Wall clock time and date at job start Mon Mar 8 2021 08:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33322 * 125.95620 * 2 1 4 4 C 1.50706 * 122.70797 * 0.02562 * 3 2 1 5 5 O 1.42906 * 109.46988 * 329.99731 * 4 3 2 6 6 Si 1.86299 * 109.47140 * 210.00160 * 4 3 2 7 7 N 1.32113 * 114.58292 * 180.02562 * 3 2 1 8 8 C 1.29683 * 116.86704 * 359.97438 * 7 3 2 9 9 N 1.38612 * 124.95209 * 180.02562 * 8 7 3 10 10 C 1.46500 * 120.00017 * 180.02562 * 9 8 7 11 11 C 1.53007 * 109.47011 * 174.96929 * 10 9 8 12 12 C 1.52996 * 112.84687 * 294.71508 * 11 10 9 13 13 O 1.42899 * 109.47071 * 297.70811 * 12 11 10 14 14 C 1.53776 * 113.61578 * 65.91251 * 11 10 9 15 15 C 1.53777 * 87.08154 * 139.98175 * 14 11 10 16 16 H 1.09002 * 113.61755 * 89.11749 * 15 14 11 17 17 O 1.42902 * 113.61314 * 220.01604 * 15 14 11 18 18 C 1.42895 * 114.00329 * 209.99815 * 17 15 14 19 19 C 1.50698 * 109.47510 * 180.02562 * 18 17 15 20 20 C 1.38233 * 120.00047 * 269.72942 * 19 18 17 21 21 C 1.38242 * 119.99698 * 179.78830 * 20 19 18 22 22 C 1.38225 * 119.99999 * 0.43657 * 21 20 19 23 23 C 1.38235 * 120.00478 * 359.81925 * 22 21 20 24 24 C 1.38235 * 119.99628 * 359.97228 * 23 22 21 25 25 C 1.53787 * 113.61323 * 163.51935 * 11 10 9 26 26 S 1.70968 * 110.10103 * 359.72750 * 8 7 3 27 27 H 1.09001 * 109.47592 * 89.99751 * 1 2 3 28 28 H 1.09008 * 109.46837 * 329.99642 * 1 2 3 29 29 H 1.09004 * 109.46986 * 210.00213 * 1 2 3 30 30 H 1.08993 * 109.47261 * 89.99929 * 4 3 2 31 31 H 0.96701 * 114.00058 * 299.99900 * 5 4 3 32 32 H 1.48504 * 110.00421 * 58.67630 * 6 4 3 33 33 H 1.48498 * 109.99990 * 180.02562 * 6 4 3 34 34 H 0.97002 * 119.99903 * 0.02562 * 9 8 7 35 35 H 1.09005 * 109.47262 * 294.96197 * 10 9 8 36 36 H 1.08998 * 109.47524 * 54.96520 * 10 9 8 37 37 H 1.08994 * 109.47354 * 57.71386 * 12 11 10 38 38 H 1.09005 * 109.47116 * 177.71604 * 12 11 10 39 39 H 0.96706 * 113.99942 * 180.02562 * 13 12 11 40 40 H 1.09004 * 113.61229 * 254.52899 * 14 11 10 41 41 H 1.09004 * 113.61522 * 25.42935 * 14 11 10 42 42 H 1.09001 * 109.47164 * 300.00251 * 18 17 15 43 43 H 1.09004 * 109.46941 * 60.00426 * 18 17 15 44 44 H 1.07997 * 120.00487 * 359.97438 * 20 19 18 45 45 H 1.07999 * 119.99796 * 180.27852 * 21 20 19 46 46 H 1.08008 * 120.00060 * 179.83608 * 22 21 20 47 47 H 1.07997 * 120.00242 * 179.97438 * 23 22 21 48 48 H 1.07998 * 120.00223 * 180.02562 * 24 23 22 49 49 H 1.08998 * 113.61180 * 334.56669 * 25 11 10 50 50 H 1.08999 * 113.61419 * 105.46912 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0792 0.0000 4 6 1.7415 2.4830 0.0006 5 8 0.4811 2.5023 -0.6727 6 14 2.9321 3.6151 -0.8778 7 7 3.5850 0.8187 -0.0005 8 6 3.9314 -0.4310 -0.0005 9 7 5.2384 -0.8928 -0.0005 10 6 5.5064 -2.3331 -0.0010 11 6 7.0125 -2.5715 -0.1274 12 6 7.5777 -2.1019 -1.4693 13 8 6.9724 -2.8468 -2.5280 14 6 7.8181 -2.0794 1.0865 15 6 8.6671 -3.3531 0.9403 16 1 9.5231 -3.2335 0.2761 17 8 9.0119 -3.9577 2.1884 18 6 10.2581 -4.6567 2.1711 19 6 10.5194 -5.2515 3.5309 20 6 11.2106 -4.5246 4.4820 21 6 11.4465 -5.0686 5.7308 22 6 10.9990 -6.3428 6.0253 23 6 10.3123 -7.0718 5.0724 24 6 10.0727 -6.5262 3.8251 25 6 7.4453 -3.9958 0.2590 26 16 2.5412 -1.4262 0.0080 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 0.8900 0.5139 29 1 -0.3633 -0.8900 0.5139 30 1 1.6097 2.8211 1.0283 31 1 0.5231 2.2127 -1.5944 32 1 3.1450 3.1463 -2.2708 33 1 2.4032 5.0026 -0.8836 34 1 5.9755 -0.2623 -0.0001 35 1 5.1464 -2.7700 0.9305 36 1 4.9930 -2.7979 -0.8426 37 1 7.3639 -1.0415 -1.6026 38 1 8.6562 -2.2598 -1.4846 39 1 7.2845 -2.6016 -3.4098 40 1 8.3735 -1.1605 0.8985 41 1 7.2393 -2.0440 2.0095 42 1 10.2176 -5.4533 1.4282 43 1 11.0600 -3.9635 1.9172 44 1 11.5638 -3.5306 4.2506 45 1 11.9826 -4.4990 6.4754 46 1 11.1856 -6.7689 7.0001 47 1 9.9631 -8.0675 5.3024 48 1 9.5359 -7.0955 3.0807 49 1 6.7643 -4.4852 0.9552 50 1 7.7000 -4.6217 -0.5962 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15111638_15704122.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:28:18 Heat of formation + Delta-G solvation = -17.236087 kcal Electronic energy + Delta-G solvation = -31272.603704 eV Core-core repulsion = 26973.416725 eV Total energy + Delta-G solvation = -4299.186978 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.149 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.44831 -40.98386 -40.17042 -38.36311 -37.89514 -36.81888 -36.05673 -32.97815 -32.61225 -31.81854 -30.00780 -28.72714 -27.25270 -26.95035 -26.60189 -25.57272 -24.18329 -23.51041 -23.02088 -22.27708 -20.86170 -19.50381 -19.10156 -18.39740 -18.11579 -17.98101 -17.77735 -17.24847 -16.78816 -16.66736 -16.50995 -16.21667 -16.01250 -15.71457 -15.66851 -15.49749 -15.09622 -14.99440 -14.39277 -14.30494 -14.29418 -14.01352 -13.86491 -13.82225 -13.76129 -13.38268 -13.37131 -13.36213 -12.89062 -12.79664 -12.73417 -12.46482 -12.17857 -11.96689 -11.95362 -11.72299 -11.66343 -11.45023 -11.10118 -10.84561 -10.67810 -10.51128 -10.41717 -10.04770 -9.85428 -9.78641 -8.63809 -4.79113 -0.02707 0.14720 0.31371 0.46796 0.74314 1.29184 1.66871 1.81751 1.89092 1.99264 2.56876 3.03404 3.08518 3.27863 3.39430 3.51702 3.54555 3.67364 3.81192 3.88985 3.92725 4.07499 4.11604 4.12897 4.15532 4.26277 4.32375 4.33964 4.41179 4.48149 4.50149 4.54733 4.58155 4.61950 4.63563 4.74678 4.77416 4.78108 4.84751 4.87749 5.00872 5.05581 5.08663 5.12424 5.13387 5.18423 5.29002 5.52314 5.56795 5.59330 5.62738 6.06650 6.28334 6.28660 6.42699 6.84708 6.90414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.257 4.257 3 C 0.058 3.942 4 C -0.042 4.042 5 O -0.532 6.532 6 Si 0.783 3.217 7 N -0.557 5.557 8 C 0.314 3.686 9 N -0.680 5.680 10 C 0.146 3.854 11 C -0.083 4.083 12 C 0.097 3.903 13 O -0.587 6.587 14 C -0.118 4.118 15 C 0.062 3.938 16 H 0.106 0.894 17 O -0.384 6.384 18 C 0.102 3.898 19 C -0.107 4.107 20 C -0.112 4.112 21 C -0.134 4.134 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.113 4.113 25 C -0.133 4.133 26 S 0.106 5.894 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.132 0.868 31 H 0.384 0.616 32 H -0.306 1.306 33 H -0.291 1.291 34 H 0.417 0.583 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.398 0.602 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.133 0.867 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.131 0.869 49 H 0.086 0.914 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.390 -2.357 -0.790 5.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.380 4.380 3 C -0.072 4.072 4 C -0.154 4.154 5 O -0.339 6.339 6 Si 0.689 3.311 7 N -0.285 5.285 8 C -0.057 4.057 9 N -0.321 5.321 10 C 0.023 3.977 11 C -0.084 4.084 12 C 0.020 3.980 13 O -0.396 6.396 14 C -0.156 4.156 15 C 0.005 3.995 16 H 0.124 0.876 17 O -0.304 6.304 18 C 0.026 3.974 19 C -0.107 4.107 20 C -0.130 4.130 21 C -0.152 4.152 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.131 4.131 25 C -0.172 4.172 26 S 0.355 5.645 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.150 0.850 31 H 0.234 0.766 32 H -0.233 1.233 33 H -0.219 1.219 34 H 0.256 0.744 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.248 0.752 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.151 0.849 45 H 0.156 0.844 46 H 0.156 0.844 47 H 0.155 0.845 48 H 0.149 0.851 49 H 0.105 0.895 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.193 -2.785 -0.212 5.897 hybrid contribution -0.397 0.568 -1.317 1.488 sum 4.797 -2.217 -1.529 5.501 Atomic orbital electron populations 1.20196 0.85676 1.03155 1.03046 1.25335 1.02053 0.92986 1.17624 1.20248 0.87015 0.97565 1.02402 1.24510 0.91827 0.94959 1.04153 1.86582 1.28516 1.89131 1.29691 0.92885 0.85349 0.73769 0.79091 1.65732 1.17196 1.16882 1.28687 1.23459 0.92604 0.91391 0.98260 1.43903 1.01089 1.07609 1.79459 1.21403 0.95951 0.78562 1.01824 1.21697 0.92947 0.98786 0.94940 1.21933 0.96365 0.94617 0.85109 1.86410 1.69510 1.64772 1.18859 1.23254 0.97415 0.97911 0.96976 1.23853 0.96377 0.93681 0.85638 0.87638 1.88024 1.38552 1.70335 1.33477 1.21431 0.86466 0.95849 0.93635 1.19844 0.99752 0.94940 0.96206 1.21316 0.98302 1.00006 0.93391 1.21469 1.00392 0.96149 0.97173 1.21534 0.97656 0.94921 1.00207 1.21459 0.99183 1.00948 0.93633 1.21306 0.98936 0.95359 0.97532 1.23459 0.98024 0.95240 1.00452 1.83985 0.96382 1.10241 1.73930 0.90553 0.89421 0.91771 0.85008 0.76632 1.23291 1.21891 0.74417 0.91352 0.91278 0.92512 0.91499 0.75243 0.88752 0.89147 0.91543 0.91085 0.84885 0.84362 0.84407 0.84464 0.85135 0.89537 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.10 8.95 71.24 0.64 0.53 16 2 C -0.26 -1.30 6.50 24.57 0.16 -1.14 16 3 C 0.06 0.34 5.92 41.41 0.25 0.59 16 4 C -0.04 -0.14 2.83 71.24 0.20 0.06 16 5 O -0.53 -1.65 9.89 -148.98 -1.47 -3.12 16 6 Si 0.78 2.89 32.08 68.60 2.20 5.09 16 7 N -0.56 -3.58 8.95 -189.86 -1.70 -5.28 16 8 C 0.31 1.38 8.24 179.32 1.48 2.86 16 9 N -0.68 0.40 5.39 -350.99 -1.89 -1.49 16 10 C 0.15 -0.30 4.79 86.38 0.41 0.12 16 11 C -0.08 0.41 0.63 -51.65 -0.03 0.38 16 12 C 0.10 -0.64 6.17 71.98 0.44 -0.19 16 13 O -0.59 2.09 13.20 -148.98 -1.97 0.13 16 14 C -0.12 0.62 6.79 31.12 0.21 0.83 16 15 C 0.06 -0.24 3.96 31.18 0.12 -0.12 16 16 H 0.11 -0.78 7.33 -2.39 -0.02 -0.79 16 17 O -0.38 -0.56 10.34 -148.98 -1.54 -2.10 16 18 C 0.10 -0.10 5.90 71.24 0.42 0.32 16 19 C -0.11 -0.26 5.51 -19.87 -0.11 -0.37 16 20 C -0.11 -0.22 9.70 22.27 0.22 -0.01 16 21 C -0.13 -0.19 10.05 22.27 0.22 0.03 16 22 C -0.13 -0.17 10.05 22.27 0.22 0.06 16 23 C -0.13 -0.23 10.05 22.27 0.22 0.00 16 24 C -0.11 -0.27 9.70 22.27 0.22 -0.05 16 25 C -0.13 0.43 7.03 31.18 0.22 0.65 16 26 S 0.11 0.40 22.28 -56.49 -1.26 -0.85 16 27 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.09 0.23 6.61 -2.38 -0.02 0.21 16 29 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.13 0.20 7.96 -2.39 -0.02 0.18 16 31 H 0.38 -0.51 8.68 -74.06 -0.64 -1.15 16 32 H -0.31 -3.02 7.11 99.48 0.71 -2.32 16 33 H -0.29 -2.47 7.11 99.48 0.71 -1.76 16 34 H 0.42 -1.24 7.97 -92.71 -0.74 -1.98 16 35 H 0.07 -0.10 8.07 -2.38 -0.02 -0.12 16 36 H 0.07 0.04 7.79 -2.39 -0.02 0.02 16 37 H 0.06 -0.42 7.55 -2.39 -0.02 -0.44 16 38 H 0.07 -0.62 7.31 -2.38 -0.02 -0.64 16 39 H 0.40 -4.22 9.12 -74.05 -0.68 -4.89 16 40 H 0.09 -0.77 8.10 -2.38 -0.02 -0.79 16 41 H 0.09 -0.21 8.10 -2.38 -0.02 -0.23 16 42 H 0.07 -0.19 8.08 -2.39 -0.02 -0.21 16 43 H 0.07 -0.28 8.08 -2.39 -0.02 -0.30 16 44 H 0.13 -0.16 8.06 -2.91 -0.02 -0.19 16 45 H 0.14 -0.34 8.06 -2.91 -0.02 -0.36 16 46 H 0.14 -0.35 8.06 -2.91 -0.02 -0.37 16 47 H 0.14 -0.28 8.06 -2.91 -0.02 -0.30 16 48 H 0.13 -0.05 8.06 -2.91 -0.02 -0.07 16 49 H 0.09 -0.10 8.05 -2.39 -0.02 -0.12 16 50 H 0.08 -0.21 8.10 -2.39 -0.02 -0.23 16 Total: 0.00 -16.80 422.59 -3.16 -19.96 By element: Atomic # 1 Polarization: -15.82 SS G_CDS: -1.04 Total: -16.86 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 5.51 Total: 4.53 kcal Atomic # 7 Polarization: -3.17 SS G_CDS: -3.59 Total: -6.77 kcal Atomic # 8 Polarization: -0.12 SS G_CDS: -4.98 Total: -5.10 kcal Atomic # 14 Polarization: 2.89 SS G_CDS: 2.20 Total: 5.09 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -1.26 Total: -0.85 kcal Total: -16.80 -3.16 -19.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15111638_15704122.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.724 kcal (2) G-P(sol) polarization free energy of solvation -16.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds