Wall clock time and date at job start Mon Mar 8 2021 06:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39605 * 120.14723 * 193.99987 * 3 2 1 5 5 C 1.37965 * 119.84790 * 179.97438 * 4 3 2 6 6 C 1.38348 * 120.14917 * 359.74345 * 5 4 3 7 7 C 1.38382 * 120.30434 * 0.51293 * 6 5 4 8 8 C 1.50701 * 119.92644 * 179.76261 * 7 6 5 9 9 H 1.09003 * 112.84710 * 190.91998 * 8 7 6 10 10 C 1.54050 * 113.61645 * 322.23278 * 8 7 6 11 11 C 1.53785 * 86.98465 * 139.97850 * 10 8 7 12 12 H 1.08995 * 113.61297 * 219.98380 * 11 10 8 13 13 N 1.46500 * 113.61595 * 89.15881 * 11 10 8 14 14 C 1.38398 * 120.00091 * 105.86584 * 13 11 10 15 15 N 1.32501 * 119.21725 * 0.25057 * 14 13 11 16 16 C 1.32272 * 120.74110 * 180.26714 * 15 14 13 17 17 C 1.38605 * 119.19705 * 359.48581 * 16 15 14 18 18 C 1.50697 * 120.72340 * 180.23291 * 17 16 15 19 19 O 1.42902 * 109.47002 * 64.99951 * 18 17 16 20 20 Si 1.86296 * 109.47363 * 185.00112 * 18 17 16 21 21 C 1.38607 * 118.56029 * 0.25336 * 17 16 15 22 22 N 1.32280 * 119.19188 * 0.02562 * 21 17 16 23 23 C 1.53779 * 113.61032 * 59.72506 * 8 7 6 24 24 C 1.37936 * 120.14886 * 359.48987 * 7 6 5 25 25 H 1.08001 * 120.08215 * 359.95275 * 4 3 2 26 26 H 1.07999 * 119.93242 * 179.97438 * 5 4 3 27 27 H 1.07997 * 119.84735 * 180.27666 * 6 5 4 28 28 H 1.08998 * 113.61508 * 25.47161 * 10 8 7 29 29 H 1.09000 * 113.69218 * 254.48757 * 10 8 7 30 30 H 0.97005 * 119.99715 * 285.85866 * 13 11 10 31 31 H 1.08002 * 120.40454 * 179.76837 * 16 15 14 32 32 H 1.09002 * 109.47287 * 305.00395 * 18 17 16 33 33 H 0.96695 * 113.99973 * 60.00814 * 19 18 17 34 34 H 1.48499 * 110.00181 * 58.68202 * 20 18 17 35 35 H 1.48500 * 110.00176 * 180.02562 * 20 18 17 36 36 H 1.08001 * 120.40449 * 180.02562 * 21 17 16 37 37 H 1.09003 * 113.61205 * 105.46963 * 23 8 7 38 38 H 1.08996 * 113.61993 * 334.57263 * 23 8 7 39 39 H 1.07999 * 120.07466 * 180.27564 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 1.1723 0.2921 5 6 4.6483 1.1658 0.2908 6 6 5.3374 0.0004 0.0063 7 6 4.6493 -1.1633 -0.2893 8 6 5.4086 -2.4266 -0.6032 9 1 4.7707 -3.2161 -1.0007 10 6 6.6871 -2.1891 -1.4291 11 6 7.3589 -3.2521 -0.5438 12 1 8.3843 -3.0061 -0.2681 13 7 7.2197 -4.6170 -1.0575 14 6 8.3036 -5.2515 -1.6388 15 7 9.4613 -4.6119 -1.7182 16 6 10.5153 -5.1877 -2.2724 17 6 10.4003 -6.4788 -2.7633 18 6 11.5804 -7.1695 -3.3968 19 8 12.5989 -7.3694 -2.4145 20 14 11.0428 -8.8179 -4.0783 21 6 9.1763 -7.1207 -2.6594 22 7 8.1603 -6.4857 -2.0987 23 6 6.3271 -2.8930 0.5385 24 6 3.2700 -1.1709 -0.2916 25 1 2.7320 2.0819 0.5181 26 1 5.1917 2.0715 0.5162 27 1 6.4174 -0.0002 0.0110 28 1 7.1066 -1.1905 -1.3069 29 1 6.5951 -2.4858 -2.4738 30 1 6.3678 -5.0760 -0.9901 31 1 11.4553 -4.6599 -2.3376 32 1 11.9718 -6.5522 -4.2054 33 1 12.3203 -7.9115 -1.6638 34 1 9.9616 -8.6260 -5.0779 35 1 12.1978 -9.5094 -4.7052 36 1 9.0535 -8.1271 -3.0317 37 1 5.9446 -3.7575 1.0812 38 1 6.6484 -2.0866 1.1977 39 1 2.7341 -2.0808 -0.5181 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_15356834_12175864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:54:24 Heat of formation + Delta-G solvation = 120.575129 kcal Electronic energy + Delta-G solvation = -23262.616493 eV Core-core repulsion = 19752.463968 eV Total energy + Delta-G solvation = -3510.152525 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.122 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.13196 -41.18974 -39.52694 -37.96669 -37.49368 -35.47204 -34.69066 -32.64455 -32.23823 -31.36663 -26.93613 -26.64672 -26.08348 -25.55294 -24.75953 -23.23982 -22.74358 -20.75930 -19.53648 -19.02103 -18.54422 -17.77998 -17.29991 -16.74089 -16.56958 -16.35615 -16.08801 -15.83635 -15.67521 -15.33754 -15.18076 -14.90942 -14.52370 -14.46399 -14.18498 -14.10236 -14.02429 -13.79326 -13.42227 -13.13393 -13.07656 -12.74165 -12.48876 -12.24785 -11.91399 -11.86254 -11.77116 -11.68637 -11.21450 -11.07176 -10.53392 -10.00199 -9.91467 -9.66952 -9.07008 -4.98210 -0.19397 0.07222 0.15914 0.37551 1.33956 1.54760 1.65427 1.82612 1.89989 2.00425 2.80581 2.81915 2.85788 3.19087 3.53334 3.58079 3.62980 3.72877 3.74432 3.78843 3.84298 3.94008 4.02931 4.19575 4.21881 4.26914 4.32831 4.52783 4.57609 4.71848 4.78671 4.82623 4.86326 4.90617 5.02696 5.07564 5.10411 5.17400 5.34975 5.39076 5.44477 5.62344 5.82622 5.90173 6.11412 6.38183 6.41617 6.81082 7.29798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.276 3.724 3 C -0.046 4.046 4 C -0.076 4.076 5 C -0.116 4.116 6 C -0.081 4.081 7 C -0.074 4.074 8 C -0.070 4.070 9 H 0.101 0.899 10 C -0.140 4.140 11 C 0.133 3.867 12 H 0.101 0.899 13 N -0.675 5.675 14 C 0.554 3.446 15 N -0.578 5.578 16 C 0.212 3.788 17 C -0.289 4.289 18 C -0.045 4.045 19 O -0.554 6.554 20 Si 0.764 3.236 21 C 0.195 3.805 22 N -0.586 5.586 23 C -0.125 4.125 24 C -0.071 4.071 25 H 0.140 0.860 26 H 0.157 0.843 27 H 0.153 0.847 28 H 0.109 0.891 29 H 0.058 0.942 30 H 0.418 0.582 31 H 0.183 0.817 32 H 0.114 0.886 33 H 0.395 0.605 34 H -0.286 1.286 35 H -0.297 1.297 36 H 0.187 0.813 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.815 -0.575 2.301 6.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.038 4.038 3 C -0.050 4.050 4 C -0.097 4.097 5 C -0.133 4.133 6 C -0.099 4.099 7 C -0.074 4.074 8 C -0.088 4.088 9 H 0.119 0.881 10 C -0.178 4.178 11 C 0.027 3.973 12 H 0.119 0.881 13 N -0.310 5.310 14 C 0.198 3.802 15 N -0.301 5.301 16 C 0.045 3.955 17 C -0.297 4.297 18 C -0.157 4.157 19 O -0.362 6.362 20 Si 0.671 3.329 21 C 0.028 3.972 22 N -0.308 5.308 23 C -0.163 4.163 24 C -0.092 4.092 25 H 0.158 0.842 26 H 0.175 0.825 27 H 0.171 0.829 28 H 0.128 0.872 29 H 0.077 0.923 30 H 0.257 0.743 31 H 0.200 0.800 32 H 0.132 0.868 33 H 0.245 0.755 34 H -0.213 1.213 35 H -0.224 1.224 36 H 0.203 0.797 37 H 0.098 0.902 38 H 0.132 0.868 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.500 -0.052 1.716 3.899 hybrid contribution 0.450 -0.042 -0.734 0.862 sum 3.950 -0.095 0.982 4.071 Atomic orbital electron populations 1.81315 1.13791 1.09020 1.10873 1.26191 0.93128 0.92313 0.92204 1.16099 0.82848 0.96945 1.09089 1.21419 0.95274 0.96496 0.96475 1.21406 0.93037 0.99717 0.99170 1.21605 1.01772 0.91488 0.95082 1.19691 0.92280 0.95891 0.99541 1.21642 0.94892 0.94544 0.97721 0.88093 1.23651 0.95235 1.00354 0.98597 1.21887 1.00732 0.79748 0.94929 0.88074 1.43913 1.09854 1.15251 1.62019 1.19620 0.87188 0.85661 0.87766 1.68024 0.99905 1.38630 1.23519 1.23183 0.96030 0.90829 0.85478 1.21757 0.98449 0.99004 1.10469 1.24746 0.88045 1.08392 0.94469 1.86481 1.37796 1.75759 1.36122 0.93998 0.77415 0.77433 0.84084 1.23132 0.86747 0.98952 0.88373 1.67917 1.34853 1.09602 1.18429 1.23435 0.94581 1.02502 0.95821 1.21196 0.94277 0.96615 0.97072 0.84178 0.82498 0.82914 0.87233 0.92318 0.74324 0.80003 0.86841 0.75540 1.21317 1.22438 0.79666 0.90167 0.86826 0.84680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -5.69 18.54 19.00 0.35 -5.34 16 2 C 0.28 1.55 15.33 88.33 1.35 2.90 16 3 C -0.05 0.04 5.73 -21.36 -0.12 -0.09 16 4 C -0.08 0.32 9.76 22.54 0.22 0.54 16 5 C -0.12 0.89 10.03 22.23 0.22 1.11 16 6 C -0.08 0.67 8.59 22.33 0.19 0.86 16 7 C -0.07 0.45 5.28 -19.90 -0.11 0.35 16 8 C -0.07 0.53 3.87 -10.92 -0.04 0.49 16 9 H 0.10 -0.77 8.09 -2.39 -0.02 -0.79 16 10 C -0.14 0.88 7.27 31.21 0.23 1.11 16 11 C 0.13 -0.67 4.31 45.52 0.20 -0.47 16 12 H 0.10 -0.29 7.40 -2.39 -0.02 -0.30 16 13 N -0.67 1.09 5.41 -327.93 -1.77 -0.68 16 14 C 0.55 1.74 8.43 261.49 2.20 3.94 16 15 N -0.58 -1.79 9.15 -197.99 -1.81 -3.60 16 16 C 0.21 0.03 10.99 84.71 0.93 0.96 16 17 C -0.29 0.53 5.36 -19.69 -0.11 0.43 16 18 C -0.04 0.17 2.83 71.23 0.20 0.38 16 19 O -0.55 1.79 12.85 -148.98 -1.91 -0.12 16 20 Si 0.76 -3.58 29.88 68.60 2.05 -1.53 16 21 C 0.19 -0.17 9.92 84.71 0.84 0.67 16 22 N -0.59 -1.96 10.46 -197.99 -2.07 -4.03 16 23 C -0.13 1.07 7.29 31.12 0.23 1.30 16 24 C -0.07 0.23 9.41 22.54 0.21 0.45 16 25 H 0.14 -0.88 8.06 -2.91 -0.02 -0.90 16 26 H 0.16 -1.90 8.06 -2.91 -0.02 -1.92 16 27 H 0.15 -1.90 6.66 -2.91 -0.02 -1.92 16 28 H 0.11 -0.97 6.32 -2.39 -0.02 -0.99 16 29 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.42 -1.54 8.82 -92.70 -0.82 -2.36 16 31 H 0.18 -0.64 8.06 -2.91 -0.02 -0.67 16 32 H 0.11 -0.40 7.96 -2.39 -0.02 -0.42 16 33 H 0.39 -4.22 8.70 -74.06 -0.64 -4.86 16 34 H -0.29 -0.15 7.11 99.48 0.71 0.55 16 35 H -0.30 -0.93 7.11 99.48 0.71 -0.22 16 36 H 0.19 -1.19 5.07 -2.91 -0.01 -1.20 16 37 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 38 H 0.11 -1.20 7.71 -2.39 -0.02 -1.22 16 39 H 0.14 -0.63 8.05 -2.91 -0.02 -0.66 16 Total: 0.00 -20.28 340.14 1.18 -19.10 By element: Atomic # 1 Polarization: -18.41 SS G_CDS: -0.30 Total: -18.71 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 6.65 Total: 14.92 kcal Atomic # 7 Polarization: -8.35 SS G_CDS: -5.30 Total: -13.66 kcal Atomic # 8 Polarization: 1.79 SS G_CDS: -1.91 Total: -0.12 kcal Atomic # 14 Polarization: -3.58 SS G_CDS: 2.05 Total: -1.53 kcal Total: -20.28 1.18 -19.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_15356834_12175864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.676 kcal (2) G-P(sol) polarization free energy of solvation -20.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds