Wall clock time and date at job start Mon Mar 8 2021 08:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86294 * 109.47350 * 2 1 4 4 C 1.50696 * 109.47409 * 120.00114 * 2 1 3 5 5 C 1.37984 * 120.32962 * 245.00273 * 4 2 1 6 6 N 1.32009 * 120.90289 * 179.97438 * 5 4 2 7 7 C 1.32339 * 121.64504 * 359.97438 * 6 5 4 8 8 N 1.39152 * 119.71732 * 179.97438 * 7 6 5 9 9 C 1.46497 * 119.99663 * 0.02562 * 8 7 6 10 10 C 1.52999 * 109.46876 * 174.99474 * 9 8 7 11 11 C 1.53006 * 112.84791 * 293.63684 * 10 9 8 12 12 O 1.42896 * 109.47183 * 295.62380 * 11 10 9 13 13 C 1.53782 * 113.61755 * 64.83088 * 10 9 8 14 14 C 1.53786 * 87.08081 * 139.98183 * 13 10 9 15 15 H 1.08996 * 113.61153 * 89.11906 * 14 13 10 16 16 O 1.42898 * 113.61427 * 219.93460 * 14 13 10 17 17 C 1.42897 * 113.99979 * 209.99922 * 16 14 13 18 18 C 1.50699 * 109.47204 * 180.02562 * 17 16 14 19 19 C 1.38240 * 120.00116 * 269.73083 * 18 17 16 20 20 C 1.38230 * 119.99776 * 179.81298 * 19 18 17 21 21 C 1.38232 * 120.00362 * 0.38605 * 20 19 18 22 22 C 1.38234 * 119.99980 * 359.86919 * 21 20 19 23 23 C 1.38232 * 120.00117 * 90.00164 * 18 17 16 24 24 C 1.53776 * 87.08263 * 334.57104 * 14 13 10 25 25 C 1.39343 * 120.56765 * 0.25378 * 7 6 5 26 26 F 1.35098 * 120.47429 * 179.72238 * 25 7 6 27 27 C 1.38446 * 119.05077 * 359.49896 * 25 7 6 28 28 H 0.96702 * 113.99673 * 300.00559 * 1 2 3 29 29 H 1.09003 * 109.47281 * 240.00036 * 2 1 3 30 30 H 1.48502 * 110.00045 * 178.68171 * 3 2 1 31 31 H 1.48503 * 110.00237 * 300.00132 * 3 2 1 32 32 H 1.08001 * 119.54596 * 359.94650 * 5 4 2 33 33 H 0.97001 * 119.99927 * 179.97438 * 8 7 6 34 34 H 1.08998 * 109.46912 * 294.98612 * 9 8 7 35 35 H 1.08993 * 109.47640 * 54.99141 * 9 8 7 36 36 H 1.09003 * 109.47010 * 55.62547 * 11 10 9 37 37 H 1.09002 * 109.47154 * 175.62254 * 11 10 9 38 38 H 0.96696 * 113.99965 * 180.02562 * 12 11 10 39 39 H 1.08990 * 113.61825 * 254.53286 * 13 10 9 40 40 H 1.09002 * 113.61184 * 25.43844 * 13 10 9 41 41 H 1.09000 * 109.47387 * 300.00663 * 17 16 14 42 42 H 1.08997 * 109.47215 * 60.00292 * 17 16 14 43 43 H 1.07996 * 119.99568 * 359.97438 * 19 18 17 44 44 H 1.08006 * 119.99688 * 180.23542 * 20 19 18 45 45 H 1.07998 * 120.00254 * 179.83388 * 21 20 19 46 46 H 1.07997 * 119.99910 * 179.97438 * 22 21 20 47 47 H 1.08006 * 119.99918 * 359.97438 * 23 18 17 48 48 H 1.09007 * 113.61554 * 270.88408 * 24 14 13 49 49 H 1.08993 * 113.61966 * 139.97702 * 24 14 13 50 50 H 1.08007 * 120.75547 * 180.24275 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6381 -0.0202 2.1937 6 7 3.0830 -0.6310 3.2761 7 6 2.8713 -1.9211 3.4819 8 7 3.3590 -2.5245 4.6370 9 6 4.1027 -1.7320 5.6193 10 6 4.4145 -2.5973 6.8419 11 6 3.1600 -3.0021 7.6188 12 8 2.5391 -1.8355 8.1623 13 6 5.3582 -3.7734 6.5399 14 6 6.0345 -3.4745 7.8883 15 1 5.5844 -4.0024 8.7290 16 8 7.4579 -3.5966 7.8543 17 6 8.0371 -3.9938 9.0988 18 6 9.5335 -4.0898 8.9485 19 6 10.1146 -5.2848 8.5672 20 6 11.4869 -5.3718 8.4256 21 6 12.2788 -4.2661 8.6730 22 6 11.6981 -3.0726 9.0593 23 6 10.3255 -2.9846 9.1973 24 6 5.5343 -2.0291 7.7296 25 6 2.1692 -2.6816 2.5490 26 9 1.9590 -3.9996 2.7583 27 6 1.6861 -2.0663 1.4067 28 1 -0.3933 0.4418 0.7650 29 1 1.7923 -0.5138 -0.8900 30 1 3.5346 1.7702 0.0321 31 1 1.5615 2.4679 -1.2085 32 1 2.8303 1.0342 2.0601 33 1 3.2059 -3.4697 4.7921 34 1 5.0345 -1.3830 5.1741 35 1 3.5024 -0.8749 5.9243 36 1 2.4636 -3.5051 6.9477 37 1 3.4362 -3.6775 8.4285 38 1 1.7360 -2.0173 8.6691 39 1 4.8553 -4.7398 6.5084 40 1 6.0057 -3.6037 5.6796 41 1 7.7957 -3.2560 9.8639 42 1 7.6380 -4.9648 9.3918 43 1 9.4962 -6.1496 8.3775 44 1 11.9406 -6.3044 8.1241 45 1 13.3512 -4.3348 8.5650 46 1 12.3169 -2.2089 9.2530 47 1 9.8718 -2.0520 9.4990 48 1 6.2299 -1.3825 7.1945 49 1 5.1735 -1.5874 8.6584 50 1 1.1350 -2.6286 0.6674 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15111638_17656566.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:28:23 Heat of formation + Delta-G solvation = -67.352801 kcal Electronic energy + Delta-G solvation = -33290.325084 eV Core-core repulsion = 28585.896279 eV Total energy + Delta-G solvation = -4704.428805 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.168 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -49.97389 -41.61097 -41.13380 -40.18080 -38.34240 -37.91572 -36.79952 -36.06258 -33.30143 -32.81475 -31.83706 -31.80353 -29.24903 -27.46027 -27.05818 -26.70801 -26.08710 -24.69583 -23.52769 -23.02947 -22.68912 -22.29466 -19.87163 -19.17537 -18.59987 -18.43832 -18.22097 -17.98537 -17.72753 -17.46131 -17.07766 -16.68249 -16.58605 -16.20937 -16.13812 -15.94776 -15.79016 -15.62970 -15.40234 -15.31209 -15.02859 -14.78541 -14.33685 -14.31258 -14.13566 -13.98313 -13.89207 -13.87501 -13.52754 -13.39722 -13.37872 -12.87737 -12.69699 -12.56085 -12.22233 -12.15102 -11.96934 -11.76606 -11.66394 -11.45153 -11.27958 -10.84287 -10.74140 -10.69131 -10.44067 -10.41609 -9.87271 -9.80449 -8.77782 -4.97675 -0.09831 0.09607 0.29508 0.44998 1.31525 1.66476 1.93571 1.99420 2.53105 2.55162 2.97742 3.03409 3.08786 3.29128 3.42021 3.49624 3.55434 3.66674 3.66904 3.83710 3.85036 3.89013 3.94629 4.01127 4.07405 4.10645 4.16146 4.24776 4.31924 4.40410 4.42656 4.47213 4.50760 4.53158 4.59945 4.67144 4.70319 4.71986 4.72955 4.77312 4.87783 4.97012 4.99709 5.03769 5.10611 5.14879 5.20056 5.35060 5.50506 5.57398 5.61019 5.91532 6.04846 6.15697 6.26312 6.78933 6.86291 6.94992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.057 4.057 3 Si 0.772 3.228 4 C -0.207 4.207 5 C 0.149 3.851 6 N -0.530 5.530 7 C 0.382 3.618 8 N -0.709 5.709 9 C 0.164 3.836 10 C -0.089 4.089 11 C 0.100 3.900 12 O -0.585 6.585 13 C -0.120 4.120 14 C 0.064 3.936 15 H 0.107 0.893 16 O -0.386 6.386 17 C 0.102 3.898 18 C -0.108 4.108 19 C -0.113 4.113 20 C -0.134 4.134 21 C -0.125 4.125 22 C -0.134 4.134 23 C -0.113 4.113 24 C -0.132 4.132 25 C -0.037 4.037 26 F -0.140 7.140 27 C -0.040 4.040 28 H 0.396 0.604 29 H 0.112 0.888 30 H -0.283 1.283 31 H -0.295 1.295 32 H 0.184 0.816 33 H 0.415 0.585 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.397 0.603 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.133 0.867 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.131 0.869 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.425 -0.508 4.615 4.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.168 4.168 3 Si 0.677 3.323 4 C -0.213 4.213 5 C -0.008 4.008 6 N -0.247 5.247 7 C 0.143 3.857 8 N -0.342 5.342 9 C 0.040 3.960 10 C -0.090 4.090 11 C 0.022 3.978 12 O -0.393 6.393 13 C -0.158 4.158 14 C 0.006 3.994 15 H 0.124 0.876 16 O -0.305 6.305 17 C 0.026 3.974 18 C -0.108 4.108 19 C -0.131 4.131 20 C -0.152 4.152 21 C -0.143 4.143 22 C -0.152 4.152 23 C -0.131 4.131 24 C -0.170 4.170 25 C -0.063 4.063 26 F -0.119 7.119 27 C -0.066 4.066 28 H 0.246 0.754 29 H 0.129 0.871 30 H -0.210 1.210 31 H -0.223 1.223 32 H 0.200 0.800 33 H 0.253 0.747 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.247 0.753 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.150 0.850 44 H 0.157 0.843 45 H 0.157 0.843 46 H 0.156 0.844 47 H 0.149 0.851 48 H 0.101 0.899 49 H 0.097 0.903 50 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.310 0.617 4.001 4.060 hybrid contribution -0.901 -2.021 -0.404 2.249 sum -0.590 -1.404 3.597 3.906 Atomic orbital electron populations 1.86477 1.17161 1.82136 1.50531 1.24962 0.85246 1.10511 0.96049 0.93831 0.78019 0.75031 0.85400 1.20989 1.05576 0.94365 1.00350 1.22685 0.90972 1.00136 0.87044 1.67352 1.25617 1.07551 1.24211 1.18576 0.90661 0.89102 0.87356 1.44510 1.59035 1.12215 1.18450 1.21023 0.95299 0.93430 0.86215 1.21795 0.94247 0.97563 0.95360 1.21891 0.92347 0.87183 0.96350 1.86428 1.45921 1.33325 1.73657 1.23245 0.96370 0.98287 0.97865 1.23814 0.80347 0.96428 0.98794 0.87575 1.88024 1.20430 1.89005 1.33064 1.21439 0.89181 1.00290 0.86506 1.19843 0.94902 0.94427 1.01603 1.21310 0.95540 0.97788 0.98427 1.21468 0.93859 0.99675 1.00171 1.21538 1.01087 0.93122 0.98527 1.21465 0.95085 0.98771 0.99854 1.21310 0.94181 0.98308 0.99344 1.23384 0.95967 0.97407 1.00230 1.18100 1.09775 0.79341 0.99125 1.91461 1.93886 1.31484 1.95057 1.21441 0.95330 0.94925 0.94925 0.75410 0.87092 1.20984 1.22265 0.80009 0.74743 0.92655 0.91662 0.92837 0.91612 0.75267 0.89018 0.89594 0.91502 0.91097 0.84957 0.84332 0.84322 0.84384 0.85141 0.89897 0.90266 0.82705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.56 12.84 -148.98 -1.91 -1.36 16 2 C -0.06 0.10 2.82 71.23 0.20 0.30 16 3 Si 0.77 -2.54 29.83 68.60 2.05 -0.49 16 4 C -0.21 -0.05 5.36 -19.77 -0.11 -0.16 16 5 C 0.15 0.13 9.84 84.61 0.83 0.96 16 6 N -0.53 -2.78 9.56 -193.03 -1.85 -4.62 16 7 C 0.38 1.92 7.49 133.08 1.00 2.92 16 8 N -0.71 -1.32 5.37 -344.82 -1.85 -3.17 16 9 C 0.16 0.30 4.96 86.38 0.43 0.72 16 10 C -0.09 0.18 0.63 -51.65 -0.03 0.15 16 11 C 0.10 -0.44 6.20 71.98 0.45 0.01 16 12 O -0.58 1.08 13.18 -148.98 -1.96 -0.88 16 13 C -0.12 0.29 6.73 31.12 0.21 0.50 16 14 C 0.06 -0.10 3.96 31.12 0.12 0.02 16 15 H 0.11 -0.57 7.33 -2.39 -0.02 -0.59 16 16 O -0.39 -1.34 10.34 -148.98 -1.54 -2.88 16 17 C 0.10 0.05 5.90 71.24 0.42 0.47 16 18 C -0.11 -0.39 5.51 -19.87 -0.11 -0.50 16 19 C -0.11 -0.34 9.70 22.27 0.22 -0.12 16 20 C -0.13 -0.30 10.05 22.27 0.22 -0.08 16 21 C -0.12 -0.26 10.05 22.27 0.22 -0.03 16 22 C -0.13 -0.33 10.05 22.27 0.22 -0.11 16 23 C -0.11 -0.39 9.70 22.27 0.22 -0.17 16 24 C -0.13 0.06 7.00 31.12 0.22 0.28 16 25 C -0.04 -0.17 7.35 22.59 0.17 -0.01 16 26 F -0.14 -0.77 16.65 44.97 0.75 -0.02 16 27 C -0.04 -0.10 9.82 22.48 0.22 0.12 16 28 H 0.40 -3.52 8.70 -74.06 -0.64 -4.16 16 29 H 0.11 -0.11 7.96 -2.39 -0.02 -0.13 16 30 H -0.28 -0.47 7.11 99.48 0.71 0.23 16 31 H -0.29 -1.22 7.11 99.48 0.71 -0.51 16 32 H 0.18 -0.83 4.90 -2.91 -0.01 -0.85 16 33 H 0.41 -0.28 7.35 -92.71 -0.68 -0.96 16 34 H 0.06 0.23 8.05 -2.39 -0.02 0.21 16 35 H 0.07 0.35 7.88 -2.39 -0.02 0.33 16 36 H 0.05 -0.28 7.59 -2.39 -0.02 -0.30 16 37 H 0.07 -0.49 7.31 -2.39 -0.02 -0.51 16 38 H 0.40 -3.78 9.12 -74.06 -0.68 -4.46 16 39 H 0.09 -0.51 8.10 -2.39 -0.02 -0.53 16 40 H 0.09 0.08 8.10 -2.39 -0.02 0.06 16 41 H 0.07 -0.10 8.08 -2.39 -0.02 -0.12 16 42 H 0.07 -0.18 8.08 -2.39 -0.02 -0.20 16 43 H 0.13 -0.01 8.06 -2.91 -0.02 -0.04 16 44 H 0.14 -0.24 8.06 -2.91 -0.02 -0.26 16 45 H 0.14 -0.28 8.06 -2.91 -0.02 -0.30 16 46 H 0.14 -0.19 8.06 -2.91 -0.02 -0.21 16 47 H 0.13 0.10 8.06 -2.91 -0.02 0.07 16 48 H 0.08 0.18 8.03 -2.38 -0.02 0.16 16 49 H 0.08 -0.01 8.03 -2.39 -0.02 -0.03 16 50 H 0.16 0.07 8.06 -2.91 -0.02 0.05 16 Total: 0.00 -19.01 418.07 -2.17 -21.18 By element: Atomic # 1 Polarization: -12.06 SS G_CDS: -0.97 Total: -13.03 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 5.12 Total: 5.28 kcal Atomic # 7 Polarization: -4.10 SS G_CDS: -3.70 Total: -7.80 kcal Atomic # 8 Polarization: 0.30 SS G_CDS: -5.42 Total: -5.12 kcal Atomic # 9 Polarization: -0.77 SS G_CDS: 0.75 Total: -0.02 kcal Atomic # 14 Polarization: -2.54 SS G_CDS: 2.05 Total: -0.49 kcal Total: -19.01 -2.17 -21.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15111638_17656566.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.169 kcal (2) G-P(sol) polarization free energy of solvation -19.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds