Wall clock time and date at job start Mon Mar 8 2021 08:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33322 * 125.95620 * 2 1 4 4 C 1.50706 * 122.70797 * 0.02562 * 3 2 1 5 5 O 1.42906 * 109.46988 * 329.99731 * 4 3 2 6 6 Si 1.86299 * 109.47140 * 210.00160 * 4 3 2 7 7 N 1.32113 * 114.58292 * 180.02562 * 3 2 1 8 8 C 1.29683 * 116.86704 * 359.97438 * 7 3 2 9 9 N 1.38612 * 124.95209 * 180.02562 * 8 7 3 10 10 C 1.46500 * 120.00017 * 180.02562 * 9 8 7 11 11 C 1.53007 * 109.47011 * 174.96929 * 10 9 8 12 12 C 1.52996 * 112.84687 * 294.71508 * 11 10 9 13 13 O 1.42899 * 109.47071 * 297.70811 * 12 11 10 14 14 C 1.53776 * 113.61578 * 65.91251 * 11 10 9 15 15 C 1.53777 * 87.08154 * 139.98175 * 14 11 10 16 16 H 1.09002 * 113.61755 * 89.11749 * 15 14 11 17 17 O 1.42902 * 113.61314 * 220.01604 * 15 14 11 18 18 C 1.42895 * 114.00329 * 209.99815 * 17 15 14 19 19 C 1.50698 * 109.47510 * 180.02562 * 18 17 15 20 20 C 1.38233 * 120.00047 * 269.72942 * 19 18 17 21 21 C 1.38242 * 119.99698 * 179.78830 * 20 19 18 22 22 C 1.38225 * 119.99999 * 0.43657 * 21 20 19 23 23 C 1.38235 * 120.00478 * 359.81925 * 22 21 20 24 24 C 1.38235 * 119.99628 * 359.97228 * 23 22 21 25 25 C 1.53787 * 113.61323 * 163.51935 * 11 10 9 26 26 S 1.70968 * 110.10103 * 359.72750 * 8 7 3 27 27 H 1.09001 * 109.47592 * 89.99751 * 1 2 3 28 28 H 1.09008 * 109.46837 * 329.99642 * 1 2 3 29 29 H 1.09004 * 109.46986 * 210.00213 * 1 2 3 30 30 H 1.08993 * 109.47261 * 89.99929 * 4 3 2 31 31 H 0.96701 * 114.00058 * 299.99900 * 5 4 3 32 32 H 1.48504 * 110.00421 * 58.67630 * 6 4 3 33 33 H 1.48498 * 109.99990 * 180.02562 * 6 4 3 34 34 H 0.97002 * 119.99903 * 0.02562 * 9 8 7 35 35 H 1.09005 * 109.47262 * 294.96197 * 10 9 8 36 36 H 1.08998 * 109.47524 * 54.96520 * 10 9 8 37 37 H 1.08994 * 109.47354 * 57.71386 * 12 11 10 38 38 H 1.09005 * 109.47116 * 177.71604 * 12 11 10 39 39 H 0.96706 * 113.99942 * 180.02562 * 13 12 11 40 40 H 1.09004 * 113.61229 * 254.52899 * 14 11 10 41 41 H 1.09004 * 113.61522 * 25.42935 * 14 11 10 42 42 H 1.09001 * 109.47164 * 300.00251 * 18 17 15 43 43 H 1.09004 * 109.46941 * 60.00426 * 18 17 15 44 44 H 1.07997 * 120.00487 * 359.97438 * 20 19 18 45 45 H 1.07999 * 119.99796 * 180.27852 * 21 20 19 46 46 H 1.08008 * 120.00060 * 179.83608 * 22 21 20 47 47 H 1.07997 * 120.00242 * 179.97438 * 23 22 21 48 48 H 1.07998 * 120.00223 * 180.02562 * 24 23 22 49 49 H 1.08998 * 113.61180 * 334.56669 * 25 11 10 50 50 H 1.08999 * 113.61419 * 105.46912 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0792 0.0000 4 6 1.7415 2.4830 0.0006 5 8 0.4811 2.5023 -0.6727 6 14 2.9321 3.6151 -0.8778 7 7 3.5850 0.8187 -0.0005 8 6 3.9314 -0.4310 -0.0005 9 7 5.2384 -0.8928 -0.0005 10 6 5.5064 -2.3331 -0.0010 11 6 7.0125 -2.5715 -0.1274 12 6 7.5777 -2.1019 -1.4693 13 8 6.9724 -2.8468 -2.5280 14 6 7.8181 -2.0794 1.0865 15 6 8.6671 -3.3531 0.9403 16 1 9.5231 -3.2335 0.2761 17 8 9.0119 -3.9577 2.1884 18 6 10.2581 -4.6567 2.1711 19 6 10.5194 -5.2515 3.5309 20 6 11.2106 -4.5246 4.4820 21 6 11.4465 -5.0686 5.7308 22 6 10.9990 -6.3428 6.0253 23 6 10.3123 -7.0718 5.0724 24 6 10.0727 -6.5262 3.8251 25 6 7.4453 -3.9958 0.2590 26 16 2.5412 -1.4262 0.0080 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 0.8900 0.5139 29 1 -0.3633 -0.8900 0.5139 30 1 1.6097 2.8211 1.0283 31 1 0.5231 2.2127 -1.5944 32 1 3.1450 3.1463 -2.2708 33 1 2.4032 5.0026 -0.8836 34 1 5.9755 -0.2623 -0.0001 35 1 5.1464 -2.7700 0.9305 36 1 4.9930 -2.7979 -0.8426 37 1 7.3639 -1.0415 -1.6026 38 1 8.6562 -2.2598 -1.4846 39 1 7.2845 -2.6016 -3.4098 40 1 8.3735 -1.1605 0.8985 41 1 7.2393 -2.0440 2.0095 42 1 10.2176 -5.4533 1.4282 43 1 11.0600 -3.9635 1.9172 44 1 11.5638 -3.5306 4.2506 45 1 11.9826 -4.4990 6.4754 46 1 11.1856 -6.7689 7.0001 47 1 9.9631 -8.0675 5.3024 48 1 9.5359 -7.0955 3.0807 49 1 6.7643 -4.4852 0.9552 50 1 7.7000 -4.6217 -0.5962 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_15111638_15704122.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:28:20 Heat of formation + Delta-G solvation = -20.397712 kcal Electronic energy + Delta-G solvation = -31272.740802 eV Core-core repulsion = 26973.416725 eV Total energy + Delta-G solvation = -4299.324077 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.149 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.55464 -40.88310 -40.20093 -38.38848 -37.86520 -36.93452 -36.06228 -32.95136 -32.58542 -31.82841 -29.99104 -28.74926 -27.38355 -27.00427 -26.73023 -25.47273 -24.09311 -23.51739 -23.12536 -22.29847 -20.78423 -19.60363 -19.04847 -18.53827 -18.18202 -17.91814 -17.79184 -17.23542 -16.73946 -16.70827 -16.55818 -16.25540 -16.02675 -15.81357 -15.56467 -15.51233 -15.13739 -15.01131 -14.41641 -14.32743 -14.12060 -14.10121 -13.93441 -13.75747 -13.67580 -13.50652 -13.41166 -13.27337 -12.99505 -12.81607 -12.69745 -12.36002 -12.20445 -11.99829 -11.81556 -11.81110 -11.74945 -11.59555 -11.08232 -11.01710 -10.53266 -10.50636 -10.39181 -9.91304 -9.84217 -9.78145 -8.54867 -4.63961 0.11161 0.26397 0.31809 0.48089 0.87792 1.43487 1.85952 1.90421 2.01642 2.16595 2.50798 2.82238 3.03384 3.24521 3.34865 3.37509 3.51371 3.61599 3.66722 3.78677 3.85884 3.91713 3.94680 4.07863 4.20370 4.23713 4.25855 4.27892 4.30795 4.33176 4.41751 4.45480 4.48801 4.58875 4.62823 4.65108 4.69353 4.70950 4.81389 4.86041 4.96919 4.99379 5.02133 5.04044 5.10236 5.17082 5.35711 5.51864 5.59607 5.61063 5.62789 6.04537 6.16841 6.29311 6.42910 6.47610 7.02366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.244 4.244 3 C 0.069 3.931 4 C -0.042 4.042 5 O -0.526 6.526 6 Si 0.721 3.279 7 N -0.541 5.541 8 C 0.322 3.678 9 N -0.690 5.690 10 C 0.143 3.857 11 C -0.091 4.091 12 C 0.098 3.902 13 O -0.567 6.567 14 C -0.123 4.123 15 C 0.063 3.937 16 H 0.089 0.911 17 O -0.364 6.364 18 C 0.102 3.898 19 C -0.094 4.094 20 C -0.099 4.099 21 C -0.123 4.123 22 C -0.113 4.113 23 C -0.123 4.123 24 C -0.099 4.099 25 C -0.133 4.133 26 S 0.101 5.899 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.124 0.876 31 H 0.375 0.625 32 H -0.268 1.268 33 H -0.261 1.261 34 H 0.411 0.589 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.384 0.616 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.124 0.876 48 H 0.123 0.877 49 H 0.096 0.904 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.750 -2.362 -0.727 5.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.367 4.367 3 C -0.061 4.061 4 C -0.154 4.154 5 O -0.331 6.331 6 Si 0.622 3.378 7 N -0.269 5.269 8 C -0.049 4.049 9 N -0.331 5.331 10 C 0.019 3.981 11 C -0.092 4.092 12 C 0.020 3.980 13 O -0.373 6.373 14 C -0.161 4.161 15 C 0.005 3.995 16 H 0.107 0.893 17 O -0.283 6.283 18 C 0.026 3.974 19 C -0.094 4.094 20 C -0.117 4.117 21 C -0.141 4.141 22 C -0.131 4.131 23 C -0.141 4.141 24 C -0.117 4.117 25 C -0.172 4.172 26 S 0.350 5.650 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.078 0.922 30 H 0.142 0.858 31 H 0.223 0.777 32 H -0.193 1.193 33 H -0.187 1.187 34 H 0.249 0.751 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.232 0.768 40 H 0.097 0.903 41 H 0.121 0.879 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.142 0.858 48 H 0.141 0.859 49 H 0.115 0.885 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.533 -2.778 -0.150 5.319 hybrid contribution -0.197 0.609 -1.295 1.444 sum 4.336 -2.170 -1.445 5.059 Atomic orbital electron populations 1.20196 0.86561 1.03171 1.02509 1.25095 1.01277 0.92820 1.17545 1.20064 0.86883 0.97038 1.02134 1.24456 0.91907 0.95459 1.03626 1.86604 1.28554 1.89120 1.28870 0.93653 0.86269 0.76334 0.81572 1.65717 1.16972 1.16406 1.27768 1.23232 0.91767 0.91420 0.98474 1.43855 1.01674 1.07180 1.80381 1.21413 0.95058 0.79189 1.02408 1.21753 0.93897 0.99239 0.94293 1.21877 0.95683 0.94585 0.85868 1.86448 1.68887 1.64235 1.17706 1.23314 0.97647 0.97425 0.97673 1.23711 0.95923 0.93761 0.86113 0.89301 1.88053 1.38014 1.70000 1.32194 1.21377 0.86425 0.95395 0.94206 1.19575 0.99736 0.94725 0.95374 1.21075 0.98092 0.99376 0.93167 1.21193 1.00295 0.95845 0.96781 1.21259 0.97662 0.94727 0.99465 1.21195 0.99141 1.00197 0.93576 1.21078 0.98566 0.94994 0.97039 1.23497 0.97935 0.94971 1.00748 1.84049 0.96543 1.10481 1.73900 0.91395 0.89048 0.92187 0.85847 0.77673 1.19315 1.18696 0.75103 0.91159 0.90253 0.92987 0.92983 0.76830 0.90285 0.87921 0.92278 0.92322 0.85954 0.85773 0.85851 0.85773 0.85933 0.88523 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.06 8.95 36.01 0.32 0.26 16 2 C -0.24 -0.60 6.50 -36.03 -0.23 -0.83 16 3 C 0.07 0.20 5.92 -84.19 -0.50 -0.30 16 4 C -0.04 -0.07 2.83 36.01 0.10 0.03 16 5 O -0.53 -0.81 9.89 -35.23 -0.35 -1.16 16 6 Si 0.72 1.13 32.08 -169.99 -5.45 -4.32 16 7 N -0.54 -1.69 8.95 -11.36 -0.10 -1.79 16 8 C 0.32 0.67 8.24 -87.68 -0.72 -0.05 16 9 N -0.69 0.21 5.39 -62.29 -0.34 -0.13 16 10 C 0.14 -0.16 4.79 -4.04 -0.02 -0.18 16 11 C -0.09 0.21 0.63 -153.69 -0.10 0.11 16 12 C 0.10 -0.27 6.17 37.16 0.23 -0.05 16 13 O -0.57 0.87 13.20 -35.23 -0.47 0.41 16 14 C -0.12 0.29 6.79 -25.92 -0.18 0.11 16 15 C 0.06 -0.11 3.96 -25.83 -0.10 -0.21 16 16 H 0.09 -0.26 7.33 -51.93 -0.38 -0.64 16 17 O -0.36 -0.27 10.34 -35.23 -0.36 -0.63 16 18 C 0.10 -0.04 5.90 36.00 0.21 0.17 16 19 C -0.09 -0.10 5.51 -104.62 -0.58 -0.68 16 20 C -0.10 -0.09 9.70 -39.58 -0.38 -0.47 16 21 C -0.12 -0.08 10.05 -39.58 -0.40 -0.48 16 22 C -0.11 -0.07 10.05 -39.59 -0.40 -0.46 16 23 C -0.12 -0.08 10.05 -39.58 -0.40 -0.48 16 24 C -0.10 -0.09 9.70 -39.58 -0.38 -0.47 16 25 C -0.13 0.22 7.03 -25.83 -0.18 0.04 16 26 S 0.10 0.18 22.28 -107.50 -2.40 -2.22 16 27 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.09 0.12 6.61 -51.92 -0.34 -0.22 16 29 H 0.06 0.03 8.14 -51.93 -0.42 -0.40 16 30 H 0.12 0.11 7.96 -51.93 -0.41 -0.30 16 31 H 0.38 -0.28 8.68 45.56 0.40 0.12 16 32 H -0.27 -1.16 7.11 56.52 0.40 -0.76 16 33 H -0.26 -0.99 7.11 56.52 0.40 -0.59 16 34 H 0.41 -0.53 7.97 -40.82 -0.33 -0.85 16 35 H 0.07 -0.07 8.07 -51.93 -0.42 -0.49 16 36 H 0.08 0.00 7.79 -51.93 -0.40 -0.40 16 37 H 0.05 -0.16 7.55 -51.93 -0.39 -0.56 16 38 H 0.05 -0.20 7.31 -51.93 -0.38 -0.58 16 39 H 0.38 -1.93 9.12 45.56 0.42 -1.52 16 40 H 0.08 -0.27 8.10 -51.93 -0.42 -0.69 16 41 H 0.10 -0.13 8.10 -51.93 -0.42 -0.55 16 42 H 0.06 -0.08 8.08 -51.93 -0.42 -0.50 16 43 H 0.06 -0.09 8.08 -51.93 -0.42 -0.51 16 44 H 0.12 -0.07 8.06 -52.49 -0.42 -0.50 16 45 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 46 H 0.12 -0.15 8.06 -52.48 -0.42 -0.57 16 47 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 48 H 0.12 -0.06 8.06 -52.49 -0.42 -0.48 16 49 H 0.10 -0.10 8.05 -51.93 -0.42 -0.52 16 50 H 0.08 -0.11 8.10 -51.93 -0.42 -0.53 16 LS Contribution 422.59 15.07 6.37 6.37 Total: 0.00 -7.26 422.59 -13.72 -20.98 By element: Atomic # 1 Polarization: -6.66 SS G_CDS: -6.92 Total: -13.58 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -3.70 Total: -3.92 kcal Atomic # 7 Polarization: -1.48 SS G_CDS: -0.44 Total: -1.92 kcal Atomic # 8 Polarization: -0.20 SS G_CDS: -1.18 Total: -1.38 kcal Atomic # 14 Polarization: 1.13 SS G_CDS: -5.45 Total: -4.32 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -2.40 Total: -2.22 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -7.26 -13.72 -20.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15111638_15704122.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.583 kcal (2) G-P(sol) polarization free energy of solvation -7.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds