Wall clock time and date at job start Mon Mar 8 2021 08:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86297 * 109.47121 * 2 1 4 4 C 1.50699 * 109.47411 * 239.99668 * 2 1 3 5 5 C 1.33326 * 125.94849 * 300.00238 * 4 2 1 6 6 N 1.32126 * 114.57911 * 179.97438 * 5 4 2 7 7 C 1.29693 * 116.86175 * 0.02562 * 6 5 4 8 8 N 1.38609 * 124.94775 * 179.97438 * 7 6 5 9 9 C 1.46510 * 119.99983 * 359.74876 * 8 7 6 10 10 C 1.52999 * 109.47291 * 175.20262 * 9 8 7 11 11 C 1.52999 * 112.84790 * 293.60642 * 10 9 8 12 12 O 1.42903 * 109.47046 * 295.61467 * 11 10 9 13 13 C 1.53782 * 113.61153 * 64.79801 * 10 9 8 14 14 C 1.53778 * 87.07787 * 139.98257 * 13 10 9 15 15 H 1.09000 * 113.61705 * 89.12217 * 14 13 10 16 16 O 1.42904 * 113.61208 * 219.93097 * 14 13 10 17 17 C 1.42899 * 114.00482 * 209.99829 * 16 14 13 18 18 C 1.50689 * 109.47571 * 180.02562 * 17 16 14 19 19 C 1.38239 * 119.99944 * 269.73149 * 18 17 16 20 20 C 1.38240 * 120.00131 * 179.78871 * 19 18 17 21 21 C 1.38240 * 119.99511 * 0.43788 * 20 19 18 22 22 C 1.38225 * 120.00277 * 359.81003 * 21 20 19 23 23 C 1.38234 * 120.00286 * 359.97438 * 22 21 20 24 24 C 1.53778 * 87.08417 * 334.56689 * 14 13 10 25 25 S 1.70965 * 110.10230 * 0.23824 * 7 6 5 26 26 H 0.96700 * 114.00745 * 300.00511 * 1 2 3 27 27 H 1.09009 * 109.46753 * 119.99816 * 2 1 3 28 28 H 1.48494 * 110.00258 * 299.99332 * 3 2 1 29 29 H 1.48493 * 110.00324 * 61.31804 * 3 2 1 30 30 H 1.08002 * 122.71568 * 0.02562 * 5 4 2 31 31 H 0.96995 * 120.00367 * 180.02562 * 8 7 6 32 32 H 1.09003 * 109.47097 * 295.20905 * 9 8 7 33 33 H 1.08998 * 109.46867 * 55.20123 * 9 8 7 34 34 H 1.08998 * 109.47495 * 55.61941 * 11 10 9 35 35 H 1.09003 * 109.46735 * 175.61985 * 11 10 9 36 36 H 0.96696 * 114.00090 * 180.02562 * 12 11 10 37 37 H 1.09004 * 113.61484 * 254.53127 * 13 10 9 38 38 H 1.09002 * 113.61583 * 25.43118 * 13 10 9 39 39 H 1.08998 * 109.46949 * 300.00878 * 17 16 14 40 40 H 1.09001 * 109.46575 * 60.00102 * 17 16 14 41 41 H 1.08003 * 120.00014 * 359.97438 * 19 18 17 42 42 H 1.08000 * 120.00287 * 180.27477 * 20 19 18 43 43 H 1.08002 * 119.99245 * 179.83707 * 21 20 19 44 44 H 1.08005 * 119.99903 * 180.02562 * 22 21 20 45 45 H 1.08002 * 120.00572 * 179.97438 * 23 22 21 46 46 H 1.09003 * 113.61528 * 270.88652 * 24 14 13 47 47 H 1.08996 * 113.61787 * 139.98152 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6834 -1.9789 -1.5578 6 7 2.2376 -2.3724 -2.6909 7 6 2.9424 -1.4942 -3.3345 8 7 3.5957 -1.7256 -4.5348 9 6 3.5224 -3.0457 -5.1661 10 6 4.2221 -3.0003 -6.5260 11 6 3.5001 -2.1062 -7.5360 12 8 2.2116 -2.6541 -7.8215 13 6 5.7329 -2.7290 -6.4326 14 6 5.9088 -3.7665 -7.5539 15 1 5.8559 -3.3401 -8.5556 16 8 7.0416 -4.6186 -7.3728 17 6 7.6224 -5.0809 -8.5938 18 6 8.8019 -5.9666 -8.2854 19 6 10.0656 -5.4187 -8.1677 20 6 11.1470 -6.2305 -7.8805 21 6 10.9660 -7.5916 -7.7199 22 6 9.7032 -8.1402 -7.8427 23 6 8.6212 -7.3278 -8.1255 24 6 4.5853 -4.3887 -7.0785 25 16 2.9541 -0.0118 -2.4830 26 1 -0.3934 0.4417 0.7650 27 1 1.7922 -0.5139 0.8901 28 1 1.5616 2.4678 -1.2085 29 1 1.5879 2.4586 1.2241 30 1 1.0778 -2.6318 -0.9468 31 1 4.1048 -1.0149 -4.9548 32 1 4.0138 -3.7810 -4.5289 33 1 2.4778 -3.3249 -5.3041 34 1 3.3853 -1.1058 -7.1188 35 1 4.0836 -2.0518 -8.4552 36 1 1.6966 -2.1378 -8.4565 37 1 6.0138 -1.7174 -6.7256 38 1 6.1733 -3.0333 -5.4830 39 1 6.8808 -5.6471 -9.1574 40 1 7.9535 -4.2270 -9.1848 41 1 10.2076 -4.3559 -8.2972 42 1 12.1336 -5.8019 -7.7841 43 1 11.8113 -8.2262 -7.4981 44 1 9.5618 -9.2035 -7.7169 45 1 7.6345 -7.7564 -8.2219 46 1 4.7119 -5.1468 -6.3056 47 1 3.9397 -4.7170 -7.8931 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15111638_15704118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:28:14 Heat of formation + Delta-G solvation = -13.790630 kcal Electronic energy + Delta-G solvation = -28990.685084 eV Core-core repulsion = 24847.185131 eV Total energy + Delta-G solvation = -4143.499953 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.134 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.44364 -40.61531 -40.14974 -38.27378 -37.94120 -36.83749 -36.02957 -32.79316 -31.81888 -31.69179 -29.53111 -27.51298 -27.06256 -26.70526 -26.19451 -24.33430 -23.51037 -22.99394 -22.27774 -20.64646 -20.14119 -19.21074 -18.60303 -18.38200 -18.01734 -17.76051 -17.42359 -16.71405 -16.56819 -16.47601 -16.20266 -15.97687 -15.72819 -15.64503 -15.43592 -15.11688 -15.00275 -14.48422 -14.29479 -14.21344 -14.01371 -13.95139 -13.86379 -13.40121 -13.36562 -12.92000 -12.85515 -12.71105 -12.48848 -12.37968 -12.18031 -11.95348 -11.74387 -11.66074 -11.44563 -11.21638 -10.85085 -10.71809 -10.42210 -10.30859 -10.19538 -9.85481 -9.78658 -8.73365 -5.05038 -0.09478 0.01654 0.31296 0.46752 0.63228 1.22982 1.52939 1.88347 1.95814 2.13889 2.56792 3.03343 3.09258 3.40575 3.42903 3.55047 3.64477 3.69882 3.86754 3.90294 3.93568 3.97219 4.08286 4.12384 4.16302 4.26356 4.33843 4.41946 4.47359 4.50940 4.53880 4.61320 4.65265 4.69664 4.72078 4.74592 4.78501 4.85980 4.97863 5.05491 5.06208 5.12354 5.15411 5.21250 5.52258 5.59175 5.62760 5.76674 6.06610 6.12795 6.28347 6.58930 6.85819 7.00803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.027 4.027 3 Si 0.721 3.279 4 C -0.271 4.271 5 C 0.100 3.900 6 N -0.582 5.582 7 C 0.314 3.686 8 N -0.679 5.679 9 C 0.167 3.833 10 C -0.088 4.088 11 C 0.098 3.902 12 O -0.589 6.589 13 C -0.116 4.116 14 C 0.064 3.936 15 H 0.108 0.892 16 O -0.385 6.385 17 C 0.102 3.898 18 C -0.107 4.107 19 C -0.111 4.111 20 C -0.133 4.133 21 C -0.125 4.125 22 C -0.135 4.135 23 C -0.115 4.115 24 C -0.136 4.136 25 S 0.121 5.879 26 H 0.397 0.603 27 H 0.106 0.894 28 H -0.283 1.283 29 H -0.254 1.254 30 H 0.177 0.823 31 H 0.423 0.577 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.397 0.603 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.129 0.871 46 H 0.080 0.920 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.440 3.673 -2.352 6.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.139 4.139 3 Si 0.623 3.377 4 C -0.394 4.394 5 C -0.050 4.050 6 N -0.309 5.309 7 C -0.057 4.057 8 N -0.320 5.320 9 C 0.041 3.959 10 C -0.089 4.089 11 C 0.020 3.980 12 O -0.398 6.398 13 C -0.154 4.154 14 C 0.007 3.993 15 H 0.126 0.874 16 O -0.304 6.304 17 C 0.026 3.974 18 C -0.108 4.108 19 C -0.129 4.129 20 C -0.151 4.151 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.133 4.133 24 C -0.174 4.174 25 S 0.370 5.630 26 H 0.248 0.752 27 H 0.124 0.876 28 H -0.210 1.210 29 H -0.178 1.178 30 H 0.194 0.806 31 H 0.263 0.737 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.247 0.753 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.155 0.845 45 H 0.147 0.853 46 H 0.099 0.901 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.985 3.974 -2.775 6.954 hybrid contribution -1.973 -0.349 0.298 2.026 sum 3.012 3.625 -2.477 5.325 Atomic orbital electron populations 1.86567 1.18368 1.80520 1.51242 1.23968 0.83790 1.10522 0.95634 0.94465 0.90551 0.73308 0.79408 1.24628 1.12570 0.97940 1.04264 1.21430 0.97647 0.93964 0.91987 1.66475 1.18296 1.34950 1.11138 1.23934 0.95115 0.93883 0.92751 1.43937 1.54144 1.15036 1.18838 1.21060 1.00319 0.83145 0.91400 1.21795 0.94930 0.98144 0.94001 1.21957 0.84145 0.94856 0.97023 1.86446 1.29717 1.55686 1.67926 1.23251 0.92068 1.00183 0.99878 1.23810 0.84548 0.91322 0.99653 0.87444 1.88027 1.45619 1.66545 1.30255 1.21435 0.92618 0.96703 0.86659 1.19842 0.94643 0.94178 1.02094 1.21320 0.92230 1.00633 0.98734 1.21480 0.99744 0.94098 0.99784 1.21536 0.97916 0.95784 0.99048 1.21452 0.92945 1.00855 1.00001 1.21303 0.99618 0.93438 0.98912 1.23412 0.96853 0.95783 1.01358 1.83660 1.50364 1.12579 1.16418 0.75176 0.87619 1.20966 1.17850 0.80569 0.73720 0.92679 0.92747 0.92294 0.91277 0.75299 0.88200 0.89222 0.91738 0.90887 0.84745 0.84231 0.84348 0.84525 0.85340 0.90128 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.85 12.84 -148.98 -1.91 -3.76 16 2 C -0.03 -0.03 2.98 71.24 0.21 0.18 16 3 Si 0.72 -0.46 31.05 68.60 2.13 1.67 16 4 C -0.27 -1.50 5.78 24.57 0.14 -1.36 16 5 C 0.10 0.87 11.22 83.54 0.94 1.80 16 6 N -0.58 -6.34 10.14 -202.02 -2.05 -8.39 16 7 C 0.31 1.94 8.09 179.32 1.45 3.39 16 8 N -0.68 -0.72 5.38 -350.99 -1.89 -2.61 16 9 C 0.17 0.45 5.22 86.38 0.45 0.90 16 10 C -0.09 0.21 0.63 -51.66 -0.03 0.18 16 11 C 0.10 -0.48 6.20 71.98 0.45 -0.03 16 12 O -0.59 0.48 13.18 -148.98 -1.96 -1.49 16 13 C -0.12 0.49 6.73 31.12 0.21 0.70 16 14 C 0.06 -0.15 3.96 31.12 0.12 -0.03 16 15 H 0.11 -0.68 7.34 -2.39 -0.02 -0.70 16 16 O -0.38 -1.08 10.34 -148.98 -1.54 -2.62 16 17 C 0.10 0.01 5.90 71.23 0.42 0.43 16 18 C -0.11 -0.35 5.51 -19.87 -0.11 -0.46 16 19 C -0.11 -0.26 9.70 22.27 0.22 -0.05 16 20 C -0.13 -0.23 10.05 22.27 0.22 0.00 16 21 C -0.12 -0.23 10.05 22.27 0.22 0.00 16 22 C -0.13 -0.34 10.05 22.27 0.22 -0.11 16 23 C -0.11 -0.40 9.70 22.27 0.22 -0.18 16 24 C -0.14 0.01 7.00 31.12 0.22 0.23 16 25 S 0.12 0.35 20.57 -56.49 -1.16 -0.81 16 26 H 0.40 -2.20 8.74 -74.06 -0.65 -2.84 16 27 H 0.11 -0.37 7.96 -2.38 -0.02 -0.39 16 28 H -0.28 -1.86 7.11 99.48 0.71 -1.15 16 29 H -0.25 -0.35 7.11 99.48 0.71 0.35 16 30 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 31 H 0.42 -1.89 8.00 -92.71 -0.74 -2.63 16 32 H 0.05 0.30 8.05 -2.39 -0.02 0.28 16 33 H 0.05 0.45 7.88 -2.39 -0.02 0.44 16 34 H 0.06 -0.41 7.60 -2.39 -0.02 -0.42 16 35 H 0.07 -0.58 7.31 -2.39 -0.02 -0.60 16 36 H 0.40 -3.39 9.12 -74.06 -0.68 -4.06 16 37 H 0.10 -0.86 8.10 -2.38 -0.02 -0.88 16 38 H 0.09 -0.10 8.10 -2.39 -0.02 -0.12 16 39 H 0.06 -0.10 8.08 -2.39 -0.02 -0.12 16 40 H 0.07 -0.24 8.08 -2.39 -0.02 -0.26 16 41 H 0.13 -0.15 8.06 -2.91 -0.02 -0.17 16 42 H 0.14 -0.33 8.06 -2.91 -0.02 -0.36 16 43 H 0.14 -0.30 8.06 -2.91 -0.02 -0.32 16 44 H 0.14 -0.15 8.06 -2.91 -0.02 -0.18 16 45 H 0.13 0.14 8.06 -2.91 -0.02 0.12 16 46 H 0.08 0.24 8.03 -2.39 -0.02 0.22 16 47 H 0.08 0.05 8.03 -2.39 -0.02 0.04 16 Total: 0.00 -21.27 405.25 -3.83 -25.11 By element: Atomic # 1 Polarization: -11.66 SS G_CDS: -1.02 Total: -12.68 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 5.57 Total: 5.59 kcal Atomic # 7 Polarization: -7.06 SS G_CDS: -3.94 Total: -11.00 kcal Atomic # 8 Polarization: -2.45 SS G_CDS: -5.42 Total: -7.87 kcal Atomic # 14 Polarization: -0.46 SS G_CDS: 2.13 Total: 1.67 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -1.16 Total: -0.81 kcal Total: -21.27 -3.83 -25.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15111638_15704118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.316 kcal (2) G-P(sol) polarization free energy of solvation -21.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds