 36 H 1.09005 * 109.46791 * 296.46243 * 11 10 9 37 37 H 0.96695 * 113.99687 * 180.02562 * 12 11 10 38 38 H 1.09002 * 113.61610 * 254.53425 * 13 10 9 39 39 H 1.09002 * 113.61165 * 25.43506 * 13 10 9 40 40 H 1.08995 * 109.47655 * 299.99265 * 17 16 14 41 41 H 1.08996 * 109.47273 * 60.00371 * 17 16 14 42 42 H 1.08001 * 120.00047 * 0.02562 * 19 18 17 43 43 H 1.07996 * 119.99592 * 180.25215 * 20 19 18 44 44 H 1.07994 * 119.99988 * 179.76349 * 21 20 19 45 45 H 1.07995 * 120.00071 * 179.97438 * 22 21 20 46 46 H 1.07998 * 120.00754 * 180.02562 * 23 22 21 47 47 H 1.08991 * 113.61740 * 334.56869 * 24 10 9 48 48 H 1.09002 * 113.61269 * 105.39032 * 24 10 9 49 49 H 1.07998 * 120.45106 * 180.27176 * 25 7 6 50 50 H 1.07998 * 120.75258 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.6378 -0.0198 2.1945 6 7 3.0820 -0.6315 3.2763 7 6 2.8696 -1.9223 3.4805 8 7 3.3552 -2.5260 4.6346 9 6 3.1235 -3.9537 4.8674 10 6 3.8469 -4.3862 6.1443 11 6 3.2789 -3.7252 7.4019 12 8 1.8812 -4.0068 7.4981 13 6 4.0148 -5.9095 6.2714 14 6 5.4245 -5.6275 6.8219 15 1 5.4514 -5.4972 7.9038 16 8 6.4200 -6.5365 6.3476 17 6 6.9503 -7.3965 7.3582 18 6 7.9850 -8.3080 6.7498 19 6 7.6088 -9.5350 6.2362 20 6 8.5571 -10.3689 5.6738 21 6 9.8830 -9.9800 5.6339 22 6 10.2600 -8.7554 6.1527 23 6 9.3110 -7.9192 6.7104 24 6 5.3791 -4.3024 6.0427 25 6 2.1649 -2.6798 2.5503 26 6 1.6870 -2.0661 1.4067 27 1 -0.3934 0.4417 0.7650 28 1 1.7924 -0.5138 -0.8899 29 1 1.5615 2.4678 -1.2086 30 1 1.5877 2.4587 1.2241 31 1 2.8296 1.0347 2.0617 32 1 3.8474 -2.0020 5.2858 33 1 2.0543 -4.1352 4.9763 34 1 3.5050 -4.5263 4.0220 35 1 3.7900 -4.1176 8.2811 36 1 3.4294 -2.6471 7.3452 37 1 1.4542 -3.6176 8.2735 38 1 3.3432 -6.3636 7.0001 39 1 4.0161 -6.4301 5.3137 40 1 7.4111 -6.7954 8.1419 41 1 6.1455 -7.9950 7.7850 42 1 6.5734 -9.8403 6.2706 43 1 8.2626 -11.3258 5.2689 44 1 10.6244 -10.6331 5.1980 45 1 11.2959 -8.4517 6.1220 46 1 9.6054 -6.9623 7.1154 47 1 5.7541 -4.3827 5.0225 48 1 5.8073 -3.4600 6.5860 49 1 1.9893 -3.7315 2.7212 50 1 1.1370 -2.6287 0.6668 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15111638_13915762.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:28:09 Heat of formation + Delta-G solvation = -22.762280 kcal Electronic energy + Delta-G solvation = -30599.299747 eV Core-core repulsion = 26366.258508 eV Total energy + Delta-G solvation = -4233.041240 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.62008 -41.07897 -40.16643 -38.35771 -37.96880 -36.79560 -36.03125 -33.48584 -32.79683 -31.82440 -31.69727 -29.18678 -27.47900 -27.02655 -26.68273 -25.75407 -24.76633 -23.51519 -23.10278 -22.30002 -22.25671 -19.62658 -18.78843 -18.64856 -18.40333 -17.95352 -17.72513 -17.37536 -16.65376 -16.57054 -16.44621 -16.34454 -16.10873 -15.82222 -15.62422 -15.57855 -15.27610 -15.03832 -14.82945 -14.37626 -14.29694 -14.09215 -14.02768 -13.93306 -13.86174 -13.39466 -13.37005 -13.33152 -12.84344 -12.68452 -12.46355 -12.19122 -12.03868 -11.95618 -11.75406 -11.64999 -11.43827 -11.14984 -10.85460 -10.75527 -10.54162 -10.43405 -10.40468 -9.85990 -9.79195 -8.69813 -4.90650 0.22958 0.30764 0.39714 0.46261 1.33933 1.60465 1.96192 2.06753 2.56281 2.82555 3.04646 3.09672 3.41275 3.46049 3.54550 3.61837 3.67977 3.78621 3.82686 3.89472 3.92894 4.02233 4.06769 4.11490 4.11865 4.13816 4.25956 4.32871 4.34250 4.41348 4.51101 4.52485 4.59321 4.60927 4.64060 4.70638 4.74054 4.76396 4.77812 4.85177 4.99145 5.02345 5.05000 5.11863 5.14701 5.19262 5.29662 5.51748 5.51866 5.58753 5.62174 5.99354 6.06093 6.27206 6.50205 6.53554 6.84286 7.13510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.064 4.064 3 Si 0.759 3.241 4 C -0.235 4.235 5 C 0.146 3.854 6 N -0.563 5.563 7 C 0.397 3.603 8 N -0.712 5.712 9 C 0.155 3.845 10 C -0.085 4.085 11 C 0.098 3.902 12 O -0.586 6.586 13 C -0.133 4.133 14 C 0.062 3.938 15 H 0.105 0.895 16 O -0.385 6.385 17 C 0.102 3.898 18 C -0.108 4.108 19 C -0.113 4.113 20 C -0.134 4.134 21 C -0.125 4.125 22 C -0.134 4.134 23 C -0.113 4.113 24 C -0.117 4.117 25 C -0.245 4.245 26 C -0.011 4.011 27 H 0.384 0.616 28 H 0.125 0.875 29 H -0.300 1.300 30 H -0.282 1.282 31 H 0.168 0.832 32 H 0.405 0.595 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.397 0.603 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.132 0.868 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.142 0.858 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.740 -1.674 4.251 5.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.174 4.174 3 Si 0.664 3.336 4 C -0.240 4.240 5 C -0.011 4.011 6 N -0.281 5.281 7 C 0.160 3.840 8 N -0.344 5.344 9 C 0.031 3.969 10 C -0.086 4.086 11 C 0.020 3.980 12 O -0.394 6.394 13 C -0.172 4.172 14 C 0.004 3.996 15 H 0.123 0.877 16 O -0.304 6.304 17 C 0.026 3.974 18 C -0.108 4.108 19 C -0.131 4.131 20 C -0.152 4.152 21 C -0.143 4.143 22 C -0.152 4.152 23 C -0.131 4.131 24 C -0.155 4.155 25 C -0.270 4.270 26 C -0.036 4.036 27 H 0.233 0.767 28 H 0.143 0.857 29 H -0.228 1.228 30 H -0.209 1.209 31 H 0.184 0.816 32 H 0.241 0.759 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.247 0.753 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.149 0.851 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.156 0.844 46 H 0.150 0.850 47 H 0.105 0.895 48 H 0.107 0.893 49 H 0.159 0.841 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.226 -1.254 3.640 5.023 hybrid contribution -1.605 -0.175 0.819 1.810 sum 1.622 -1.429 4.459 4.955 Atomic orbital electron populations 1.86561 1.18789 1.80330 1.50093 1.24931 0.83103 1.11322 0.98054 0.94166 0.90456 0.72404 0.76525 1.20951 1.06999 0.95978 1.00093 1.22510 0.91419 0.99658 0.87542 1.67166 1.26888 1.09594 1.24438 1.18602 0.89524 0.88465 0.87374 1.44436 1.60130 1.09613 1.20245 1.21208 1.00048 0.79470 0.96170 1.21726 0.95189 0.97198 0.94457 1.21919 0.82009 0.98392 0.95631 1.86414 1.22132 1.79038 1.51860 1.23465 0.96690 0.94242 1.02756 1.23862 0.87232 0.89709 0.98762 0.87723 1.88026 1.56442 1.50333 1.35629 1.21437 0.94569 0.91464 0.89937 1.19843 0.94423 0.95308 1.01186 1.21307 1.00263 0.94049 0.97502 1.21463 0.93457 1.00575 0.99687 1.21537 0.96775 0.96932 0.99034 1.21467 1.00471 0.94659 0.98564 1.21311 0.92689 0.99981 0.99083 1.23217 0.93080 0.97071 1.02097 1.21609 1.06606 1.01942 0.96825 1.21394 0.93009 0.93695 0.95550 0.76663 0.85748 1.22750 1.20889 0.81582 0.75866 0.91835 0.91535 0.91710 0.92718 0.75301 0.90299 0.89492 0.91169 0.91494 0.85109 0.84409 0.84351 0.84352 0.84973 0.89465 0.89321 0.84054 0.83757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.95 12.84 -148.98 -1.91 -3.86 16 2 C -0.06 -0.03 2.82 71.24 0.20 0.17 16 3 Si 0.76 -0.63 29.91 68.60 2.05 1.42 16 4 C -0.23 -0.56 5.36 -19.76 -0.11 -0.67 16 5 C 0.15 0.54 9.84 84.62 0.83 1.37 16 6 N -0.56 -3.89 10.39 -193.26 -2.01 -5.90 16 7 C 0.40 2.06 7.65 133.06 1.02 3.08 16 8 N -0.71 -0.77 5.50 -345.10 -1.90 -2.67 16 9 C 0.16 -0.15 4.12 86.38 0.36 0.21 16 10 C -0.09 0.31 0.66 -51.65 -0.03 0.28 16 11 C 0.10 -0.52 6.16 71.98 0.44 -0.07 16 12 O -0.59 1.51 13.02 -148.98 -1.94 -0.43 16 13 C -0.13 0.32 7.08 31.18 0.22 0.54 16 14 C 0.06 -0.17 3.96 31.18 0.12 -0.05 16 15 H 0.11 -0.66 7.33 -2.39 -0.02 -0.68 16 16 O -0.38 -0.91 10.34 -148.98 -1.54 -2.45 16 17 C 0.10 -0.03 5.90 71.24 0.42 0.39 16 18 C -0.11 -0.31 5.51 -19.86 -0.11 -0.42 16 19 C -0.11 -0.30 9.70 22.27 0.22 -0.08 16 20 C -0.13 -0.25 10.05 22.27 0.22 -0.02 16 21 C -0.12 -0.19 10.05 22.27 0.22 0.04 16 22 C -0.13 -0.23 10.05 22.27 0.22 0.00 16 23 C -0.11 -0.27 9.70 22.27 0.22 -0.06 16 24 C -0.12 0.40 6.90 31.12 0.21 0.62 16 25 C -0.24 -0.87 9.31 22.50 0.21 -0.66 16 26 C -0.01 -0.03 9.84 22.44 0.22 0.19 16 27 H 0.38 -0.61 8.70 -74.06 -0.64 -1.25 16 28 H 0.12 -0.17 7.96 -2.39 -0.02 -0.19 16 29 H -0.30 -1.94 7.11 99.48 0.71 -1.23 16 30 H -0.28 -0.84 7.01 99.48 0.70 -0.14 16 31 H 0.17 -0.04 4.85 -2.91 -0.01 -0.06 16 32 H 0.41 -0.05 7.85 -92.70 -0.73 -0.77 16 33 H 0.06 0.10 7.63 -2.39 -0.02 0.08 16 34 H 0.07 -0.05 7.63 -2.39 -0.02 -0.07 16 35 H 0.06 -0.52 7.31 -2.39 -0.02 -0.53 16 36 H 0.05 -0.33 7.47 -2.38 -0.02 -0.35 16 37 H 0.40 -3.88 9.12 -74.06 -0.68 -4.55 16 38 H 0.08 -0.17 8.10 -2.39 -0.02 -0.19 16 39 H 0.09 -0.05 8.05 -2.39 -0.02 -0.06 16 40 H 0.07 -0.22 8.09 -2.39 -0.02 -0.24 16 41 H 0.07 -0.16 8.08 -2.39 -0.02 -0.18 16 42 H 0.13 -0.02 8.06 -2.91 -0.02 -0.04 16 43 H 0.14 -0.27 8.06 -2.91 -0.02 -0.29 16 44 H 0.14 -0.34 8.06 -2.91 -0.02 -0.36 16 45 H 0.14 -0.30 8.06 -2.91 -0.02 -0.32 16 46 H 0.13 -0.08 8.06 -2.91 -0.02 -0.11 16 47 H 0.09 -0.02 8.10 -2.39 -0.02 -0.04 16 48 H 0.09 -0.51 8.10 -2.39 -0.02 -0.53 16 49 H 0.14 0.12 6.70 -2.91 -0.02 0.10 16 50 H 0.14 0.04 8.06 -2.91 -0.02 0.02 16 Total: 0.00 -17.89 410.16 -3.17 -21.07 By element: Atomic # 1 Polarization: -10.96 SS G_CDS: -1.04 Total: -12.00 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 5.11 Total: 4.83 kcal Atomic # 7 Polarization: -4.67 SS G_CDS: -3.91 Total: -8.57 kcal Atomic # 8 Polarization: -1.35 SS G_CDS: -5.39 Total: -6.74 kcal Atomic # 14 Polarization: -0.63 SS G_CDS: 2.05 Total: 1.42 kcal Total: -17.89 -3.17 -21.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15111638_13915762.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.694 kcal (2) G-P(sol) polarization free energy of solvation -17.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds