Wall clock time and date at job start Mon Mar 8 2021 08:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86297 * 109.47121 * 2 1 4 4 C 1.50699 * 109.47411 * 239.99668 * 2 1 3 5 5 C 1.33326 * 125.94849 * 300.00238 * 4 2 1 6 6 N 1.32126 * 114.57911 * 179.97438 * 5 4 2 7 7 C 1.29693 * 116.86175 * 0.02562 * 6 5 4 8 8 N 1.38609 * 124.94775 * 179.97438 * 7 6 5 9 9 C 1.46510 * 119.99983 * 359.74876 * 8 7 6 10 10 C 1.52999 * 109.47291 * 175.20262 * 9 8 7 11 11 C 1.52999 * 112.84790 * 293.60642 * 10 9 8 12 12 O 1.42903 * 109.47046 * 295.61467 * 11 10 9 13 13 C 1.53782 * 113.61153 * 64.79801 * 10 9 8 14 14 C 1.53778 * 87.07787 * 139.98257 * 13 10 9 15 15 H 1.09000 * 113.61705 * 89.12217 * 14 13 10 16 16 O 1.42904 * 113.61208 * 219.93097 * 14 13 10 17 17 C 1.42899 * 114.00482 * 209.99829 * 16 14 13 18 18 C 1.50689 * 109.47571 * 180.02562 * 17 16 14 19 19 C 1.38239 * 119.99944 * 269.73149 * 18 17 16 20 20 C 1.38240 * 120.00131 * 179.78871 * 19 18 17 21 21 C 1.38240 * 119.99511 * 0.43788 * 20 19 18 22 22 C 1.38225 * 120.00277 * 359.81003 * 21 20 19 23 23 C 1.38234 * 120.00286 * 359.97438 * 22 21 20 24 24 C 1.53778 * 87.08417 * 334.56689 * 14 13 10 25 25 S 1.70965 * 110.10230 * 0.23824 * 7 6 5 26 26 H 0.96700 * 114.00745 * 300.00511 * 1 2 3 27 27 H 1.09009 * 109.46753 * 119.99816 * 2 1 3 28 28 H 1.48494 * 110.00258 * 299.99332 * 3 2 1 29 29 H 1.48493 * 110.00324 * 61.31804 * 3 2 1 30 30 H 1.08002 * 122.71568 * 0.02562 * 5 4 2 31 31 H 0.96995 * 120.00367 * 180.02562 * 8 7 6 32 32 H 1.09003 * 109.47097 * 295.20905 * 9 8 7 33 33 H 1.08998 * 109.46867 * 55.20123 * 9 8 7 34 34 H 1.08998 * 109.47495 * 55.61941 * 11 10 9 35 35 H 1.09003 * 109.46735 * 175.61985 * 11 10 9 36 36 H 0.96696 * 114.00090 * 180.02562 * 12 11 10 37 37 H 1.09004 * 113.61484 * 254.53127 * 13 10 9 38 38 H 1.09002 * 113.61583 * 25.43118 * 13 10 9 39 39 H 1.08998 * 109.46949 * 300.00878 * 17 16 14 40 40 H 1.09001 * 109.46575 * 60.00102 * 17 16 14 41 41 H 1.08003 * 120.00014 * 359.97438 * 19 18 17 42 42 H 1.08000 * 120.00287 * 180.27477 * 20 19 18 43 43 H 1.08002 * 119.99245 * 179.83707 * 21 20 19 44 44 H 1.08005 * 119.99903 * 180.02562 * 22 21 20 45 45 H 1.08002 * 120.00572 * 179.97438 * 23 22 21 46 46 H 1.09003 * 113.61528 * 270.88652 * 24 14 13 47 47 H 1.08996 * 113.61787 * 139.98152 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6834 -1.9789 -1.5578 6 7 2.2376 -2.3724 -2.6909 7 6 2.9424 -1.4942 -3.3345 8 7 3.5957 -1.7256 -4.5348 9 6 3.5224 -3.0457 -5.1661 10 6 4.2221 -3.0003 -6.5260 11 6 3.5001 -2.1062 -7.5360 12 8 2.2116 -2.6541 -7.8215 13 6 5.7329 -2.7290 -6.4326 14 6 5.9088 -3.7665 -7.5539 15 1 5.8559 -3.3401 -8.5556 16 8 7.0416 -4.6186 -7.3728 17 6 7.6224 -5.0809 -8.5938 18 6 8.8019 -5.9666 -8.2854 19 6 10.0656 -5.4187 -8.1677 20 6 11.1470 -6.2305 -7.8805 21 6 10.9660 -7.5916 -7.7199 22 6 9.7032 -8.1402 -7.8427 23 6 8.6212 -7.3278 -8.1255 24 6 4.5853 -4.3887 -7.0785 25 16 2.9541 -0.0118 -2.4830 26 1 -0.3934 0.4417 0.7650 27 1 1.7922 -0.5139 0.8901 28 1 1.5616 2.4678 -1.2085 29 1 1.5879 2.4586 1.2241 30 1 1.0778 -2.6318 -0.9468 31 1 4.1048 -1.0149 -4.9548 32 1 4.0138 -3.7810 -4.5289 33 1 2.4778 -3.3249 -5.3041 34 1 3.3853 -1.1058 -7.1188 35 1 4.0836 -2.0518 -8.4552 36 1 1.6966 -2.1378 -8.4565 37 1 6.0138 -1.7174 -6.7256 38 1 6.1733 -3.0333 -5.4830 39 1 6.8808 -5.6471 -9.1574 40 1 7.9535 -4.2270 -9.1848 41 1 10.2076 -4.3559 -8.2972 42 1 12.1336 -5.8019 -7.7841 43 1 11.8113 -8.2262 -7.4981 44 1 9.5618 -9.2035 -7.7169 45 1 7.6345 -7.7564 -8.2219 46 1 4.7119 -5.1468 -6.3056 47 1 3.9397 -4.7170 -7.8931 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15111638_15704118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:28:15 Heat of formation + Delta-G solvation = -13.903100 kcal Electronic energy + Delta-G solvation = -28990.689961 eV Core-core repulsion = 24847.185131 eV Total energy + Delta-G solvation = -4143.504830 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.48374 -40.46767 -40.14182 -38.27044 -37.90099 -36.88635 -35.98098 -32.78791 -31.80420 -31.56552 -29.51786 -27.55284 -27.09699 -26.74957 -26.10474 -24.23384 -23.49234 -23.00968 -22.27079 -20.49615 -20.09401 -19.22818 -18.54498 -18.49164 -18.03503 -17.74556 -17.34076 -16.73623 -16.58517 -16.42658 -16.17557 -15.94017 -15.73902 -15.58410 -15.37924 -15.11410 -14.97377 -14.36514 -14.29549 -14.14786 -14.01180 -13.90824 -13.88029 -13.44015 -13.38775 -12.93735 -12.81168 -12.73483 -12.34731 -12.27505 -12.22021 -11.96634 -11.76908 -11.73754 -11.52422 -11.10289 -10.97533 -10.61841 -10.46215 -10.17122 -10.04985 -9.81843 -9.75566 -8.60190 -5.04476 0.06407 0.16182 0.34365 0.50467 0.78223 1.27585 1.56310 1.93295 2.15659 2.20134 2.54840 2.88943 3.08340 3.34656 3.39303 3.45904 3.58086 3.72500 3.83993 3.87862 3.90218 3.97715 4.02038 4.06946 4.10500 4.23154 4.28880 4.33015 4.36061 4.39167 4.45357 4.59125 4.60885 4.70796 4.73462 4.74488 4.87110 4.90451 4.94369 5.05126 5.11488 5.12641 5.13947 5.22843 5.54210 5.61816 5.65469 5.91339 6.07000 6.12467 6.21725 6.44238 6.54606 7.14037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.018 4.018 3 Si 0.651 3.349 4 C -0.263 4.263 5 C 0.120 3.880 6 N -0.549 5.549 7 C 0.327 3.673 8 N -0.690 5.690 9 C 0.158 3.842 10 C -0.096 4.096 11 C 0.099 3.901 12 O -0.565 6.565 13 C -0.124 4.124 14 C 0.063 3.937 15 H 0.088 0.912 16 O -0.364 6.364 17 C 0.102 3.898 18 C -0.094 4.094 19 C -0.099 4.099 20 C -0.123 4.123 21 C -0.113 4.113 22 C -0.123 4.123 23 C -0.098 4.098 24 C -0.132 4.132 25 S 0.089 5.911 26 H 0.380 0.620 27 H 0.084 0.916 28 H -0.240 1.240 29 H -0.242 1.242 30 H 0.175 0.825 31 H 0.412 0.588 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.383 0.617 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.096 0.904 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.590 2.359 -2.061 4.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.130 4.130 3 Si 0.550 3.450 4 C -0.385 4.385 5 C -0.031 4.031 6 N -0.274 5.274 7 C -0.043 4.043 8 N -0.330 5.330 9 C 0.032 3.968 10 C -0.097 4.097 11 C 0.021 3.979 12 O -0.371 6.371 13 C -0.162 4.162 14 C 0.005 3.995 15 H 0.106 0.894 16 O -0.283 6.283 17 C 0.026 3.974 18 C -0.094 4.094 19 C -0.117 4.117 20 C -0.141 4.141 21 C -0.131 4.131 22 C -0.141 4.141 23 C -0.117 4.117 24 C -0.170 4.170 25 S 0.338 5.662 26 H 0.229 0.771 27 H 0.101 0.899 28 H -0.164 1.164 29 H -0.165 1.165 30 H 0.192 0.808 31 H 0.248 0.752 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.230 0.770 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.115 0.885 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.129 2.654 -2.487 5.503 hybrid contribution -1.659 0.061 0.200 1.672 sum 2.470 2.715 -2.287 4.325 Atomic orbital electron populations 1.86616 1.17790 1.79951 1.49837 1.23698 0.84052 1.09708 0.95591 0.95248 0.91714 0.75490 0.82557 1.24274 1.12740 0.97979 1.03505 1.21296 0.96872 0.93179 0.91731 1.66488 1.17126 1.33543 1.10280 1.23682 0.95132 0.93337 0.92180 1.43956 1.54624 1.14847 1.19568 1.21250 1.01895 0.83219 0.90397 1.21853 0.94524 0.98330 0.95026 1.21864 0.84524 0.94981 0.96532 1.86481 1.28800 1.54616 1.67162 1.23322 0.93024 0.99171 1.00663 1.23689 0.85738 0.91618 0.98469 0.89396 1.88054 1.44936 1.65977 1.29334 1.21369 0.92893 0.96260 0.86885 1.19579 0.93899 0.93846 1.02041 1.21072 0.92170 0.99823 0.98669 1.21191 0.98960 0.93918 1.00066 1.21256 0.97414 0.95347 0.99122 1.21194 0.92794 1.00054 1.00056 1.21085 0.99082 0.93038 0.98454 1.23433 0.96099 0.95595 1.01854 1.83859 1.51049 1.13965 1.17323 0.77149 0.89869 1.16363 1.16529 0.80844 0.75159 0.91241 0.90117 0.93315 0.93167 0.76978 0.90535 0.87951 0.92290 0.92372 0.85977 0.85791 0.85862 0.85773 0.85915 0.88528 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.91 12.84 -35.23 -0.45 -1.36 16 2 C -0.02 -0.01 2.98 36.01 0.11 0.09 16 3 Si 0.65 -0.04 31.05 -169.99 -5.28 -5.32 16 4 C -0.26 -0.68 5.78 -36.02 -0.21 -0.89 16 5 C 0.12 0.44 11.22 -19.14 -0.21 0.23 16 6 N -0.55 -2.55 10.14 -15.21 -0.15 -2.71 16 7 C 0.33 0.87 8.09 -87.68 -0.71 0.16 16 8 N -0.69 -0.17 5.38 -62.29 -0.33 -0.51 16 9 C 0.16 0.10 5.22 -4.04 -0.02 0.08 16 10 C -0.10 0.13 0.63 -153.70 -0.10 0.03 16 11 C 0.10 -0.20 6.20 37.16 0.23 0.03 16 12 O -0.56 0.25 13.18 -35.23 -0.46 -0.22 16 13 C -0.12 0.23 6.73 -25.92 -0.17 0.05 16 14 C 0.06 -0.06 3.96 -25.92 -0.10 -0.17 16 15 H 0.09 -0.21 7.34 -51.93 -0.38 -0.59 16 16 O -0.36 -0.48 10.34 -35.23 -0.36 -0.85 16 17 C 0.10 0.01 5.90 36.00 0.21 0.22 16 18 C -0.09 -0.13 5.51 -104.63 -0.58 -0.71 16 19 C -0.10 -0.11 9.70 -39.58 -0.38 -0.50 16 20 C -0.12 -0.10 10.05 -39.58 -0.40 -0.50 16 21 C -0.11 -0.09 10.05 -39.59 -0.40 -0.49 16 22 C -0.12 -0.12 10.05 -39.59 -0.40 -0.52 16 23 C -0.10 -0.13 9.70 -39.58 -0.38 -0.51 16 24 C -0.13 0.07 7.00 -25.92 -0.18 -0.12 16 25 S 0.09 0.13 20.57 -107.50 -2.21 -2.08 16 26 H 0.38 -0.97 8.74 45.56 0.40 -0.58 16 27 H 0.08 -0.10 7.96 -51.92 -0.41 -0.52 16 28 H -0.24 -0.73 7.11 56.52 0.40 -0.33 16 29 H -0.24 -0.28 7.11 56.52 0.40 0.12 16 30 H 0.17 0.40 8.06 -52.49 -0.42 -0.02 16 31 H 0.41 -0.83 8.00 -40.82 -0.33 -1.15 16 32 H 0.07 0.11 8.05 -51.93 -0.42 -0.31 16 33 H 0.08 0.24 7.88 -51.93 -0.41 -0.17 16 34 H 0.05 -0.13 7.60 -51.93 -0.39 -0.53 16 35 H 0.05 -0.16 7.31 -51.93 -0.38 -0.54 16 36 H 0.38 -1.59 9.12 45.56 0.42 -1.18 16 37 H 0.08 -0.25 8.10 -51.93 -0.42 -0.67 16 38 H 0.10 -0.07 8.10 -51.93 -0.42 -0.49 16 39 H 0.06 -0.05 8.08 -51.93 -0.42 -0.47 16 40 H 0.06 -0.07 8.08 -51.93 -0.42 -0.49 16 41 H 0.12 -0.05 8.06 -52.48 -0.42 -0.47 16 42 H 0.12 -0.12 8.06 -52.49 -0.42 -0.54 16 43 H 0.12 -0.12 8.06 -52.49 -0.42 -0.54 16 44 H 0.12 -0.10 8.06 -52.48 -0.42 -0.52 16 45 H 0.12 0.00 8.06 -52.49 -0.42 -0.42 16 46 H 0.10 0.04 8.03 -51.93 -0.42 -0.38 16 47 H 0.08 -0.01 8.03 -51.93 -0.42 -0.42 16 LS Contribution 405.25 15.07 6.11 6.11 Total: 0.00 -8.64 405.25 -13.01 -21.65 By element: Atomic # 1 Polarization: -5.05 SS G_CDS: -6.16 Total: -11.21 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -3.70 Total: -3.50 kcal Atomic # 7 Polarization: -2.73 SS G_CDS: -0.49 Total: -3.22 kcal Atomic # 8 Polarization: -1.15 SS G_CDS: -1.28 Total: -2.43 kcal Atomic # 14 Polarization: -0.04 SS G_CDS: -5.28 Total: -5.32 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.21 Total: -2.08 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -8.64 -13.01 -21.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15111638_15704118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.744 kcal (2) G-P(sol) polarization free energy of solvation -8.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds